Wall clock time and date at job start Tue Mar 31 2020 15:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35979 * 116.99958 * 2 1 4 4 C 1.38664 * 119.94869 * 0.24729 * 3 2 1 5 5 C 1.38018 * 120.11658 * 180.29740 * 4 3 2 6 6 C 1.50700 * 119.98221 * 179.73139 * 5 4 3 7 7 C 1.50702 * 109.46869 * 264.72367 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46983 * 120.00379 * 11 9 7 14 14 H 1.48503 * 109.47491 * 240.00192 * 11 9 7 15 15 C 1.39355 * 120.02756 * 359.45422 * 5 4 3 16 16 C 1.48350 * 120.05206 * 180.29566 * 15 5 4 17 17 C 1.39210 * 120.45833 * 244.72935 * 16 15 5 18 18 N 1.31799 * 120.68172 * 179.72406 * 17 16 15 19 19 C 1.32456 * 121.75138 * 0.53342 * 18 17 16 20 20 N 1.38972 * 119.57031 * 179.72656 * 19 18 17 21 21 C 1.39180 * 120.85423 * 359.75584 * 19 18 17 22 22 C 1.38114 * 119.22508 * 359.96945 * 21 19 18 23 23 C 1.50702 * 120.79521 * 180.02562 * 22 21 19 24 24 C 1.39365 * 119.90282 * 0.27586 * 15 5 4 25 25 C 1.38343 * 119.87373 * 359.97438 * 24 15 5 26 26 O 1.36000 * 120.01418 * 179.97438 * 25 24 15 27 27 C 1.42899 * 116.99547 * 359.97438 * 26 25 24 28 28 H 1.09006 * 109.47189 * 60.00167 * 1 2 3 29 29 H 1.09005 * 109.47154 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47141 * 300.00172 * 1 2 3 31 31 H 1.07995 * 119.94255 * 0.04912 * 4 3 2 32 32 H 1.09004 * 109.47210 * 144.72660 * 6 5 4 33 33 H 1.08994 * 109.47551 * 24.72313 * 6 5 4 34 34 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 35 35 H 1.08001 * 119.65577 * 359.97438 * 17 16 15 36 36 H 0.96996 * 119.99383 * 180.02562 * 20 19 18 37 37 H 0.96997 * 120.00138 * 0.02562 * 20 19 18 38 38 H 1.08007 * 120.38514 * 179.97438 * 21 19 18 39 39 H 1.08998 * 109.46902 * 269.97367 * 23 22 21 40 40 H 1.08993 * 109.47534 * 29.97974 * 23 22 21 41 41 H 1.09005 * 109.46604 * 149.98562 * 23 22 21 42 42 H 1.07997 * 120.06709 * 180.02562 * 24 15 5 43 43 H 1.09000 * 109.47089 * 180.02562 * 27 26 25 44 44 H 1.09007 * 109.47601 * 300.00272 * 27 26 25 45 45 H 1.08994 * 109.47431 * 60.00387 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2901 2.3738 0.0052 5 6 1.9130 3.6054 -0.0010 6 6 1.0881 4.8666 -0.0015 7 6 0.9169 5.3542 -1.4171 8 1 1.3606 4.8056 -2.2347 9 6 0.1884 6.4975 -1.6690 10 7 -0.3522 7.1654 -0.6735 11 14 -0.0303 7.0977 -3.4244 12 1 0.6706 6.1757 -4.3537 13 1 -1.4768 7.1320 -3.7591 14 1 0.5407 8.4622 -3.5558 15 6 3.3044 3.6832 -0.0010 16 6 3.9745 5.0067 -0.0010 17 6 4.7504 5.4048 -1.0861 18 7 5.3433 6.5819 -1.0931 19 6 5.2361 7.4224 -0.0750 20 7 5.8853 8.6500 -0.1280 21 6 4.4823 7.0917 1.0472 22 6 3.8401 5.8698 1.0922 23 6 3.0143 5.4758 2.2896 24 6 4.0655 2.5157 -0.0005 25 6 3.4369 1.2833 0.0004 26 8 4.1768 0.1422 0.0004 27 6 5.5980 0.2907 -0.0013 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2117 2.3153 0.0100 32 1 1.5938 5.6317 0.5877 33 1 0.1098 4.6611 0.4329 34 1 -0.8644 7.9700 -0.8507 35 1 4.8642 4.7440 -1.9327 36 1 5.8113 9.2701 0.6143 37 1 6.4123 8.8868 -0.9071 38 1 4.4004 7.7827 1.8733 39 1 3.6459 4.9597 3.0127 40 1 2.5910 6.3690 2.7490 41 1 2.2086 4.8133 1.9731 42 1 5.1439 2.5728 -0.0001 43 1 6.0662 -0.6936 -0.0017 44 1 5.9051 0.8390 -0.8920 45 1 5.9070 0.8400 0.8879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242085591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:37 Heat of formation + Delta-G solvation = -14.771850 kcal Electronic energy + Delta-G solvation = -28555.975942 eV Core-core repulsion = 24732.075093 eV Total energy + Delta-G solvation = -3823.900848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.37524 -39.54895 -38.06427 -37.03522 -34.41945 -33.36317 -32.88142 -30.79945 -30.68900 -28.19097 -27.60639 -27.29982 -26.96565 -25.78044 -23.26139 -22.75411 -21.52067 -21.00769 -20.06365 -17.90781 -17.13997 -16.63752 -16.53793 -16.28991 -16.22573 -15.69229 -15.02494 -14.94782 -14.62822 -14.57355 -14.09715 -13.99142 -13.79913 -13.59444 -13.00132 -12.83624 -12.60695 -12.38340 -12.11696 -12.03845 -11.97081 -11.55969 -11.41673 -11.16572 -11.04500 -10.88966 -10.71052 -10.59798 -10.44334 -10.34331 -10.09683 -9.54284 -9.25781 -8.99015 -8.84774 -8.37836 -8.08697 -7.45676 -6.94834 -6.02159 -4.03607 1.63457 1.85464 1.97057 2.18416 3.30013 3.38000 3.43354 3.61414 3.64596 3.86844 4.21577 4.43467 4.50541 5.04203 5.15250 5.26869 5.30027 5.32111 5.34000 5.38558 5.41038 5.45999 5.60025 5.62305 5.68819 5.74036 5.77483 5.91125 5.93207 6.00809 6.08271 6.19949 6.24347 6.43468 6.54034 6.66211 6.88960 6.95850 7.09365 7.14071 7.26458 7.41352 7.54545 7.62121 7.78322 7.80824 7.93233 8.00629 8.34572 8.70261 8.99609 9.59086 11.07276 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008919 B = 0.005694 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.475829 B = 4915.863910 C = 6883.344889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.098 3.902 4 C -0.176 4.176 5 C -0.016 4.016 6 C 0.040 3.960 7 C -0.500 4.500 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.887 3.113 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C -0.040 4.040 16 C -0.120 4.120 17 C 0.164 3.836 18 N -0.549 5.549 19 C 0.396 3.604 20 N -0.859 5.859 21 C -0.237 4.237 22 C 0.026 3.974 23 C -0.126 4.126 24 C -0.158 4.158 25 C 0.069 3.931 26 O -0.313 6.313 27 C 0.030 3.970 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.133 0.867 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.149 0.851 36 H 0.403 0.597 37 H 0.399 0.601 38 H 0.124 0.876 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.638 -6.455 5.418 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.053 3.947 4 C -0.194 4.194 5 C -0.016 4.016 6 C 0.004 3.996 7 C -0.538 4.538 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.715 3.285 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.041 4.041 16 C -0.124 4.124 17 C 0.007 3.993 18 N -0.267 5.267 19 C 0.160 3.840 20 N -0.403 5.403 21 C -0.261 4.261 22 C 0.018 3.982 23 C -0.183 4.183 24 C -0.177 4.177 25 C 0.025 3.975 26 O -0.228 6.228 27 C -0.066 4.066 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.166 0.834 36 H 0.232 0.768 37 H 0.227 0.773 38 H 0.142 0.858 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.020 -6.480 4.749 12.842 hybrid contribution -0.650 0.990 -0.459 1.270 sum 9.369 -5.490 4.290 11.676 Atomic orbital electron populations 1.22998 0.79082 1.03087 1.01603 1.86080 1.20646 1.26580 1.89465 1.18293 0.88912 0.84898 1.02628 1.20974 0.99869 0.90747 1.07844 1.20477 0.92768 0.96327 0.92068 1.18631 0.93859 0.88786 0.98366 1.20992 1.32162 1.08907 0.91732 0.92671 1.24918 0.95686 0.96573 0.96810 1.69950 1.35080 1.17692 1.30529 0.86592 0.77718 0.78817 0.85333 1.19644 1.21034 1.21088 1.18063 0.92238 0.90606 1.03164 1.19031 1.02170 0.95358 0.95851 1.22283 0.90527 0.90745 0.95705 1.67027 1.27437 1.04979 1.27279 1.18247 0.89523 0.86637 0.89562 1.42068 1.57555 1.16537 1.24171 1.20982 1.05989 0.99175 0.99994 1.19905 0.91935 0.91711 0.94643 1.21104 0.99677 1.02742 0.94740 1.20958 0.99393 0.90428 1.06924 1.17882 0.87945 0.85493 1.06198 1.86109 1.17960 1.28623 1.90067 1.22938 0.79644 1.02982 1.01022 0.92586 0.88905 0.92829 0.84918 0.93160 0.95768 0.93103 0.83356 0.76798 0.77302 0.85846 0.91575 0.91283 0.89074 0.85510 0.88944 0.93047 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.36 10.27 -34.34 -0.35 -5.71 16 3 C 0.10 1.80 6.70 -39.05 -0.26 1.54 16 4 C -0.18 -3.38 8.65 -39.50 -0.34 -3.73 16 5 C -0.02 -0.33 4.02 -104.29 -0.42 -0.75 16 6 C 0.04 0.98 3.80 -29.03 -0.11 0.87 16 7 C -0.50 -13.68 9.09 -34.44 -0.31 -14.00 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 C -0.04 -0.76 4.69 -104.90 -0.49 -1.25 16 16 C -0.12 -2.30 4.65 -104.74 -0.49 -2.78 16 17 C 0.16 3.12 10.89 -17.20 -0.19 2.93 16 18 N -0.55 -10.36 10.38 -12.16 -0.13 -10.49 16 19 C 0.40 6.81 7.74 -154.98 -1.20 5.62 16 20 N -0.86 -11.04 9.07 31.14 0.28 -10.76 16 21 C -0.24 -4.04 9.62 -39.28 -0.38 -4.42 16 22 C 0.03 0.47 4.87 -104.03 -0.51 -0.03 16 23 C -0.13 -2.10 8.66 36.01 0.31 -1.78 16 24 C -0.16 -2.69 8.72 -39.12 -0.34 -3.03 16 25 C 0.07 1.22 6.69 -39.17 -0.26 0.96 16 26 O -0.31 -5.09 10.27 -34.41 -0.35 -5.45 16 27 C 0.03 0.34 9.81 101.05 0.99 1.33 16 28 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.65 7.64 -51.93 -0.40 0.25 16 31 H 0.13 2.41 6.28 -52.49 -0.33 2.09 16 32 H 0.05 1.26 4.20 -51.93 -0.22 1.04 16 33 H 0.02 0.62 8.05 -51.93 -0.42 0.21 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.15 2.58 8.06 -52.49 -0.42 2.16 16 36 H 0.40 4.02 8.82 -40.82 -0.36 3.66 16 37 H 0.40 4.62 8.95 -40.82 -0.37 4.25 16 38 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.09 1.68 4.39 -51.93 -0.23 1.45 16 42 H 0.13 1.85 6.29 -52.49 -0.33 1.52 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.55 7.66 -51.92 -0.40 0.15 16 45 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -33.18 370.32 -8.27 -41.45 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.91 Total: 9.19 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -3.10 Total: -15.57 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.89 Total: -46.38 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.71 Total: -11.16 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.18 -8.27 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242085591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.675 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds