Wall clock time and date at job start Tue Mar 31 2020 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37909 * 120.03531 * 2 1 4 4 C 1.38836 * 120.06494 * 179.97438 * 3 2 1 5 5 O 1.35874 * 119.93251 * 179.97438 * 4 3 2 6 6 C 1.42900 * 116.99720 * 185.24483 * 5 4 3 7 7 C 1.53003 * 109.46932 * 156.35331 * 6 5 4 8 8 C 1.53000 * 109.47429 * 276.35228 * 6 5 4 9 9 C 1.38835 * 120.12983 * 359.97438 * 4 3 2 10 10 C 1.37910 * 120.06066 * 0.02562 * 9 4 3 11 11 C 1.50702 * 120.02488 * 180.02562 * 10 9 4 12 12 C 1.39365 * 119.93626 * 359.97438 * 10 9 4 13 13 C 1.48382 * 120.05882 * 179.97438 * 12 10 9 14 14 C 1.39718 * 119.98455 * 114.75309 * 13 12 10 15 15 C 1.38619 * 120.34573 * 179.71814 * 14 13 12 16 16 F 1.35094 * 119.83484 * 180.27363 * 15 14 13 17 17 C 1.37948 * 120.33054 * 0.55140 * 15 14 13 18 18 C 1.40717 * 119.96731 * 359.72757 * 17 15 14 19 19 C 1.41426 * 120.17238 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99680 * 153.52335 * 19 18 17 21 21 C 1.39922 * 120.00012 * 333.52137 * 19 18 17 22 22 N 1.30829 * 119.99857 * 346.98605 * 21 19 18 23 23 Si 1.86797 * 120.00154 * 166.99037 * 21 19 18 24 24 H 1.48500 * 109.47359 * 89.99468 * 23 21 19 25 25 H 1.48502 * 109.47256 * 209.99939 * 23 21 19 26 26 H 1.48507 * 109.46907 * 329.99999 * 23 21 19 27 27 C 1.38754 * 119.99256 * 295.01917 * 13 12 10 28 28 H 1.09002 * 109.46722 * 90.00277 * 1 2 3 29 29 H 1.08997 * 109.46998 * 210.00384 * 1 2 3 30 30 H 1.09004 * 109.46811 * 330.00745 * 1 2 3 31 31 H 1.08001 * 119.96778 * 359.69657 * 3 2 1 32 32 H 1.09000 * 109.47173 * 36.35306 * 6 5 4 33 33 H 1.09000 * 109.47212 * 59.99999 * 7 6 5 34 34 H 1.09002 * 109.46967 * 180.02562 * 7 6 5 35 35 H 1.08995 * 109.46676 * 299.99926 * 7 6 5 36 36 H 1.09000 * 109.47007 * 300.00180 * 8 6 5 37 37 H 1.09003 * 109.47154 * 59.99780 * 8 6 5 38 38 H 1.08993 * 109.47409 * 180.02562 * 8 6 5 39 39 H 1.07998 * 119.96433 * 180.02562 * 9 4 3 40 40 H 1.09003 * 109.46728 * 269.97189 * 11 10 9 41 41 H 1.08997 * 109.47760 * 29.97758 * 11 10 9 42 42 H 1.09005 * 109.46677 * 149.97545 * 11 10 9 43 43 H 1.07992 * 119.82420 * 359.97438 * 14 13 12 44 44 H 1.07992 * 120.01564 * 179.74059 * 17 15 14 45 45 H 0.97005 * 120.00182 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.15787 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1939 0.0000 4 6 3.5856 1.1946 0.0005 5 8 4.2630 2.3725 0.0000 6 6 5.6856 2.3026 -0.1158 7 6 6.2168 3.6222 -0.6793 8 6 6.2981 2.0541 1.2641 9 6 4.2832 -0.0058 0.0016 10 6 3.5982 -1.2028 0.0016 11 6 4.3561 -2.5053 0.0034 12 6 2.2045 -1.2066 0.0011 13 6 1.4648 -2.4929 0.0005 14 6 0.6770 -2.8458 1.0991 15 6 -0.0218 -4.0429 1.1041 16 9 -0.7848 -4.3714 2.1694 17 6 0.0625 -4.9032 0.0290 18 6 0.8565 -4.5640 -1.0821 19 6 0.9456 -5.4425 -2.1869 20 1 1.1680 -5.0535 -3.1695 21 6 0.7457 -6.8156 -2.0067 22 7 0.7303 -7.3216 -0.8003 23 14 0.5010 -7.9262 -3.4886 24 1 1.8185 -8.4309 -3.9519 25 1 -0.3634 -9.0730 -3.1104 26 1 -0.1467 -7.1574 -4.5817 27 6 1.5600 -3.3473 -1.0886 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.6573 2.1292 -0.0050 32 1 5.9560 1.4864 -0.7857 33 1 5.9464 4.4384 -0.0095 34 1 7.3019 3.5687 -0.7681 35 1 5.7805 3.7992 -1.6623 36 1 6.0277 2.8703 1.9339 37 1 5.9196 1.1140 1.6656 38 1 7.3832 2.0012 1.1758 39 1 5.3631 -0.0021 0.0024 40 1 4.5396 -2.8202 -1.0239 41 1 5.3077 -2.3714 0.5178 42 1 3.7692 -3.2665 0.5174 43 1 0.6090 -2.1806 1.9471 44 1 -0.4808 -5.8365 0.0400 45 1 0.5920 -8.2736 -0.6754 46 1 2.1714 -3.0784 -1.9373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236088902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:27 Heat of formation + Delta-G solvation = -76.885050 kcal Electronic energy + Delta-G solvation = -27503.997700 eV Core-core repulsion = 23657.483459 eV Total energy + Delta-G solvation = -3846.514241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.57177 -41.45224 -39.88841 -38.41045 -35.65011 -34.66892 -34.12561 -32.50602 -31.46517 -30.00749 -28.38220 -27.89526 -27.59492 -27.24574 -24.05742 -22.85147 -22.69089 -21.72693 -20.99563 -19.29514 -18.61765 -17.79840 -17.27481 -16.78328 -16.65439 -16.51750 -16.31755 -16.21483 -15.96883 -15.16929 -15.10034 -14.70161 -14.60443 -14.18416 -14.03165 -13.92416 -13.82062 -13.62350 -13.48651 -13.37704 -13.25415 -13.02957 -12.97175 -12.87758 -12.61944 -12.57235 -12.40732 -12.29188 -12.10934 -11.94498 -11.84062 -11.56062 -11.45800 -11.34089 -11.05824 -9.58725 -9.45726 -9.31488 -8.76028 -8.65352 -6.46465 0.31593 0.38805 0.78899 0.95547 1.39336 1.47774 1.54206 2.19093 2.25749 2.60386 2.75861 3.54362 3.66918 3.79676 3.87812 3.91205 4.03303 4.06477 4.16803 4.21340 4.35005 4.49412 4.54911 4.65063 4.70859 4.71711 4.78297 4.78632 4.82557 4.82751 4.86476 4.89357 4.91763 5.05134 5.06748 5.15094 5.21590 5.26155 5.28704 5.35076 5.41056 5.45364 5.66377 5.73480 5.76073 5.85652 5.93264 5.98049 6.26423 6.53501 6.57085 6.85228 6.86492 8.29017 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.003094 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.667128 B = 9046.788315 C = 9876.988574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.035 4.035 3 C -0.168 4.168 4 C 0.133 3.867 5 O -0.321 6.321 6 C 0.065 3.935 7 C -0.144 4.144 8 C -0.179 4.179 9 C -0.214 4.214 10 C -0.037 4.037 11 C -0.111 4.111 12 C -0.096 4.096 13 C 0.022 3.978 14 C -0.256 4.256 15 C 0.095 3.905 16 F -0.167 7.167 17 C -0.223 4.223 18 C 0.108 3.892 19 C -0.486 4.486 20 H 0.085 0.915 21 C 0.033 3.967 22 N -0.825 5.825 23 Si 0.985 3.015 24 H -0.260 1.260 25 H -0.269 1.269 26 H -0.256 1.256 27 C -0.212 4.212 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.149 0.851 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.289 0.711 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.698 15.286 -0.227 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.035 4.035 3 C -0.187 4.187 4 C 0.087 3.913 5 O -0.236 6.236 6 C 0.010 3.990 7 C -0.201 4.201 8 C -0.236 4.236 9 C -0.233 4.233 10 C -0.037 4.037 11 C -0.167 4.167 12 C -0.096 4.096 13 C 0.022 3.978 14 C -0.276 4.276 15 C 0.076 3.924 16 F -0.146 7.146 17 C -0.243 4.243 18 C 0.105 3.895 19 C -0.515 4.515 20 H 0.103 0.897 21 C -0.182 4.182 22 N -0.451 5.451 23 Si 0.805 3.195 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.180 1.180 27 C -0.231 4.231 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.161 0.839 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.167 0.833 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.594 15.255 -0.035 18.021 hybrid contribution -0.380 -1.217 -0.074 1.278 sum 9.214 14.038 -0.109 16.792 Atomic orbital electron populations 1.20936 0.90103 1.03643 1.02990 1.19844 0.96697 0.91034 0.95922 1.20294 0.91203 0.98287 1.08908 1.18999 0.91689 0.84916 0.95663 1.86084 1.21909 1.27747 1.87865 1.22733 0.77191 1.00935 0.98157 1.21865 1.02178 0.94719 1.01313 1.22391 1.02516 1.02417 0.96269 1.21147 1.00798 0.90713 1.10596 1.19875 0.92288 0.95705 0.95797 1.20793 0.99715 0.93494 1.02721 1.18674 0.92768 0.91938 1.06241 1.18036 0.94629 0.92332 0.92827 1.20397 1.08051 0.97734 1.01383 1.17751 0.94321 0.95900 0.84443 1.91323 1.74544 1.93185 1.55557 1.21291 1.06062 1.00962 0.96024 1.17577 0.87996 0.91816 0.92083 1.19864 1.43704 0.92168 0.95768 0.89683 1.26821 0.91175 1.00262 0.99922 1.69864 1.35068 1.15391 1.24740 0.85157 0.79429 0.77164 0.77749 1.18448 1.19392 1.17973 1.21163 1.05587 0.97120 0.99244 0.90786 0.91674 0.89464 0.83889 0.90612 0.91499 0.88294 0.92017 0.91644 0.92890 0.88835 0.83318 0.90792 0.89647 0.93166 0.86726 0.87079 0.90007 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 9.60 71.24 0.68 -2.92 16 2 C -0.03 -1.14 5.89 -19.67 -0.12 -1.26 16 3 C -0.17 -4.89 9.63 22.33 0.22 -4.67 16 4 C 0.13 3.70 6.59 22.56 0.15 3.85 16 5 O -0.32 -7.85 9.80 -92.13 -0.90 -8.76 16 6 C 0.07 1.14 2.85 30.60 0.09 1.22 16 7 C -0.14 -1.80 9.56 71.98 0.69 -1.11 16 8 C -0.18 -2.70 9.14 71.98 0.66 -2.04 16 9 C -0.21 -5.94 7.82 22.34 0.17 -5.77 16 10 C -0.04 -1.20 5.89 -19.67 -0.12 -1.32 16 11 C -0.11 -3.51 9.03 71.24 0.64 -2.86 16 12 C -0.10 -3.55 5.31 -20.03 -0.11 -3.65 16 13 C 0.02 0.95 3.42 -20.09 -0.07 0.88 16 14 C -0.26 -11.52 7.80 22.72 0.18 -11.34 16 15 C 0.09 4.73 7.28 22.29 0.16 4.89 16 16 F -0.17 -8.08 17.26 44.97 0.78 -7.31 16 17 C -0.22 -12.01 8.65 22.81 0.20 -11.81 16 18 C 0.11 5.69 5.57 -21.33 -0.12 5.57 16 19 C -0.49 -25.27 9.06 23.46 0.21 -25.05 16 20 H 0.09 4.20 7.88 -2.91 -0.02 4.17 16 21 C 0.03 1.64 5.22 85.25 0.45 2.09 16 22 N -0.83 -42.86 10.80 21.82 0.24 -42.62 16 23 Si 0.98 37.20 29.58 68.60 2.03 39.22 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 25 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 27 C -0.21 -10.00 8.52 22.96 0.20 -9.80 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 29 H 0.06 2.23 5.37 -2.39 -0.01 2.21 16 30 H 0.09 2.09 8.09 -2.39 -0.02 2.07 16 31 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 32 H 0.08 1.28 6.38 -2.39 -0.02 1.26 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 0.95 6.77 -2.39 -0.02 0.94 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.15 3.31 5.36 -2.91 -0.02 3.29 16 40 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 42 H 0.05 1.89 6.91 -2.38 -0.02 1.87 16 43 H 0.11 4.78 7.89 -2.91 -0.02 4.75 16 44 H 0.11 6.35 6.11 -2.91 -0.02 6.33 16 45 H 0.29 13.63 8.30 -92.70 -0.77 12.86 16 46 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -59.65 375.83 7.29 -52.35 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.99 Total: 32.23 kcal Atomic # 6 Polarization: -69.28 SS G_CDS: 4.16 Total: -65.12 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.24 Total: -42.62 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.90 Total: -8.76 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.78 Total: -7.31 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.22 kcal Total: -59.65 7.29 -52.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.531 kcal (2) G-P(sol) polarization free energy of solvation -59.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds