Wall clock time and date at job start Tue Mar 31 2020 14:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35786 * 117.00221 * 2 1 4 4 C 1.38491 * 120.11890 * 0.23151 * 3 2 1 5 5 C 1.38434 * 120.05564 * 180.25354 * 4 3 2 6 6 F 1.35106 * 119.84106 * 179.72073 * 5 4 3 7 7 C 1.38775 * 120.31723 * 359.74467 * 5 4 3 8 8 C 1.50704 * 119.87737 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47158 * 120.02309 * 8 7 5 10 10 C 1.53001 * 109.47058 * 240.02463 * 8 7 5 11 11 C 1.37799 * 120.24907 * 0.02562 * 7 5 4 12 12 C 1.39652 * 119.93456 * 359.97434 * 11 7 5 13 13 C 1.47803 * 120.15595 * 179.97438 * 12 11 7 14 14 C 1.40048 * 119.89187 * 310.00186 * 13 12 11 15 15 C 1.36177 * 120.11326 * 179.97438 * 14 13 12 16 16 C 1.40983 * 119.88768 * 0.02734 * 15 14 13 17 17 C 1.40984 * 120.11230 * 179.72171 * 16 15 14 18 18 H 1.07994 * 119.99618 * 153.62145 * 17 16 15 19 19 C 1.39969 * 119.99728 * 333.62625 * 17 16 15 20 20 N 1.30822 * 120.00186 * 343.80649 * 19 17 16 21 21 Si 1.86800 * 119.99651 * 163.80814 * 19 17 16 22 22 H 1.48500 * 109.47281 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46890 * 119.99998 * 21 19 17 24 24 H 1.48497 * 109.47038 * 239.99762 * 21 19 17 25 25 C 1.40946 * 119.77685 * 359.97438 * 16 15 14 26 26 C 1.50703 * 120.05613 * 179.97438 * 25 16 15 27 27 C 1.36215 * 119.88831 * 359.97438 * 25 16 15 28 28 H 1.09003 * 109.47031 * 300.00016 * 1 2 3 29 29 H 1.09007 * 109.47319 * 59.99856 * 1 2 3 30 30 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.97394 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47079 * 0.02562 * 8 7 5 33 33 H 1.09003 * 109.47425 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47311 * 300.00227 * 9 8 7 35 35 H 1.09007 * 109.47298 * 60.00184 * 9 8 7 36 36 H 1.09004 * 109.47254 * 60.00331 * 10 8 7 37 37 H 1.09003 * 109.46929 * 180.02562 * 10 8 7 38 38 H 1.08993 * 109.47269 * 299.99695 * 10 8 7 39 39 H 1.08007 * 120.03391 * 179.97438 * 11 7 5 40 40 H 1.08000 * 119.94439 * 359.97438 * 14 13 12 41 41 H 1.08001 * 120.05816 * 180.02562 * 15 14 13 42 42 H 0.97005 * 120.00402 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47513 * 89.99377 * 26 25 16 44 44 H 1.08996 * 109.46684 * 210.00054 * 26 25 16 45 45 H 1.09005 * 109.46864 * 329.99779 * 26 25 16 46 46 H 1.07992 * 119.94198 * 180.02562 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.2936 2.3729 0.0048 5 6 1.9235 3.6056 -0.0005 6 9 1.1858 4.7375 -0.0014 7 6 3.3090 3.6844 -0.0053 8 6 3.9844 5.0316 -0.0117 9 6 4.8622 5.1679 1.2339 10 6 4.8530 5.1607 -1.2645 11 6 4.0696 2.5353 -0.0054 12 6 3.4451 1.2862 -0.0001 13 6 4.2561 0.0506 -0.0007 14 6 5.2877 -0.1067 -0.9348 15 6 6.0381 -1.2430 -0.9391 16 6 5.7747 -2.2624 -0.0015 17 6 6.5448 -3.4433 -0.0055 18 1 6.6618 -4.0146 0.9034 19 6 7.1577 -3.8751 -1.1875 20 7 6.7752 -3.3862 -2.3390 21 14 8.5218 -5.1495 -1.1205 22 1 8.7661 -5.5395 0.2914 23 1 8.1200 -6.3461 -1.9027 24 1 9.7641 -4.5755 -1.6970 25 6 4.7353 -2.0993 0.9364 26 6 4.4478 -3.1852 1.9410 27 6 3.9911 -0.9584 0.9332 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2151 2.3182 0.0090 32 1 3.2285 5.8169 -0.0111 33 1 5.3511 6.1421 1.2292 34 1 4.2434 5.0759 2.1265 35 1 5.6182 4.3825 1.2334 36 1 4.2276 5.0637 -2.1519 37 1 5.3419 6.1350 -1.2688 38 1 5.6089 4.3755 -1.2651 39 1 5.1477 2.6006 -0.0096 40 1 5.4885 0.6746 -1.6529 41 1 6.8337 -1.3632 -1.6595 42 1 7.2002 -3.6851 -3.1582 43 1 5.0395 -3.0141 2.8403 44 1 3.3881 -3.1733 2.1955 45 1 4.7081 -4.1536 1.5137 46 1 3.1947 -0.8323 1.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241789900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:21 Heat of formation + Delta-G solvation = -65.050767 kcal Electronic energy + Delta-G solvation = -27739.240901 eV Core-core repulsion = 23893.239833 eV Total energy + Delta-G solvation = -3846.001068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.69758 -39.93845 -37.84654 -37.56763 -34.79440 -33.74465 -32.03194 -30.53550 -29.28252 -28.59293 -27.09298 -27.06196 -26.16824 -24.70326 -22.98546 -22.31421 -20.90284 -19.75308 -19.18217 -18.16278 -17.24078 -16.77241 -15.73373 -15.69264 -15.54362 -15.20343 -15.13786 -14.34048 -14.19030 -13.92287 -13.85410 -13.67662 -13.24815 -13.15794 -12.67908 -12.60990 -12.46042 -12.25703 -12.00772 -11.98254 -11.76592 -11.57455 -11.35315 -11.22867 -11.17099 -11.08026 -10.97214 -10.72559 -10.68885 -10.55876 -10.41415 -10.26245 -9.52580 -9.38364 -9.19863 -8.56714 -7.89082 -7.36288 -7.03870 -6.80002 -4.36886 1.38598 1.57733 2.71226 3.03533 3.08547 3.10559 3.14945 3.54984 3.87157 3.92734 4.48852 4.57331 4.71848 4.86248 5.09287 5.15457 5.23936 5.26253 5.36643 5.48330 5.55594 5.60018 5.65422 5.66152 5.82755 5.88324 5.94675 6.00243 6.21791 6.25485 6.26370 6.27860 6.34986 6.45064 6.47206 6.59194 6.69071 6.69986 6.76088 6.97047 7.02236 7.10677 7.27574 7.39011 7.64593 7.67522 7.93266 8.04059 8.10235 8.27127 8.58397 8.83363 8.94781 10.10197 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.003417 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.646522 B = 8191.439228 C = 9293.474194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.291 6.291 3 C 0.142 3.858 4 C -0.241 4.241 5 C 0.104 3.896 6 F -0.146 7.146 7 C -0.141 4.141 8 C -0.051 4.051 9 C -0.143 4.143 10 C -0.143 4.143 11 C -0.062 4.062 12 C -0.018 4.018 13 C -0.191 4.191 14 C -0.080 4.080 15 C -0.168 4.168 16 C 0.123 3.877 17 C -0.450 4.450 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.785 5.785 21 Si 0.907 3.093 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.271 1.271 25 C -0.202 4.202 26 C -0.084 4.084 27 C -0.046 4.046 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.135 0.865 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.281 0.719 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.060 0.940 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 10.289 2.792 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.203 6.203 3 C 0.096 3.904 4 C -0.261 4.261 5 C 0.085 3.915 6 F -0.125 7.125 7 C -0.142 4.142 8 C -0.069 4.069 9 C -0.200 4.200 10 C -0.201 4.201 11 C -0.080 4.080 12 C -0.019 4.019 13 C -0.192 4.192 14 C -0.098 4.098 15 C -0.187 4.187 16 C 0.120 3.880 17 C -0.479 4.479 18 H 0.100 0.900 19 C -0.144 4.144 20 N -0.410 5.410 21 Si 0.731 3.269 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.204 4.204 26 C -0.141 4.141 27 C -0.065 4.065 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.153 0.847 40 H 0.105 0.895 41 H 0.134 0.866 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.172 10.089 2.533 12.096 hybrid contribution -0.025 -0.240 -0.235 0.337 sum -6.197 9.849 2.298 11.861 Atomic orbital electron populations 1.23046 0.79532 1.03764 1.00752 1.86279 1.20124 1.25875 1.88009 1.18912 0.91717 0.83496 0.96310 1.20920 1.00345 0.91218 1.13609 1.17116 0.88409 0.81185 1.04770 1.91413 1.77130 1.49682 1.94255 1.19613 0.91143 0.96353 1.07126 1.19945 0.97471 0.93471 0.96044 1.21853 0.99561 1.01661 0.96944 1.21857 0.99619 1.01677 0.96903 1.20825 0.99798 0.89340 0.98047 1.18465 0.88924 0.94240 1.00221 1.17773 1.02824 0.94718 1.03866 1.20410 0.95353 0.97254 0.96821 1.20922 1.01978 0.93011 1.02784 1.17551 0.88849 0.92028 0.89567 1.19648 1.25468 1.06900 0.95907 0.89993 1.25971 0.96442 0.97070 0.94906 1.69839 1.35039 1.37327 0.98766 0.86281 0.80736 0.80136 0.79755 1.18287 1.19937 1.19651 1.19417 1.00420 0.96808 1.03732 1.20392 0.98572 0.98299 0.96793 1.20100 0.97131 0.92640 0.96589 0.93088 0.93055 0.88337 0.85008 0.90591 0.92605 0.92684 0.92050 0.92661 0.92589 0.92059 0.84707 0.89508 0.86561 0.90784 0.94167 0.94400 0.92116 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.29 16 2 O -0.29 -5.11 8.85 -19.07 -0.17 -5.28 16 3 C 0.14 2.51 6.60 -38.76 -0.26 2.25 16 4 C -0.24 -3.73 9.01 -39.42 -0.35 -4.09 16 5 C 0.10 1.62 7.25 -39.31 -0.28 1.33 16 6 F -0.15 -2.17 16.17 2.25 0.04 -2.14 16 7 C -0.14 -2.12 4.79 -104.58 -0.50 -2.62 16 8 C -0.05 -0.63 3.07 -91.77 -0.28 -0.91 16 9 C -0.14 -1.60 9.00 37.16 0.33 -1.26 16 10 C -0.14 -1.62 9.00 37.16 0.33 -1.29 16 11 C -0.06 -1.03 8.15 -39.21 -0.32 -1.35 16 12 C -0.02 -0.34 5.48 -104.73 -0.57 -0.91 16 13 C -0.19 -4.20 5.30 -104.64 -0.55 -4.75 16 14 C -0.08 -1.84 9.43 -39.64 -0.37 -2.21 16 15 C -0.17 -4.24 8.60 -39.28 -0.34 -4.58 16 16 C 0.12 3.16 5.56 -106.79 -0.59 2.56 16 17 C -0.45 -11.42 8.09 -37.89 -0.31 -11.73 16 18 H 0.08 2.00 6.88 -52.49 -0.36 1.64 16 19 C 0.07 1.81 5.15 -17.33 -0.09 1.72 16 20 N -0.79 -19.70 10.97 55.55 0.61 -19.09 16 21 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 C -0.20 -4.82 5.90 -104.32 -0.62 -5.44 16 26 C -0.08 -1.72 9.39 36.01 0.34 -1.39 16 27 C -0.05 -1.05 8.35 -39.64 -0.33 -1.38 16 28 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 29 H 0.05 0.56 7.67 -51.92 -0.40 0.16 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.13 1.72 6.29 -52.49 -0.33 1.39 16 32 H 0.08 0.93 7.11 -51.93 -0.37 0.56 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.71 7.38 -51.93 -0.38 0.32 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.71 7.37 -51.93 -0.38 0.33 16 39 H 0.14 2.12 7.05 -52.48 -0.37 1.75 16 40 H 0.09 1.82 8.03 -52.49 -0.42 1.40 16 41 H 0.12 3.03 6.23 -52.49 -0.33 2.70 16 42 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 45 H 0.06 1.27 6.77 -51.93 -0.35 0.92 16 46 H 0.09 1.87 7.69 -52.49 -0.40 1.47 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -27.25 376.20 -9.25 -36.50 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.59 Total: 6.10 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: -3.77 Total: -34.74 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.17 Total: -5.28 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.25 -9.25 -36.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241789900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.552 kcal (2) G-P(sol) polarization free energy of solvation -27.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds