Wall clock time and date at job start Tue Mar 31 2020 14:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35786 * 117.00221 * 2 1 4 4 C 1.38491 * 120.11890 * 0.23151 * 3 2 1 5 5 C 1.38434 * 120.05564 * 180.25354 * 4 3 2 6 6 F 1.35106 * 119.84106 * 179.72073 * 5 4 3 7 7 C 1.38775 * 120.31723 * 359.74467 * 5 4 3 8 8 C 1.50704 * 119.87737 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47158 * 120.02309 * 8 7 5 10 10 C 1.53001 * 109.47058 * 240.02463 * 8 7 5 11 11 C 1.37799 * 120.24907 * 0.02562 * 7 5 4 12 12 C 1.39652 * 119.93456 * 359.97434 * 11 7 5 13 13 C 1.47803 * 120.15595 * 179.97438 * 12 11 7 14 14 C 1.40048 * 119.89187 * 310.00186 * 13 12 11 15 15 C 1.36177 * 120.11326 * 179.97438 * 14 13 12 16 16 C 1.40983 * 119.88768 * 0.02734 * 15 14 13 17 17 C 1.40984 * 120.11230 * 179.72171 * 16 15 14 18 18 H 1.07994 * 119.99618 * 153.62145 * 17 16 15 19 19 C 1.39969 * 119.99728 * 333.62625 * 17 16 15 20 20 N 1.30822 * 120.00186 * 343.80649 * 19 17 16 21 21 Si 1.86800 * 119.99651 * 163.80814 * 19 17 16 22 22 H 1.48500 * 109.47281 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46890 * 119.99998 * 21 19 17 24 24 H 1.48497 * 109.47038 * 239.99762 * 21 19 17 25 25 C 1.40946 * 119.77685 * 359.97438 * 16 15 14 26 26 C 1.50703 * 120.05613 * 179.97438 * 25 16 15 27 27 C 1.36215 * 119.88831 * 359.97438 * 25 16 15 28 28 H 1.09003 * 109.47031 * 300.00016 * 1 2 3 29 29 H 1.09007 * 109.47319 * 59.99856 * 1 2 3 30 30 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.97394 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47079 * 0.02562 * 8 7 5 33 33 H 1.09003 * 109.47425 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47311 * 300.00227 * 9 8 7 35 35 H 1.09007 * 109.47298 * 60.00184 * 9 8 7 36 36 H 1.09004 * 109.47254 * 60.00331 * 10 8 7 37 37 H 1.09003 * 109.46929 * 180.02562 * 10 8 7 38 38 H 1.08993 * 109.47269 * 299.99695 * 10 8 7 39 39 H 1.08007 * 120.03391 * 179.97438 * 11 7 5 40 40 H 1.08000 * 119.94439 * 359.97438 * 14 13 12 41 41 H 1.08001 * 120.05816 * 180.02562 * 15 14 13 42 42 H 0.97005 * 120.00402 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47513 * 89.99377 * 26 25 16 44 44 H 1.08996 * 109.46684 * 210.00054 * 26 25 16 45 45 H 1.09005 * 109.46864 * 329.99779 * 26 25 16 46 46 H 1.07992 * 119.94198 * 180.02562 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.2936 2.3729 0.0048 5 6 1.9235 3.6056 -0.0005 6 9 1.1858 4.7375 -0.0014 7 6 3.3090 3.6844 -0.0053 8 6 3.9844 5.0316 -0.0117 9 6 4.8622 5.1679 1.2339 10 6 4.8530 5.1607 -1.2645 11 6 4.0696 2.5353 -0.0054 12 6 3.4451 1.2862 -0.0001 13 6 4.2561 0.0506 -0.0007 14 6 5.2877 -0.1067 -0.9348 15 6 6.0381 -1.2430 -0.9391 16 6 5.7747 -2.2624 -0.0015 17 6 6.5448 -3.4433 -0.0055 18 1 6.6618 -4.0146 0.9034 19 6 7.1577 -3.8751 -1.1875 20 7 6.7752 -3.3862 -2.3390 21 14 8.5218 -5.1495 -1.1205 22 1 8.7661 -5.5395 0.2914 23 1 8.1200 -6.3461 -1.9027 24 1 9.7641 -4.5755 -1.6970 25 6 4.7353 -2.0993 0.9364 26 6 4.4478 -3.1852 1.9410 27 6 3.9911 -0.9584 0.9332 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2151 2.3182 0.0090 32 1 3.2285 5.8169 -0.0111 33 1 5.3511 6.1421 1.2292 34 1 4.2434 5.0759 2.1265 35 1 5.6182 4.3825 1.2334 36 1 4.2276 5.0637 -2.1519 37 1 5.3419 6.1350 -1.2688 38 1 5.6089 4.3755 -1.2651 39 1 5.1477 2.6006 -0.0096 40 1 5.4885 0.6746 -1.6529 41 1 6.8337 -1.3632 -1.6595 42 1 7.2002 -3.6851 -3.1582 43 1 5.0395 -3.0141 2.8403 44 1 3.3881 -3.1733 2.1955 45 1 4.7081 -4.1536 1.5137 46 1 3.1947 -0.8323 1.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241789900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:20 Heat of formation + Delta-G solvation = -75.027178 kcal Electronic energy + Delta-G solvation = -27739.673510 eV Core-core repulsion = 23893.239833 eV Total energy + Delta-G solvation = -3846.433677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.92317 -41.24549 -39.47592 -38.86551 -36.06612 -35.36605 -33.67841 -32.20408 -30.62246 -30.05115 -28.15256 -27.97742 -27.89189 -26.40561 -24.15852 -23.80317 -22.52210 -21.23031 -20.59467 -19.40751 -19.07176 -18.01588 -17.25426 -16.89911 -16.85720 -16.69270 -16.31081 -15.70195 -15.57026 -15.49156 -15.19065 -14.84846 -14.63035 -14.27349 -14.21362 -14.17893 -13.77885 -13.56302 -13.33795 -13.32181 -13.02774 -12.99140 -12.83465 -12.76515 -12.69463 -12.39427 -12.19913 -12.16485 -12.05238 -11.73461 -11.64160 -11.57111 -11.26030 -11.15263 -11.00110 -9.92410 -9.32891 -9.18617 -8.72659 -8.55148 -6.24962 0.02942 0.31599 1.02001 1.25498 1.40187 1.52552 1.54973 2.21793 2.39319 2.54866 2.81884 3.24673 3.64803 3.67684 3.78973 3.91824 4.11029 4.27259 4.30678 4.35994 4.38100 4.45177 4.49333 4.54739 4.68274 4.73242 4.76578 4.82444 4.84081 4.92228 5.00191 5.04680 5.05594 5.08446 5.12222 5.17083 5.20159 5.28901 5.38847 5.42382 5.43926 5.53825 5.57596 5.79707 5.83526 6.06462 6.20284 6.27320 6.43552 6.50234 6.73103 6.97722 7.10104 8.34598 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.003417 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.646522 B = 8191.439228 C = 9293.474194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.138 3.862 4 C -0.236 4.236 5 C 0.109 3.891 6 F -0.139 7.139 7 C -0.140 4.140 8 C -0.050 4.050 9 C -0.141 4.141 10 C -0.142 4.142 11 C -0.055 4.055 12 C -0.055 4.055 13 C -0.175 4.175 14 C -0.090 4.090 15 C -0.189 4.189 16 C 0.089 3.911 17 C -0.483 4.483 18 H 0.082 0.918 19 C 0.035 3.965 20 N -0.823 5.823 21 Si 0.979 3.021 22 H -0.256 1.256 23 H -0.268 1.268 24 H -0.266 1.266 25 C -0.216 4.216 26 C -0.078 4.078 27 C -0.056 4.056 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.287 0.713 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.366 11.835 3.451 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.092 3.908 4 C -0.255 4.255 5 C 0.090 3.910 6 F -0.118 7.118 7 C -0.141 4.141 8 C -0.069 4.069 9 C -0.199 4.199 10 C -0.200 4.200 11 C -0.073 4.073 12 C -0.056 4.056 13 C -0.176 4.176 14 C -0.108 4.108 15 C -0.208 4.208 16 C 0.087 3.913 17 C -0.512 4.512 18 H 0.100 0.900 19 C -0.180 4.180 20 N -0.449 5.449 21 Si 0.800 3.200 22 H -0.179 1.179 23 H -0.192 1.192 24 H -0.191 1.191 25 C -0.218 4.218 26 C -0.135 4.135 27 C -0.075 4.075 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.176 0.824 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.155 0.845 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.296 11.649 3.200 14.113 hybrid contribution 0.094 -0.480 -0.415 0.642 sum -7.201 11.169 2.785 13.578 Atomic orbital electron populations 1.23369 0.76898 1.05374 1.02295 1.86231 1.22998 1.26183 1.88032 1.18926 0.91320 0.84361 0.96188 1.21102 1.01600 0.90317 1.12497 1.17266 0.88671 0.81454 1.03642 1.91437 1.76954 1.49294 1.94070 1.19861 0.91191 0.97113 1.05918 1.20031 0.97853 0.91888 0.97102 1.21847 0.99204 1.02690 0.96119 1.21856 0.99278 1.02720 0.96099 1.20832 1.00094 0.89083 0.97318 1.18460 0.89758 0.93732 1.03663 1.18069 1.01743 0.95645 1.02181 1.20590 0.95696 0.96983 0.97522 1.20896 1.02556 0.94164 1.03209 1.17883 0.90098 0.92624 0.90686 1.19827 1.27296 1.07496 0.96564 0.90018 1.26773 0.98184 0.98934 0.94115 1.69900 1.36407 1.39069 0.99486 0.85205 0.77550 0.77496 0.79781 1.17925 1.19245 1.19083 1.19845 0.99887 0.98109 1.03920 1.20363 0.99994 0.96748 0.96362 1.20298 0.97395 0.92654 0.97119 0.91200 0.91694 0.86909 0.82385 0.89931 0.90458 0.92983 0.92744 0.93135 0.90424 0.92750 0.84467 0.88174 0.88315 0.90225 0.92851 0.92454 0.93025 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.81 113.37 1.11 1.44 16 2 O -0.32 -10.93 8.85 -91.15 -0.81 -11.74 16 3 C 0.14 4.71 6.60 22.80 0.15 4.86 16 4 C -0.24 -6.69 9.01 22.38 0.20 -6.49 16 5 C 0.11 3.09 7.25 22.44 0.16 3.25 16 6 F -0.14 -3.69 16.17 44.97 0.73 -2.96 16 7 C -0.14 -3.92 4.79 -19.84 -0.10 -4.02 16 8 C -0.05 -1.12 3.07 -11.54 -0.04 -1.16 16 9 C -0.14 -2.83 9.00 71.98 0.65 -2.18 16 10 C -0.14 -2.91 9.00 71.98 0.65 -2.26 16 11 C -0.06 -1.78 8.15 22.51 0.18 -1.60 16 12 C -0.06 -2.08 5.48 -19.94 -0.11 -2.19 16 13 C -0.18 -7.83 5.30 -19.88 -0.11 -7.94 16 14 C -0.09 -4.27 9.43 22.23 0.21 -4.06 16 15 C -0.19 -10.03 8.60 22.46 0.19 -9.84 16 16 C 0.09 4.81 5.56 -21.27 -0.12 4.69 16 17 C -0.48 -25.49 8.09 23.36 0.19 -25.30 16 18 H 0.08 4.13 6.88 -2.91 -0.02 4.11 16 19 C 0.04 1.75 5.15 85.26 0.44 2.19 16 20 N -0.82 -43.01 10.97 21.83 0.24 -42.77 16 21 Si 0.98 37.76 29.59 68.60 2.03 39.79 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 24 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 25 C -0.22 -10.55 5.90 -19.67 -0.12 -10.66 16 26 C -0.08 -3.22 9.39 71.24 0.67 -2.55 16 27 C -0.06 -2.58 8.35 22.23 0.19 -2.40 16 28 H 0.07 1.27 7.65 -2.39 -0.02 1.25 16 29 H 0.06 1.24 7.67 -2.38 -0.02 1.22 16 30 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.16 3.56 6.29 -2.91 -0.02 3.55 16 32 H 0.08 1.76 7.11 -2.39 -0.02 1.74 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.16 7.38 -2.38 -0.02 1.15 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 1.18 7.37 -2.39 -0.02 1.16 16 39 H 0.14 4.28 7.05 -2.91 -0.02 4.26 16 40 H 0.10 4.34 8.03 -2.91 -0.02 4.32 16 41 H 0.10 5.48 6.23 -2.91 -0.02 5.46 16 42 H 0.29 13.56 8.30 -92.70 -0.77 12.79 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 45 H 0.05 2.19 6.77 -2.38 -0.02 2.18 16 46 H 0.10 4.26 7.69 -2.91 -0.02 4.24 16 Total: -1.00 -60.70 376.20 7.59 -53.11 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.99 Total: 30.80 kcal Atomic # 6 Polarization: -70.63 SS G_CDS: 4.41 Total: -66.22 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.24 Total: -42.77 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.81 Total: -11.74 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.73 Total: -2.96 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -60.70 7.59 -53.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241789900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.921 kcal (2) G-P(sol) polarization free energy of solvation -60.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds