Wall clock time and date at job start Tue Mar 31 2020 14:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37780 * 120.04665 * 2 1 4 4 C 1.38958 * 120.09356 * 180.25674 * 3 2 1 5 5 O 1.35813 * 119.90815 * 179.76599 * 4 3 2 6 6 C 1.42897 * 116.99809 * 174.73160 * 5 4 3 7 7 C 1.52999 * 109.47032 * 83.52065 * 6 5 4 8 8 C 1.53000 * 109.47190 * 203.51722 * 6 5 4 9 9 C 1.38956 * 120.17924 * 359.73854 * 4 3 2 10 10 C 1.37767 * 120.09752 * 0.02922 * 9 4 3 11 11 C 1.50692 * 120.04678 * 179.97438 * 10 9 4 12 12 C 1.39717 * 120.04972 * 179.76832 * 2 1 3 13 13 C 1.47791 * 120.09248 * 0.02562 * 12 2 1 14 14 C 1.39116 * 120.32892 * 269.72753 * 13 12 2 15 15 C 1.38334 * 119.95577 * 179.69506 * 14 13 12 16 16 F 1.35107 * 119.69139 * 180.30304 * 15 14 13 17 17 C 1.39235 * 120.62164 * 0.27390 * 15 14 13 18 18 C 1.36336 * 120.66222 * 0.02562 * 17 15 14 19 19 C 1.40796 * 120.01824 * 0.02562 * 18 17 15 20 20 C 1.40796 * 120.30120 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00106 * 152.66914 * 20 19 18 22 22 C 1.40016 * 120.00101 * 332.66061 * 20 19 18 23 23 N 1.30822 * 119.99987 * 347.40963 * 22 20 19 24 24 Si 1.86801 * 120.00161 * 167.41286 * 22 20 19 25 25 H 1.48496 * 109.47359 * 94.97072 * 24 22 20 26 26 H 1.48502 * 109.47301 * 214.97329 * 24 22 20 27 27 H 1.48506 * 109.47041 * 334.97028 * 24 22 20 28 28 H 1.09002 * 109.47057 * 270.23157 * 1 2 3 29 29 H 1.08997 * 109.47545 * 30.23232 * 1 2 3 30 30 H 1.08997 * 109.47220 * 150.23307 * 1 2 3 31 31 H 1.08004 * 119.94870 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47460 * 323.51949 * 6 5 4 33 33 H 1.09002 * 109.47093 * 59.99659 * 7 6 5 34 34 H 1.09002 * 109.47278 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47526 * 300.00179 * 7 6 5 36 36 H 1.09008 * 109.46973 * 60.00006 * 8 6 5 37 37 H 1.08992 * 109.47342 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.47104 * 300.00444 * 8 6 5 39 39 H 1.08005 * 119.95115 * 179.97438 * 9 4 3 40 40 H 1.09001 * 109.47454 * 269.97054 * 11 10 9 41 41 H 1.08999 * 109.47754 * 29.97675 * 11 10 9 42 42 H 1.09003 * 109.46973 * 149.97537 * 11 10 9 43 43 H 1.08006 * 120.02073 * 359.97344 * 14 13 12 44 44 H 1.08003 * 119.67256 * 180.02562 * 17 15 14 45 45 H 1.07997 * 119.99113 * 179.97438 * 18 17 15 46 46 H 0.96994 * 119.99954 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1926 0.0000 4 6 3.5864 1.1938 -0.0054 5 8 4.2626 2.3716 -0.0102 6 6 5.6855 2.3031 0.1013 7 6 6.2936 2.0481 -1.2793 8 6 6.2178 3.6257 0.6566 9 6 4.2859 -0.0069 -0.0053 10 6 3.6039 -1.2038 -0.0005 11 6 4.3636 -2.5052 -0.0010 12 6 2.2066 -1.2094 0.0049 13 6 1.4708 -2.4911 0.0095 14 6 1.1256 -3.0986 1.2125 15 6 0.4313 -4.2951 1.2078 16 9 0.0934 -4.8773 2.3792 17 6 0.0770 -4.9048 0.0072 18 6 0.4078 -4.3347 -1.1862 19 6 1.1152 -3.1177 -1.2135 20 6 1.4594 -2.5235 -2.4426 21 1 1.5850 -1.4528 -2.5084 22 6 1.6391 -3.3206 -3.5796 23 7 1.7323 -4.6199 -3.4595 24 14 1.7458 -2.5287 -5.2681 25 1 3.1713 -2.3162 -5.6260 26 1 1.1104 -3.4183 -6.2732 27 1 1.0405 -1.2220 -5.2475 28 1 -0.3633 0.0042 1.0277 29 1 -0.3634 0.8878 -0.5174 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6567 2.1279 -0.0004 32 1 5.9586 1.4904 0.7744 33 1 6.0205 2.8609 -1.9523 34 1 7.3791 1.9963 -1.1943 35 1 5.9144 1.1060 -1.6750 36 1 5.7846 3.8074 1.6402 37 1 7.3031 3.5733 0.7421 38 1 5.9448 4.4385 -0.0164 39 1 5.3660 -0.0017 -0.0099 40 1 4.5425 -2.8212 -1.0288 41 1 5.3176 -2.3693 0.5085 42 1 3.7804 -3.2666 0.5169 43 1 1.3955 -2.6341 2.1494 44 1 -0.4653 -5.8387 0.0215 45 1 0.1279 -4.8172 -2.1110 46 1 1.8564 -5.1721 -4.2472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236083714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:08 Heat of formation + Delta-G solvation = -65.770964 kcal Electronic energy + Delta-G solvation = -28281.222032 eV Core-core repulsion = 24435.189734 eV Total energy + Delta-G solvation = -3846.032298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -47.48509 -40.03006 -38.38361 -36.71555 -33.69639 -33.37471 -32.85410 -31.15084 -29.44859 -28.74101 -27.47960 -26.47660 -26.19241 -24.94635 -22.63824 -21.48398 -21.03605 -20.00615 -19.51282 -17.42802 -17.36909 -16.39509 -15.81624 -15.49974 -15.24443 -14.71136 -14.50496 -14.24792 -14.06097 -13.83138 -13.81309 -13.24899 -12.86072 -12.72139 -12.60123 -12.56821 -12.53198 -12.32049 -12.10758 -12.06072 -11.93990 -11.87698 -11.43047 -11.33480 -11.20460 -11.10798 -10.99041 -10.85081 -10.82921 -10.44548 -10.18938 -10.13484 -9.87891 -9.51122 -9.27664 -8.06584 -7.65164 -7.37615 -7.30920 -6.88508 -4.47180 1.91142 2.03156 2.55295 2.73575 3.00706 3.04214 3.08687 3.42462 3.83989 4.27482 4.44799 4.74120 4.86660 5.02844 5.30121 5.30849 5.41281 5.45386 5.49545 5.56624 5.62573 5.68532 5.71356 5.87827 5.94817 6.00060 6.00313 6.07028 6.12074 6.16030 6.20038 6.28157 6.32116 6.38400 6.45174 6.70146 6.82039 6.88262 6.91761 6.93305 7.10235 7.10701 7.31604 7.39455 7.41964 7.61272 7.79718 7.87234 7.92922 8.09951 8.45575 8.71553 8.78649 10.03751 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010257 B = 0.004814 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.158253 B = 5814.583955 C = 7375.932286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.039 4.039 3 C -0.164 4.164 4 C 0.117 3.883 5 O -0.316 6.316 6 C 0.078 3.922 7 C -0.182 4.182 8 C -0.147 4.147 9 C -0.219 4.219 10 C -0.029 4.029 11 C -0.108 4.108 12 C -0.017 4.017 13 C -0.148 4.148 14 C -0.100 4.100 15 C -0.046 4.046 16 F -0.175 7.175 17 C -0.128 4.128 18 C -0.137 4.137 19 C 0.123 3.877 20 C -0.439 4.439 21 H 0.082 0.918 22 C 0.076 3.924 23 N -0.791 5.791 24 Si 0.905 3.095 25 H -0.270 1.270 26 H -0.274 1.274 27 H -0.259 1.259 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.129 0.871 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 9.248 2.714 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.039 4.039 3 C -0.183 4.183 4 C 0.072 3.928 5 O -0.231 6.231 6 C 0.022 3.978 7 C -0.239 4.239 8 C -0.204 4.204 9 C -0.238 4.238 10 C -0.029 4.029 11 C -0.164 4.164 12 C -0.018 4.018 13 C -0.149 4.149 14 C -0.119 4.119 15 C -0.066 4.066 16 F -0.155 7.155 17 C -0.147 4.147 18 C -0.156 4.156 19 C 0.120 3.880 20 C -0.468 4.468 21 H 0.100 0.900 22 C -0.143 4.143 23 N -0.416 5.416 24 Si 0.729 3.271 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.182 1.182 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.147 0.853 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.972 9.208 2.581 11.275 hybrid contribution 0.344 -0.046 -0.698 0.779 sum 6.316 9.162 1.883 11.286 Atomic orbital electron populations 1.20736 0.91080 1.02998 1.01749 1.19816 0.95856 0.91382 0.96841 1.20039 0.90585 0.98032 1.09612 1.18870 0.91479 0.84108 0.98303 1.86031 1.19621 1.28813 1.88628 1.22311 0.79291 0.99081 0.97141 1.22401 1.00896 1.03364 0.97236 1.21831 1.00651 0.96225 1.01667 1.20919 0.99286 0.91764 1.11785 1.19799 0.93148 0.94237 0.95709 1.20714 0.98188 0.94803 1.02726 1.18335 0.91350 0.92122 0.99954 1.18166 1.07751 0.96795 0.92221 1.20467 0.99930 0.94461 0.97087 1.17172 1.12153 0.97008 0.80268 1.91286 1.92064 1.84745 1.47363 1.20484 1.02516 0.99593 0.92100 1.20997 1.00363 0.98072 0.96184 1.17542 0.88333 0.90862 0.91284 1.19509 1.39652 0.95347 0.92246 0.90006 1.25935 0.92395 0.94566 1.01364 1.69772 1.34272 1.05305 1.32209 0.86325 0.79414 0.80449 0.80904 1.19477 1.19943 1.18234 0.91764 0.92409 0.90093 0.86237 0.91095 0.91678 0.91443 0.91371 0.91820 0.90864 0.91672 0.86205 0.90739 0.93161 0.90745 0.88269 0.88363 0.85317 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.62 36.00 0.35 -1.53 16 2 C -0.04 -0.73 5.91 -104.24 -0.62 -1.35 16 3 C -0.16 -2.89 9.62 -39.48 -0.38 -3.27 16 4 C 0.12 2.00 6.59 -39.05 -0.26 1.75 16 5 O -0.32 -4.87 9.80 -19.15 -0.19 -5.06 16 6 C 0.08 0.93 2.85 -26.73 -0.08 0.85 16 7 C -0.18 -2.01 9.13 37.16 0.34 -1.67 16 8 C -0.15 -1.35 9.56 37.16 0.36 -0.99 16 9 C -0.22 -3.75 7.81 -39.49 -0.31 -4.06 16 10 C -0.03 -0.55 5.91 -104.24 -0.62 -1.17 16 11 C -0.11 -1.97 9.62 36.00 0.35 -1.62 16 12 C -0.02 -0.36 4.06 -104.88 -0.43 -0.78 16 13 C -0.15 -3.28 2.48 -104.25 -0.26 -3.54 16 14 C -0.10 -2.21 9.45 -39.22 -0.37 -2.58 16 15 C -0.05 -1.06 7.30 -39.18 -0.29 -1.34 16 16 F -0.18 -3.91 17.26 2.25 0.04 -3.87 16 17 C -0.13 -2.92 9.94 -39.90 -0.40 -3.31 16 18 C -0.14 -3.29 8.61 -39.30 -0.34 -3.63 16 19 C 0.12 2.95 5.31 -106.55 -0.57 2.38 16 20 C -0.44 -10.64 8.48 -37.95 -0.32 -10.96 16 21 H 0.08 2.01 7.29 -52.48 -0.38 1.62 16 22 C 0.08 1.76 5.23 -17.32 -0.09 1.67 16 23 N -0.79 -18.88 10.83 55.55 0.60 -18.28 16 24 Si 0.90 17.94 29.58 -169.99 -5.03 12.91 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 27 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.08 1.56 6.86 -51.93 -0.36 1.20 16 31 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 32 H 0.07 0.83 6.39 -51.93 -0.33 0.50 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.87 6.75 -51.93 -0.35 0.52 16 36 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 1.78 5.35 -52.48 -0.28 1.49 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.07 1.47 6.84 -51.93 -0.36 1.11 16 43 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 44 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 45 H 0.13 3.18 6.16 -52.49 -0.32 2.86 16 46 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -25.84 377.55 -9.39 -35.23 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.58 Total: 8.52 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: -3.92 Total: -35.15 kcal Atomic # 7 Polarization: -18.88 SS G_CDS: 0.60 Total: -18.28 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.19 Total: -5.06 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -25.84 -9.39 -35.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236083714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.544 kcal (2) G-P(sol) polarization free energy of solvation -25.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds