Wall clock time and date at job start Tue Mar 31 2020 14:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37780 * 120.04665 * 2 1 4 4 C 1.38958 * 120.09356 * 180.25674 * 3 2 1 5 5 O 1.35813 * 119.90815 * 179.76599 * 4 3 2 6 6 C 1.42897 * 116.99809 * 174.73160 * 5 4 3 7 7 C 1.52999 * 109.47032 * 83.52065 * 6 5 4 8 8 C 1.53000 * 109.47190 * 203.51722 * 6 5 4 9 9 C 1.38956 * 120.17924 * 359.73854 * 4 3 2 10 10 C 1.37767 * 120.09752 * 0.02922 * 9 4 3 11 11 C 1.50692 * 120.04678 * 179.97438 * 10 9 4 12 12 C 1.39717 * 120.04972 * 179.76832 * 2 1 3 13 13 C 1.47791 * 120.09248 * 0.02562 * 12 2 1 14 14 C 1.39116 * 120.32892 * 269.72753 * 13 12 2 15 15 C 1.38334 * 119.95577 * 179.69506 * 14 13 12 16 16 F 1.35107 * 119.69139 * 180.30304 * 15 14 13 17 17 C 1.39235 * 120.62164 * 0.27390 * 15 14 13 18 18 C 1.36336 * 120.66222 * 0.02562 * 17 15 14 19 19 C 1.40796 * 120.01824 * 0.02562 * 18 17 15 20 20 C 1.40796 * 120.30120 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00106 * 152.66914 * 20 19 18 22 22 C 1.40016 * 120.00101 * 332.66061 * 20 19 18 23 23 N 1.30822 * 119.99987 * 347.40963 * 22 20 19 24 24 Si 1.86801 * 120.00161 * 167.41286 * 22 20 19 25 25 H 1.48496 * 109.47359 * 94.97072 * 24 22 20 26 26 H 1.48502 * 109.47301 * 214.97329 * 24 22 20 27 27 H 1.48506 * 109.47041 * 334.97028 * 24 22 20 28 28 H 1.09002 * 109.47057 * 270.23157 * 1 2 3 29 29 H 1.08997 * 109.47545 * 30.23232 * 1 2 3 30 30 H 1.08997 * 109.47220 * 150.23307 * 1 2 3 31 31 H 1.08004 * 119.94870 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47460 * 323.51949 * 6 5 4 33 33 H 1.09002 * 109.47093 * 59.99659 * 7 6 5 34 34 H 1.09002 * 109.47278 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47526 * 300.00179 * 7 6 5 36 36 H 1.09008 * 109.46973 * 60.00006 * 8 6 5 37 37 H 1.08992 * 109.47342 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.47104 * 300.00444 * 8 6 5 39 39 H 1.08005 * 119.95115 * 179.97438 * 9 4 3 40 40 H 1.09001 * 109.47454 * 269.97054 * 11 10 9 41 41 H 1.08999 * 109.47754 * 29.97675 * 11 10 9 42 42 H 1.09003 * 109.46973 * 149.97537 * 11 10 9 43 43 H 1.08006 * 120.02073 * 359.97344 * 14 13 12 44 44 H 1.08003 * 119.67256 * 180.02562 * 17 15 14 45 45 H 1.07997 * 119.99113 * 179.97438 * 18 17 15 46 46 H 0.96994 * 119.99954 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1926 0.0000 4 6 3.5864 1.1938 -0.0054 5 8 4.2626 2.3716 -0.0102 6 6 5.6855 2.3031 0.1013 7 6 6.2936 2.0481 -1.2793 8 6 6.2178 3.6257 0.6566 9 6 4.2859 -0.0069 -0.0053 10 6 3.6039 -1.2038 -0.0005 11 6 4.3636 -2.5052 -0.0010 12 6 2.2066 -1.2094 0.0049 13 6 1.4708 -2.4911 0.0095 14 6 1.1256 -3.0986 1.2125 15 6 0.4313 -4.2951 1.2078 16 9 0.0934 -4.8773 2.3792 17 6 0.0770 -4.9048 0.0072 18 6 0.4078 -4.3347 -1.1862 19 6 1.1152 -3.1177 -1.2135 20 6 1.4594 -2.5235 -2.4426 21 1 1.5850 -1.4528 -2.5084 22 6 1.6391 -3.3206 -3.5796 23 7 1.7323 -4.6199 -3.4595 24 14 1.7458 -2.5287 -5.2681 25 1 3.1713 -2.3162 -5.6260 26 1 1.1104 -3.4183 -6.2732 27 1 1.0405 -1.2220 -5.2475 28 1 -0.3633 0.0042 1.0277 29 1 -0.3634 0.8878 -0.5174 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6567 2.1279 -0.0004 32 1 5.9586 1.4904 0.7744 33 1 6.0205 2.8609 -1.9523 34 1 7.3791 1.9963 -1.1943 35 1 5.9144 1.1060 -1.6750 36 1 5.7846 3.8074 1.6402 37 1 7.3031 3.5733 0.7421 38 1 5.9448 4.4385 -0.0164 39 1 5.3660 -0.0017 -0.0099 40 1 4.5425 -2.8212 -1.0288 41 1 5.3176 -2.3693 0.5085 42 1 3.7804 -3.2666 0.5169 43 1 1.3955 -2.6341 2.1494 44 1 -0.4653 -5.8387 0.0215 45 1 0.1279 -4.8172 -2.1110 46 1 1.8564 -5.1721 -4.2472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236083714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:07 Heat of formation + Delta-G solvation = -74.049679 kcal Electronic energy + Delta-G solvation = -28281.581024 eV Core-core repulsion = 24435.189734 eV Total energy + Delta-G solvation = -3846.391290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.29608 -41.33657 -39.85886 -38.25994 -35.47320 -34.57147 -34.11780 -32.64981 -31.26069 -30.26557 -28.36116 -27.99902 -27.49420 -26.70067 -23.99284 -22.96635 -22.64878 -21.50803 -20.83825 -19.23608 -18.55870 -18.07836 -17.25107 -17.11276 -16.45768 -16.28523 -16.10345 -16.03159 -15.63845 -15.09479 -15.01060 -14.65864 -14.45199 -14.10151 -13.97669 -13.88998 -13.75432 -13.67269 -13.52470 -13.43188 -13.22417 -13.09280 -12.98866 -12.81161 -12.60549 -12.46542 -12.44587 -12.27491 -12.15834 -11.93943 -11.77563 -11.46462 -11.26216 -11.24240 -11.04868 -9.47122 -9.43357 -9.17073 -8.76399 -8.63666 -6.31364 0.50590 0.59641 0.78190 0.93771 1.38151 1.44239 1.50441 2.18746 2.32494 2.65540 2.85201 3.58396 3.85798 3.90355 3.95568 3.97547 4.06872 4.16519 4.23847 4.29196 4.31175 4.40939 4.60244 4.62150 4.70350 4.74990 4.82565 4.83260 4.84582 4.87841 4.89921 4.95562 5.06983 5.10674 5.15454 5.19645 5.22823 5.29206 5.31469 5.42056 5.48709 5.50300 5.67633 5.79934 5.94474 5.96515 6.01017 6.09221 6.29260 6.59747 6.64664 6.89971 6.97079 8.29649 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010257 B = 0.004814 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.158253 B = 5814.583955 C = 7375.932286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.047 4.047 3 C -0.170 4.170 4 C 0.123 3.877 5 O -0.323 6.323 6 C 0.067 3.933 7 C -0.179 4.179 8 C -0.142 4.142 9 C -0.216 4.216 10 C -0.043 4.043 11 C -0.101 4.101 12 C -0.050 4.050 13 C -0.131 4.131 14 C -0.106 4.106 15 C -0.055 4.055 16 F -0.172 7.172 17 C -0.132 4.132 18 C -0.156 4.156 19 C 0.103 3.897 20 C -0.456 4.456 21 H 0.073 0.927 22 C 0.043 3.957 23 N -0.816 5.816 24 Si 0.965 3.035 25 H -0.266 1.266 26 H -0.264 1.264 27 H -0.261 1.261 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.144 0.856 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.541 11.255 2.725 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.047 4.047 3 C -0.189 4.189 4 C 0.078 3.922 5 O -0.238 6.238 6 C 0.011 3.989 7 C -0.237 4.237 8 C -0.199 4.199 9 C -0.234 4.234 10 C -0.043 4.043 11 C -0.157 4.157 12 C -0.050 4.050 13 C -0.132 4.132 14 C -0.124 4.124 15 C -0.075 4.075 16 F -0.152 7.152 17 C -0.151 4.151 18 C -0.175 4.175 19 C 0.101 3.899 20 C -0.485 4.485 21 H 0.091 0.909 22 C -0.173 4.173 23 N -0.442 5.442 24 Si 0.787 3.213 25 H -0.191 1.191 26 H -0.189 1.189 27 H -0.185 1.185 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.161 0.839 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.135 0.865 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.507 11.213 2.607 13.743 hybrid contribution -0.052 -0.589 -0.622 0.858 sum 7.455 10.624 1.985 13.129 Atomic orbital electron populations 1.20710 0.90333 1.02690 1.02434 1.19976 0.96603 0.91373 0.96788 1.20246 0.91172 0.98202 1.09251 1.18972 0.91633 0.84771 0.96874 1.86045 1.21724 1.27864 1.88182 1.22693 0.77395 1.00911 0.97901 1.22394 1.02521 1.02201 0.96542 1.21854 1.02137 0.94547 1.01359 1.21091 1.00440 0.90985 1.10883 1.19946 0.92869 0.95262 0.96257 1.20636 0.99346 0.93963 1.01792 1.18407 0.92126 0.91836 1.02627 1.18327 1.06246 0.97122 0.91520 1.20653 0.99746 0.94336 0.97710 1.17303 1.12444 0.97375 0.80351 1.91284 1.92068 1.84735 1.47091 1.20613 1.02511 1.00154 0.91813 1.20950 1.01605 0.98774 0.96169 1.17795 0.88695 0.91224 0.92208 1.19542 1.40886 0.94982 0.93119 0.90933 1.26583 0.91716 0.94880 1.04149 1.69810 1.34649 1.06288 1.33421 0.85422 0.79363 0.79477 0.77060 1.19142 1.18863 1.18498 0.90565 0.90213 0.92793 0.84405 0.90727 0.91737 0.88767 0.93345 0.91886 0.88269 0.91579 0.83892 0.92312 0.89981 0.92892 0.87005 0.86852 0.86460 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.58 9.62 71.23 0.69 -2.90 16 2 C -0.05 -1.77 5.91 -19.62 -0.12 -1.88 16 3 C -0.17 -5.75 9.62 22.33 0.21 -5.54 16 4 C 0.12 4.00 6.59 22.61 0.15 4.15 16 5 O -0.32 -9.22 9.80 -91.45 -0.90 -10.11 16 6 C 0.07 1.39 2.85 30.59 0.09 1.48 16 7 C -0.18 -3.48 9.13 71.98 0.66 -2.82 16 8 C -0.14 -2.14 9.56 71.98 0.69 -1.45 16 9 C -0.22 -7.06 7.81 22.33 0.17 -6.89 16 10 C -0.04 -1.64 5.91 -19.62 -0.12 -1.76 16 11 C -0.10 -3.67 9.62 71.23 0.69 -2.99 16 12 C -0.05 -2.05 4.06 -20.03 -0.08 -2.13 16 13 C -0.13 -5.92 2.48 -19.62 -0.05 -5.97 16 14 C -0.11 -4.71 9.45 22.50 0.21 -4.50 16 15 C -0.06 -2.54 7.30 22.53 0.16 -2.37 16 16 F -0.17 -7.66 17.26 44.97 0.78 -6.88 16 17 C -0.13 -6.15 9.94 22.07 0.22 -5.93 16 18 C -0.16 -7.75 8.61 22.45 0.19 -7.56 16 19 C 0.10 5.14 5.31 -21.11 -0.11 5.03 16 20 C -0.46 -22.75 8.48 23.33 0.20 -22.55 16 21 H 0.07 3.66 7.29 -2.91 -0.02 3.64 16 22 C 0.04 2.02 5.23 85.27 0.45 2.47 16 23 N -0.82 -39.77 10.83 21.84 0.24 -39.53 16 24 Si 0.97 36.86 29.58 68.60 2.03 38.89 16 25 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 26 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 27 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.08 2.30 8.09 -2.39 -0.02 2.28 16 30 H 0.05 2.12 6.86 -2.39 -0.02 2.10 16 31 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 32 H 0.07 1.52 6.39 -2.39 -0.02 1.50 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.13 6.75 -2.39 -0.02 1.12 16 36 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.14 3.90 5.35 -2.91 -0.02 3.89 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16 42 H 0.05 2.12 6.84 -2.39 -0.02 2.11 16 43 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 44 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 45 H 0.12 6.04 6.16 -2.91 -0.02 6.02 16 46 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 Total: -1.00 -56.08 377.55 7.43 -48.64 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.99 Total: 33.12 kcal Atomic # 6 Polarization: -68.43 SS G_CDS: 4.30 Total: -64.13 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.24 Total: -39.53 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.90 Total: -10.11 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 0.78 Total: -6.88 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Total: -56.08 7.43 -48.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236083714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.406 kcal (2) G-P(sol) polarization free energy of solvation -56.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds