Wall clock time and date at job start Tue Mar 31 2020 15:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35540 * 116.99629 * 2 1 4 4 C 1.39128 * 120.48281 * 359.97438 * 3 2 1 5 5 C 1.38302 * 118.64345 * 179.97438 * 4 3 2 6 6 C 1.40124 * 119.57033 * 0.02562 * 5 4 3 7 7 C 1.48191 * 119.52010 * 179.97438 * 6 5 4 8 8 C 1.39333 * 120.48381 * 311.80673 * 7 6 5 9 9 N 1.31750 * 120.64888 * 180.25807 * 8 7 6 10 10 C 1.32346 * 121.77870 * 359.42920 * 9 8 7 11 11 O 1.35619 * 119.54184 * 180.27264 * 10 9 8 12 12 C 1.42901 * 117.00067 * 0.29687 * 11 10 9 13 13 C 1.52997 * 109.47512 * 149.99880 * 12 11 10 14 14 C 1.53006 * 109.46881 * 270.00035 * 12 11 10 15 15 C 1.39022 * 120.91797 * 0.57137 * 10 9 8 16 16 C 1.38132 * 119.24375 * 359.72394 * 15 10 9 17 17 C 1.50697 * 120.81389 * 180.02562 * 16 15 10 18 18 N 1.32199 * 120.95515 * 0.25630 * 6 5 4 19 19 C 1.33596 * 121.45987 * 359.48106 * 18 6 5 20 20 C 1.40981 * 119.83699 * 180.26257 * 19 18 6 21 21 H 1.08000 * 119.99770 * 185.22627 * 20 19 18 22 22 C 1.40014 * 119.99709 * 5.23561 * 20 19 18 23 23 N 1.30779 * 120.00192 * 354.42361 * 22 20 19 24 24 Si 1.86797 * 119.99837 * 174.42629 * 22 20 19 25 25 H 1.48506 * 109.47255 * 59.99772 * 24 22 20 26 26 H 1.48506 * 109.47380 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47355 * 299.99602 * 24 22 20 28 28 H 1.09005 * 109.46889 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47223 * 299.99998 * 1 2 3 30 30 H 1.08999 * 109.47550 * 59.99985 * 1 2 3 31 31 H 1.07999 * 120.67852 * 359.96027 * 4 3 2 32 32 H 1.07999 * 120.21673 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.67450 * 359.97438 * 8 7 6 34 34 H 1.08998 * 109.47186 * 29.99941 * 12 11 10 35 35 H 1.09006 * 109.46966 * 59.99594 * 13 12 11 36 36 H 1.09000 * 109.47369 * 179.97438 * 13 12 11 37 37 H 1.09005 * 109.46984 * 299.99765 * 13 12 11 38 38 H 1.08993 * 109.47182 * 59.99746 * 14 12 11 39 39 H 1.09000 * 109.46982 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.46436 * 299.99767 * 14 12 11 41 41 H 1.08001 * 120.38273 * 179.70309 * 15 10 9 42 42 H 1.08999 * 109.47804 * 274.37604 * 17 16 15 43 43 H 1.09007 * 109.46983 * 34.37658 * 17 16 15 44 44 H 1.08999 * 109.47435 * 154.37086 * 17 16 15 45 45 H 0.96999 * 119.99962 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2963 2.3808 -0.0005 5 6 1.9634 3.5924 0.0000 6 6 3.3645 3.6103 0.0006 7 6 4.0781 4.9091 0.0006 8 6 3.7173 5.9139 -0.8948 9 7 4.3528 7.0679 -0.9010 10 6 5.3419 7.3235 -0.0596 11 8 5.9612 8.5293 -0.1020 12 6 5.4888 9.4675 -1.0709 13 6 5.6995 10.8900 -0.5485 14 6 6.2630 9.2843 -2.3779 15 6 5.7590 6.3708 0.8630 16 6 5.1243 5.1445 0.9005 17 6 5.5472 4.0863 1.8866 18 7 4.0590 2.4855 -0.0045 19 6 3.4556 1.2935 0.0000 20 6 4.2299 0.1154 -0.0001 21 1 3.7478 -0.8476 -0.0817 22 6 5.6238 0.1938 0.1058 23 7 6.2159 1.3599 0.0949 24 14 6.6379 -1.3671 0.2626 25 1 6.4163 -2.2233 -0.9304 26 1 8.0774 -1.0148 0.3579 27 1 6.2263 -2.1042 1.4842 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 0.2169 2.3461 -0.0016 32 1 1.4080 4.5186 0.0000 33 1 2.9117 5.7433 -1.5936 34 1 4.4270 9.3002 -1.2511 35 1 6.7614 11.0573 -0.3682 36 1 5.3396 11.6056 -1.2877 37 1 5.1479 11.0205 0.3826 38 1 6.1130 8.2709 -2.7501 39 1 5.9025 9.9996 -3.1171 40 1 7.3249 9.4516 -2.1975 41 1 6.5703 6.5868 1.5424 42 1 6.3744 3.5115 1.4703 43 1 5.8654 4.5610 2.8148 44 1 4.7076 3.4210 2.0880 45 1 7.1816 1.4142 0.1679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236583509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:41 Heat of formation + Delta-G solvation = -13.431153 kcal Electronic energy + Delta-G solvation = -27724.749697 eV Core-core repulsion = 23900.906986 eV Total energy + Delta-G solvation = -3823.842712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.30486 -39.00768 -38.03993 -36.60109 -33.85148 -33.28450 -33.10146 -30.84797 -30.38773 -28.52659 -27.40534 -27.26226 -26.57858 -25.31761 -23.18764 -22.61272 -21.54875 -20.69881 -20.06045 -17.70009 -17.58077 -16.78412 -16.44811 -15.94340 -15.43839 -15.10309 -14.80093 -14.71838 -14.40914 -14.22324 -13.72667 -13.34164 -13.17783 -13.03006 -12.63915 -12.51304 -12.40183 -12.37031 -12.25495 -12.07252 -11.98822 -11.70515 -11.44228 -11.32220 -11.20137 -11.01394 -10.83364 -10.71088 -10.60947 -10.51186 -10.35887 -9.92340 -9.44116 -9.12685 -8.90250 -8.23541 -8.07666 -7.76250 -7.01744 -6.48917 -4.45082 1.55808 1.76566 2.68629 2.86740 3.08033 3.10682 3.16724 3.27884 3.93431 4.25193 4.36722 4.67552 4.68639 4.88508 4.99125 5.23533 5.31884 5.39145 5.45656 5.49415 5.54547 5.66462 5.68476 5.69098 5.79921 5.81072 5.87525 5.91681 5.99790 6.06759 6.07540 6.19584 6.20738 6.26048 6.38241 6.51357 6.66169 6.75257 6.81139 7.02905 7.09948 7.24009 7.32419 7.46666 7.64375 7.80745 8.14402 8.23250 8.31329 8.65083 8.93733 9.92955 10.23957 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.003539 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.091363 B = 7910.410149 C = 9370.523674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C -0.028 4.028 4 C -0.146 4.146 5 C -0.270 4.270 6 C 0.158 3.842 7 C -0.091 4.091 8 C 0.146 3.854 9 N -0.549 5.549 10 C 0.309 3.691 11 O -0.307 6.307 12 C 0.082 3.918 13 C -0.149 4.149 14 C -0.167 4.167 15 C -0.201 4.201 16 C 0.029 3.971 17 C -0.102 4.102 18 N -0.445 5.445 19 C 0.252 3.748 20 C -0.411 4.411 21 H 0.090 0.910 22 C 0.069 3.931 23 N -0.712 5.712 24 Si 0.908 3.092 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.265 1.265 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.047 0.953 44 H 0.078 0.922 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 9.512 0.098 9.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.076 4.076 4 C -0.170 4.170 5 C -0.294 4.294 6 C 0.016 3.984 7 C -0.094 4.094 8 C -0.010 4.010 9 N -0.272 5.272 10 C 0.130 3.870 11 O -0.216 6.216 12 C 0.025 3.975 13 C -0.206 4.206 14 C -0.225 4.225 15 C -0.222 4.222 16 C 0.021 3.979 17 C -0.158 4.158 18 N -0.159 5.159 19 C 0.125 3.875 20 C -0.442 4.442 21 H 0.108 0.892 22 C -0.156 4.156 23 N -0.334 5.334 24 Si 0.732 3.268 25 H -0.190 1.190 26 H -0.203 1.203 27 H -0.189 1.189 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.173 0.827 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.151 0.849 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.278 10.185 -0.340 10.194 hybrid contribution -0.760 -1.042 0.360 1.339 sum -1.037 9.143 0.019 9.202 Atomic orbital electron populations 1.22760 0.81664 1.01913 0.99957 1.85946 1.18343 1.27857 1.90030 1.20373 0.93718 0.83228 1.10324 1.20851 0.97768 0.92559 1.05870 1.20938 0.93851 0.96231 1.18342 1.19354 0.89186 0.91512 0.98358 1.19441 0.97574 0.94465 0.97907 1.22385 0.96430 0.86569 0.95650 1.67124 1.10670 1.23874 1.25553 1.19698 0.89865 0.85919 0.91473 1.86234 1.57235 1.21620 1.56464 1.22225 1.00150 0.87434 0.87664 1.21893 1.02837 0.94089 1.01813 1.22202 1.00613 1.02916 0.96765 1.20769 1.05046 0.93237 1.03120 1.20246 0.90753 0.92878 0.93974 1.20784 1.04230 0.96029 0.94767 1.69069 1.34446 0.95036 1.17393 1.18133 0.84954 0.92080 0.92381 1.19472 0.90840 0.93070 1.40855 0.89210 1.26027 0.98550 0.97227 0.93798 1.70117 1.10357 1.24512 1.28408 0.86375 0.78362 0.82074 0.79978 1.19002 1.20289 1.18941 0.89863 0.94157 0.94165 0.87814 0.88487 0.82727 0.89404 0.91872 0.90847 0.91994 0.91808 0.91524 0.92277 0.84882 0.88360 0.93396 0.90348 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.83 101.05 0.99 1.53 16 2 O -0.31 -6.79 9.61 -18.32 -0.18 -6.97 16 3 C -0.03 -0.66 6.74 -38.05 -0.26 -0.92 16 4 C -0.15 -3.16 9.11 -39.23 -0.36 -3.52 16 5 C -0.27 -5.82 9.50 -38.85 -0.37 -6.19 16 6 C 0.16 3.65 5.49 -82.91 -0.46 3.19 16 7 C -0.09 -1.87 5.61 -104.74 -0.59 -2.46 16 8 C 0.15 2.72 10.62 -17.18 -0.18 2.53 16 9 N -0.55 -9.85 8.62 -13.02 -0.11 -9.96 16 10 C 0.31 5.45 7.46 -17.04 -0.13 5.32 16 11 O -0.31 -4.85 9.76 -18.55 -0.18 -5.04 16 12 C 0.08 1.05 3.10 -26.73 -0.08 0.97 16 13 C -0.15 -1.45 9.56 37.16 0.36 -1.09 16 14 C -0.17 -1.97 9.53 37.16 0.35 -1.62 16 15 C -0.20 -3.56 9.74 -39.33 -0.38 -3.94 16 16 C 0.03 0.58 5.94 -104.00 -0.62 -0.04 16 17 C -0.10 -1.96 9.14 36.00 0.33 -1.63 16 18 N -0.44 -11.33 6.19 -7.57 -0.05 -11.37 16 19 C 0.25 6.59 6.56 -84.86 -0.56 6.04 16 20 C -0.41 -10.63 8.93 -37.88 -0.34 -10.97 16 21 H 0.09 2.28 7.33 -52.49 -0.38 1.89 16 22 C 0.07 1.67 5.49 -17.33 -0.10 1.58 16 23 N -0.71 -17.48 10.67 55.55 0.59 -16.89 16 24 Si 0.91 18.11 29.56 -169.99 -5.03 13.09 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 27 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 30 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 31 H 0.10 1.93 6.43 -52.49 -0.34 1.59 16 32 H 0.10 1.87 8.00 -52.49 -0.42 1.45 16 33 H 0.16 2.62 8.00 -52.48 -0.42 2.20 16 34 H 0.09 1.21 6.98 -51.93 -0.36 0.84 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 42 H 0.10 2.02 7.32 -51.93 -0.38 1.64 16 43 H 0.05 0.77 8.13 -51.92 -0.42 0.35 16 44 H 0.08 1.71 6.50 -51.93 -0.34 1.37 16 45 H 0.27 6.15 8.29 -40.82 -0.34 5.82 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -28.17 375.48 -8.05 -36.21 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.38 Total: 6.50 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.38 Total: -11.23 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.43 Total: -38.22 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.36 Total: -12.00 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.17 -8.05 -36.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236583509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.784 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds