Wall clock time and date at job start Tue Mar 31 2020 15:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35540 * 116.99629 * 2 1 4 4 C 1.39128 * 120.48281 * 359.97438 * 3 2 1 5 5 C 1.38302 * 118.64345 * 179.97438 * 4 3 2 6 6 C 1.40124 * 119.57033 * 0.02562 * 5 4 3 7 7 C 1.48191 * 119.52010 * 179.97438 * 6 5 4 8 8 C 1.39333 * 120.48381 * 311.80673 * 7 6 5 9 9 N 1.31750 * 120.64888 * 180.25807 * 8 7 6 10 10 C 1.32346 * 121.77870 * 359.42920 * 9 8 7 11 11 O 1.35619 * 119.54184 * 180.27264 * 10 9 8 12 12 C 1.42901 * 117.00067 * 0.29687 * 11 10 9 13 13 C 1.52997 * 109.47512 * 149.99880 * 12 11 10 14 14 C 1.53006 * 109.46881 * 270.00035 * 12 11 10 15 15 C 1.39022 * 120.91797 * 0.57137 * 10 9 8 16 16 C 1.38132 * 119.24375 * 359.72394 * 15 10 9 17 17 C 1.50697 * 120.81389 * 180.02562 * 16 15 10 18 18 N 1.32199 * 120.95515 * 0.25630 * 6 5 4 19 19 C 1.33596 * 121.45987 * 359.48106 * 18 6 5 20 20 C 1.40981 * 119.83699 * 180.26257 * 19 18 6 21 21 H 1.08000 * 119.99770 * 185.22627 * 20 19 18 22 22 C 1.40014 * 119.99709 * 5.23561 * 20 19 18 23 23 N 1.30779 * 120.00192 * 354.42361 * 22 20 19 24 24 Si 1.86797 * 119.99837 * 174.42629 * 22 20 19 25 25 H 1.48506 * 109.47255 * 59.99772 * 24 22 20 26 26 H 1.48506 * 109.47380 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47355 * 299.99602 * 24 22 20 28 28 H 1.09005 * 109.46889 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47223 * 299.99998 * 1 2 3 30 30 H 1.08999 * 109.47550 * 59.99985 * 1 2 3 31 31 H 1.07999 * 120.67852 * 359.96027 * 4 3 2 32 32 H 1.07999 * 120.21673 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.67450 * 359.97438 * 8 7 6 34 34 H 1.08998 * 109.47186 * 29.99941 * 12 11 10 35 35 H 1.09006 * 109.46966 * 59.99594 * 13 12 11 36 36 H 1.09000 * 109.47369 * 179.97438 * 13 12 11 37 37 H 1.09005 * 109.46984 * 299.99765 * 13 12 11 38 38 H 1.08993 * 109.47182 * 59.99746 * 14 12 11 39 39 H 1.09000 * 109.46982 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.46436 * 299.99767 * 14 12 11 41 41 H 1.08001 * 120.38273 * 179.70309 * 15 10 9 42 42 H 1.08999 * 109.47804 * 274.37604 * 17 16 15 43 43 H 1.09007 * 109.46983 * 34.37658 * 17 16 15 44 44 H 1.08999 * 109.47435 * 154.37086 * 17 16 15 45 45 H 0.96999 * 119.99962 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2963 2.3808 -0.0005 5 6 1.9634 3.5924 0.0000 6 6 3.3645 3.6103 0.0006 7 6 4.0781 4.9091 0.0006 8 6 3.7173 5.9139 -0.8948 9 7 4.3528 7.0679 -0.9010 10 6 5.3419 7.3235 -0.0596 11 8 5.9612 8.5293 -0.1020 12 6 5.4888 9.4675 -1.0709 13 6 5.6995 10.8900 -0.5485 14 6 6.2630 9.2843 -2.3779 15 6 5.7590 6.3708 0.8630 16 6 5.1243 5.1445 0.9005 17 6 5.5472 4.0863 1.8866 18 7 4.0590 2.4855 -0.0045 19 6 3.4556 1.2935 0.0000 20 6 4.2299 0.1154 -0.0001 21 1 3.7478 -0.8476 -0.0817 22 6 5.6238 0.1938 0.1058 23 7 6.2159 1.3599 0.0949 24 14 6.6379 -1.3671 0.2626 25 1 6.4163 -2.2233 -0.9304 26 1 8.0774 -1.0148 0.3579 27 1 6.2263 -2.1042 1.4842 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 0.2169 2.3461 -0.0016 32 1 1.4080 4.5186 0.0000 33 1 2.9117 5.7433 -1.5936 34 1 4.4270 9.3002 -1.2511 35 1 6.7614 11.0573 -0.3682 36 1 5.3396 11.6056 -1.2877 37 1 5.1479 11.0205 0.3826 38 1 6.1130 8.2709 -2.7501 39 1 5.9025 9.9996 -3.1171 40 1 7.3249 9.4516 -2.1975 41 1 6.5703 6.5868 1.5424 42 1 6.3744 3.5115 1.4703 43 1 5.8654 4.5610 2.8148 44 1 4.7076 3.4210 2.0880 45 1 7.1816 1.4142 0.1679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236583509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:40 Heat of formation + Delta-G solvation = -29.011174 kcal Electronic energy + Delta-G solvation = -27725.425298 eV Core-core repulsion = 23900.906986 eV Total energy + Delta-G solvation = -3824.518312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70550 -40.64718 -39.38922 -38.21580 -35.58038 -34.76765 -34.21167 -32.46467 -32.08005 -30.09947 -28.88635 -28.15185 -28.05076 -27.00789 -24.69063 -23.92525 -23.24021 -22.22386 -21.38460 -19.37692 -18.97304 -18.41375 -17.89922 -17.55897 -16.79445 -16.59863 -16.36588 -16.29969 -15.68401 -15.39835 -15.09739 -14.85163 -14.67300 -14.43982 -14.18164 -13.97106 -13.84793 -13.60695 -13.49466 -13.22968 -13.13243 -13.05561 -12.91918 -12.81299 -12.77099 -12.62411 -12.33536 -12.11236 -11.96679 -11.80345 -11.66407 -11.58769 -11.18413 -10.57399 -10.39127 -9.98342 -9.65417 -9.48012 -8.71521 -8.25609 -6.31335 0.06045 0.28764 0.95696 1.13895 1.44119 1.53509 1.56371 2.06860 2.27328 2.74482 2.85824 2.93384 3.33684 3.74738 3.83223 3.92575 3.96873 4.07475 4.14949 4.21242 4.30521 4.34747 4.38035 4.48967 4.55486 4.61158 4.70939 4.74497 4.77378 4.83879 4.85670 4.88227 4.89802 4.96123 4.99006 5.06619 5.22973 5.28984 5.31977 5.34771 5.51134 5.58818 5.67589 5.73521 6.09105 6.31670 6.36035 6.43295 6.85161 6.87103 7.17716 8.13805 8.48239 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.003539 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.091363 B = 7910.410149 C = 9370.523674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C -0.045 4.045 4 C -0.145 4.145 5 C -0.265 4.265 6 C 0.143 3.857 7 C -0.117 4.117 8 C 0.150 3.850 9 N -0.547 5.547 10 C 0.311 3.689 11 O -0.310 6.310 12 C 0.071 3.929 13 C -0.143 4.143 14 C -0.163 4.163 15 C -0.200 4.200 16 C 0.018 3.982 17 C -0.089 4.089 18 N -0.464 5.464 19 C 0.217 3.783 20 C -0.449 4.449 21 H 0.081 0.919 22 C 0.032 3.968 23 N -0.738 5.738 24 Si 0.977 3.023 25 H -0.265 1.265 26 H -0.267 1.267 27 H -0.264 1.264 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.137 0.863 32 H 0.123 0.877 33 H 0.170 0.830 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.037 0.963 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.156 0.844 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 11.259 0.028 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.247 6.247 3 C -0.094 4.094 4 C -0.169 4.169 5 C -0.288 4.288 6 C 0.001 3.999 7 C -0.121 4.121 8 C -0.006 4.006 9 N -0.271 5.271 10 C 0.132 3.868 11 O -0.218 6.218 12 C 0.016 3.984 13 C -0.200 4.200 14 C -0.221 4.221 15 C -0.220 4.220 16 C 0.011 3.989 17 C -0.146 4.146 18 N -0.179 5.179 19 C 0.089 3.911 20 C -0.481 4.481 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.360 5.360 24 Si 0.798 3.202 25 H -0.190 1.190 26 H -0.191 1.191 27 H -0.188 1.188 28 H 0.131 0.869 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.187 0.813 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.173 0.827 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.533 11.964 -0.412 11.983 hybrid contribution -0.817 -1.408 0.349 1.665 sum -1.349 10.556 -0.064 10.642 Atomic orbital electron populations 1.23105 0.78630 1.04336 1.00938 1.85891 1.21501 1.27271 1.90052 1.20443 0.93545 0.84650 1.10758 1.21201 0.99374 0.91716 1.04578 1.21307 0.93684 0.97387 1.16467 1.19784 0.90189 0.91842 0.98089 1.19493 0.98863 0.94114 0.99582 1.22543 0.96609 0.86244 0.95208 1.67209 1.10844 1.23377 1.25635 1.19886 0.89406 0.86593 0.90905 1.86247 1.57072 1.21149 1.57367 1.22580 0.99706 0.88349 0.87811 1.21898 1.03398 0.92195 1.02460 1.22184 1.01012 1.02116 0.96777 1.20933 1.05202 0.92417 1.03446 1.20325 0.90958 0.93630 0.94036 1.20599 1.02259 0.95567 0.96128 1.69013 1.35556 0.95530 1.17813 1.18534 0.86603 0.92620 0.93297 1.19617 0.92121 0.92879 1.43469 0.90097 1.26732 0.98899 1.00292 0.93126 1.70196 1.10717 1.26155 1.28966 0.85339 0.77070 0.78106 0.79654 1.18986 1.19137 1.18816 0.86916 0.93053 0.93034 0.84556 0.85896 0.81330 0.90370 0.91296 0.88315 0.92053 0.94335 0.88961 0.91681 0.82657 0.90043 0.90387 0.93513 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.83 113.37 1.11 1.88 16 2 O -0.33 -14.83 9.61 -88.45 -0.85 -15.68 16 3 C -0.05 -2.22 6.74 23.26 0.16 -2.06 16 4 C -0.14 -6.16 9.11 22.50 0.21 -5.95 16 5 C -0.27 -11.33 9.50 22.74 0.22 -11.12 16 6 C 0.14 6.71 5.49 42.19 0.23 6.95 16 7 C -0.12 -4.88 5.61 -19.94 -0.11 -4.99 16 8 C 0.15 5.52 10.62 84.97 0.90 6.42 16 9 N -0.55 -19.09 8.62 -307.95 -2.65 -21.74 16 10 C 0.31 10.58 7.46 84.80 0.63 11.21 16 11 O -0.31 -9.26 9.76 -89.30 -0.87 -10.13 16 12 C 0.07 1.68 3.10 30.60 0.09 1.78 16 13 C -0.14 -2.35 9.56 71.98 0.69 -1.66 16 14 C -0.16 -3.52 9.53 71.98 0.69 -2.84 16 15 C -0.20 -6.86 9.74 22.43 0.22 -6.64 16 16 C 0.02 0.72 5.94 -19.46 -0.12 0.61 16 17 C -0.09 -3.51 9.14 71.24 0.65 -2.86 16 18 N -0.46 -24.60 6.19 -177.86 -1.10 -25.70 16 19 C 0.22 11.88 6.56 40.32 0.26 12.14 16 20 C -0.45 -24.40 8.93 23.37 0.21 -24.19 16 21 H 0.08 4.34 7.33 -2.91 -0.02 4.32 16 22 C 0.03 1.60 5.49 85.28 0.47 2.07 16 23 N -0.74 -37.68 10.67 21.84 0.23 -37.45 16 24 Si 0.98 38.24 29.56 68.60 2.03 40.27 16 25 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 27 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 28 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 29 H 0.05 1.44 7.69 -2.39 -0.02 1.43 16 30 H 0.05 1.45 7.69 -2.39 -0.02 1.43 16 31 H 0.14 4.76 6.43 -2.91 -0.02 4.74 16 32 H 0.12 4.52 8.00 -2.91 -0.02 4.49 16 33 H 0.17 5.57 8.00 -2.91 -0.02 5.54 16 34 H 0.08 2.01 6.98 -2.39 -0.02 1.99 16 35 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.08 3.48 7.32 -2.39 -0.02 3.46 16 43 H 0.08 2.49 8.13 -2.38 -0.02 2.47 16 44 H 0.05 2.12 6.50 -2.39 -0.02 2.11 16 45 H 0.28 12.94 8.29 -92.71 -0.77 12.17 16 Total: -1.00 -63.79 375.48 4.30 -59.49 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 1.00 Total: 30.20 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 6.51 Total: -19.25 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -3.52 Total: -84.90 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.72 Total: -25.81 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -63.79 4.30 -59.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236583509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.481 kcal (2) G-P(sol) polarization free energy of solvation -63.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds