Wall clock time and date at job start Tue Mar 31 2020 14:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37909 * 120.03531 * 2 1 4 4 C 1.38836 * 120.06494 * 179.97438 * 3 2 1 5 5 O 1.35874 * 119.93251 * 179.97438 * 4 3 2 6 6 C 1.42900 * 116.99720 * 185.24483 * 5 4 3 7 7 C 1.53003 * 109.46932 * 156.35331 * 6 5 4 8 8 C 1.53000 * 109.47429 * 276.35228 * 6 5 4 9 9 C 1.38835 * 120.12983 * 359.97438 * 4 3 2 10 10 C 1.37910 * 120.06066 * 0.02562 * 9 4 3 11 11 C 1.50702 * 120.02488 * 180.02562 * 10 9 4 12 12 C 1.39365 * 119.93626 * 359.97438 * 10 9 4 13 13 C 1.48382 * 120.05882 * 179.97438 * 12 10 9 14 14 C 1.39718 * 119.98455 * 114.75309 * 13 12 10 15 15 C 1.38619 * 120.34573 * 179.71814 * 14 13 12 16 16 F 1.35094 * 119.83484 * 180.27363 * 15 14 13 17 17 C 1.37948 * 120.33054 * 0.55140 * 15 14 13 18 18 C 1.40717 * 119.96731 * 359.72757 * 17 15 14 19 19 C 1.41426 * 120.17238 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99680 * 153.52335 * 19 18 17 21 21 C 1.39922 * 120.00012 * 333.52137 * 19 18 17 22 22 N 1.30829 * 119.99857 * 346.98605 * 21 19 18 23 23 Si 1.86797 * 120.00154 * 166.99037 * 21 19 18 24 24 H 1.48500 * 109.47359 * 89.99468 * 23 21 19 25 25 H 1.48502 * 109.47256 * 209.99939 * 23 21 19 26 26 H 1.48507 * 109.46907 * 329.99999 * 23 21 19 27 27 C 1.38754 * 119.99256 * 295.01917 * 13 12 10 28 28 H 1.09002 * 109.46722 * 90.00277 * 1 2 3 29 29 H 1.08997 * 109.46998 * 210.00384 * 1 2 3 30 30 H 1.09004 * 109.46811 * 330.00745 * 1 2 3 31 31 H 1.08001 * 119.96778 * 359.69657 * 3 2 1 32 32 H 1.09000 * 109.47173 * 36.35306 * 6 5 4 33 33 H 1.09000 * 109.47212 * 59.99999 * 7 6 5 34 34 H 1.09002 * 109.46967 * 180.02562 * 7 6 5 35 35 H 1.08995 * 109.46676 * 299.99926 * 7 6 5 36 36 H 1.09000 * 109.47007 * 300.00180 * 8 6 5 37 37 H 1.09003 * 109.47154 * 59.99780 * 8 6 5 38 38 H 1.08993 * 109.47409 * 180.02562 * 8 6 5 39 39 H 1.07998 * 119.96433 * 180.02562 * 9 4 3 40 40 H 1.09003 * 109.46728 * 269.97189 * 11 10 9 41 41 H 1.08997 * 109.47760 * 29.97758 * 11 10 9 42 42 H 1.09005 * 109.46677 * 149.97545 * 11 10 9 43 43 H 1.07992 * 119.82420 * 359.97438 * 14 13 12 44 44 H 1.07992 * 120.01564 * 179.74059 * 17 15 14 45 45 H 0.97005 * 120.00182 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.15787 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1939 0.0000 4 6 3.5856 1.1946 0.0005 5 8 4.2630 2.3725 0.0000 6 6 5.6856 2.3026 -0.1158 7 6 6.2168 3.6222 -0.6793 8 6 6.2981 2.0541 1.2641 9 6 4.2832 -0.0058 0.0016 10 6 3.5982 -1.2028 0.0016 11 6 4.3561 -2.5053 0.0034 12 6 2.2045 -1.2066 0.0011 13 6 1.4648 -2.4929 0.0005 14 6 0.6770 -2.8458 1.0991 15 6 -0.0218 -4.0429 1.1041 16 9 -0.7848 -4.3714 2.1694 17 6 0.0625 -4.9032 0.0290 18 6 0.8565 -4.5640 -1.0821 19 6 0.9456 -5.4425 -2.1869 20 1 1.1680 -5.0535 -3.1695 21 6 0.7457 -6.8156 -2.0067 22 7 0.7303 -7.3216 -0.8003 23 14 0.5010 -7.9262 -3.4886 24 1 1.8185 -8.4309 -3.9519 25 1 -0.3634 -9.0730 -3.1104 26 1 -0.1467 -7.1574 -4.5817 27 6 1.5600 -3.3473 -1.0886 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.6573 2.1292 -0.0050 32 1 5.9560 1.4864 -0.7857 33 1 5.9464 4.4384 -0.0095 34 1 7.3019 3.5687 -0.7681 35 1 5.7805 3.7992 -1.6623 36 1 6.0277 2.8703 1.9339 37 1 5.9196 1.1140 1.6656 38 1 7.3832 2.0012 1.1758 39 1 5.3631 -0.0021 0.0024 40 1 4.5396 -2.8202 -1.0239 41 1 5.3077 -2.3714 0.5178 42 1 3.7692 -3.2665 0.5174 43 1 0.6090 -2.1806 1.9471 44 1 -0.4808 -5.8365 0.0400 45 1 0.5920 -8.2736 -0.6754 46 1 2.1714 -3.0784 -1.9373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236088902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:28 Heat of formation + Delta-G solvation = -67.392266 kcal Electronic energy + Delta-G solvation = -27503.586062 eV Core-core repulsion = 23657.483459 eV Total energy + Delta-G solvation = -3846.102603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -47.65734 -40.27824 -38.52672 -36.84078 -33.96713 -33.47937 -33.04888 -31.05675 -29.64087 -28.52459 -27.62437 -26.53411 -26.36221 -25.43965 -22.80618 -21.61202 -20.85889 -20.26156 -19.81394 -17.58025 -17.54846 -16.11951 -15.92071 -15.44311 -15.14552 -14.83608 -14.73686 -14.46634 -14.33516 -14.05496 -13.99485 -13.43273 -13.07396 -12.88664 -12.83439 -12.73116 -12.71178 -12.48194 -12.27523 -12.18122 -12.00742 -11.67036 -11.53400 -11.47467 -11.33535 -11.12845 -11.07354 -10.98650 -10.75064 -10.53104 -10.32382 -10.22662 -9.98561 -9.66869 -9.28364 -8.33266 -7.88298 -7.48459 -7.19451 -6.83638 -4.54206 1.62361 1.67456 2.61158 2.72761 3.02079 3.04410 3.09419 3.22530 3.84833 4.00860 4.45300 4.59606 4.71915 4.88283 5.06336 5.09449 5.26121 5.29423 5.31898 5.43608 5.46822 5.49918 5.55738 5.68265 5.77036 5.83279 5.84359 5.92281 5.97413 6.03446 6.06815 6.10571 6.19897 6.28244 6.40773 6.55148 6.59864 6.67830 6.77168 6.85051 6.92568 7.04299 7.11029 7.15628 7.45253 7.62580 7.64821 7.72261 7.86217 8.13042 8.46463 8.73422 8.75079 10.08267 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.003094 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.667128 B = 9046.788315 C = 9876.988574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.031 4.031 3 C -0.164 4.164 4 C 0.125 3.875 5 O -0.314 6.314 6 C 0.077 3.923 7 C -0.147 4.147 8 C -0.181 4.181 9 C -0.219 4.219 10 C -0.030 4.030 11 C -0.114 4.114 12 C -0.060 4.060 13 C 0.001 3.999 14 C -0.260 4.260 15 C 0.104 3.896 16 F -0.167 7.167 17 C -0.196 4.196 18 C 0.128 3.872 19 C -0.455 4.455 20 H 0.082 0.918 21 C 0.074 3.926 22 N -0.792 5.792 23 Si 0.911 3.089 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.260 1.260 27 C -0.206 4.206 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.132 0.868 45 H 0.283 0.717 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.878 13.259 0.430 15.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.032 4.032 3 C -0.182 4.182 4 C 0.080 3.920 5 O -0.229 6.229 6 C 0.021 3.979 7 C -0.204 4.204 8 C -0.238 4.238 9 C -0.237 4.237 10 C -0.030 4.030 11 C -0.171 4.171 12 C -0.061 4.061 13 C 0.001 3.999 14 C -0.280 4.280 15 C 0.085 3.915 16 F -0.146 7.146 17 C -0.216 4.216 18 C 0.126 3.874 19 C -0.485 4.485 20 H 0.100 0.900 21 C -0.145 4.145 22 N -0.417 5.417 23 Si 0.736 3.264 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.184 1.184 27 C -0.225 4.225 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.149 0.851 45 H 0.094 0.906 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.766 13.207 0.609 15.333 hybrid contribution 0.075 -0.783 -0.353 0.862 sum 7.841 12.424 0.256 14.693 Atomic orbital electron populations 1.20936 0.90744 1.03383 1.02704 1.19723 0.96080 0.91157 0.96203 1.20095 0.90663 0.98147 1.09315 1.18878 0.91528 0.84279 0.97292 1.86067 1.19899 1.28581 1.88363 1.22362 0.78989 0.99377 0.97212 1.21837 1.00782 0.96097 1.01713 1.22399 1.01062 1.03221 0.97167 1.20975 0.99593 0.91614 1.11547 1.19760 0.92808 0.94676 0.95729 1.20835 0.98934 0.94600 1.02718 1.18698 0.91930 0.92722 1.02717 1.17875 0.96082 0.91686 0.94295 1.20204 1.08643 0.98495 1.00645 1.17587 0.93896 0.95329 0.84691 1.91336 1.74494 1.93077 1.55716 1.21409 1.04579 1.00940 0.94679 1.17285 0.87592 0.90683 0.91880 1.19580 1.42163 0.91125 0.95598 0.90032 1.25945 0.92222 0.99227 0.97070 1.69789 1.34552 1.14683 1.22641 0.86254 0.79228 0.79322 0.81645 1.19388 1.20025 1.18372 1.21082 1.05632 0.97367 0.98452 0.91098 0.89552 0.92163 0.85796 0.90941 0.91610 0.90718 0.91712 0.91602 0.91540 0.91257 0.85769 0.90843 0.92514 0.90118 0.88152 0.85063 0.90617 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.60 36.01 0.35 -1.53 16 2 C -0.03 -0.53 5.89 -104.32 -0.61 -1.15 16 3 C -0.16 -2.55 9.63 -39.48 -0.38 -2.93 16 4 C 0.12 1.89 6.59 -39.14 -0.26 1.64 16 5 O -0.31 -4.28 9.80 -19.34 -0.19 -4.47 16 6 C 0.08 0.79 2.85 -26.73 -0.08 0.71 16 7 C -0.15 -1.16 9.56 37.16 0.36 -0.81 16 8 C -0.18 -1.66 9.14 37.16 0.34 -1.32 16 9 C -0.22 -3.29 7.82 -39.48 -0.31 -3.60 16 10 C -0.03 -0.50 5.89 -104.32 -0.61 -1.12 16 11 C -0.11 -1.85 9.03 36.01 0.33 -1.52 16 12 C -0.06 -1.13 5.31 -104.88 -0.56 -1.69 16 13 C 0.00 0.02 3.42 -104.98 -0.36 -0.34 16 14 C -0.26 -5.73 7.80 -38.89 -0.30 -6.03 16 15 C 0.10 2.50 7.28 -39.55 -0.29 2.21 16 16 F -0.17 -3.92 17.26 2.25 0.04 -3.88 16 17 C -0.20 -5.01 8.65 -38.75 -0.34 -5.34 16 18 C 0.13 3.24 5.57 -106.88 -0.59 2.64 16 19 C -0.46 -11.44 9.06 -37.74 -0.34 -11.78 16 20 H 0.08 1.96 7.88 -52.49 -0.41 1.54 16 21 C 0.07 1.77 5.22 -17.35 -0.09 1.68 16 22 N -0.79 -19.84 10.80 55.55 0.60 -19.24 16 23 Si 0.91 17.98 29.58 -169.99 -5.03 12.95 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 27 C -0.21 -4.71 8.52 -38.52 -0.33 -5.04 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.48 5.37 -51.93 -0.28 1.20 16 30 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.07 0.74 6.38 -51.93 -0.33 0.40 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.69 6.77 -51.93 -0.35 0.34 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.12 1.58 5.36 -52.49 -0.28 1.30 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.08 1.49 6.91 -51.93 -0.36 1.13 16 43 H 0.10 2.08 7.89 -52.49 -0.41 1.67 16 44 H 0.13 3.52 6.11 -52.49 -0.32 3.20 16 45 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 46 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -26.75 375.83 -9.53 -36.27 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.53 Total: 8.02 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: -4.08 Total: -35.31 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.60 Total: -19.24 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.19 Total: -4.47 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -26.75 -9.53 -36.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.118 kcal (2) G-P(sol) polarization free energy of solvation -26.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds