Wall clock time and date at job start Tue Mar 31 2020 15:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35536 * 117.00600 * 2 1 4 4 C 1.39130 * 120.47685 * 0.02562 * 3 2 1 5 5 C 1.38304 * 118.64184 * 179.97438 * 4 3 2 6 6 C 1.40122 * 119.57008 * 0.02562 * 5 4 3 7 7 C 1.48193 * 119.51874 * 179.97438 * 6 5 4 8 8 C 1.40031 * 120.47674 * 231.05932 * 7 6 5 9 9 C 1.38096 * 118.36914 * 179.74917 * 8 7 6 10 10 C 1.39066 * 119.24358 * 0.53919 * 9 8 7 11 11 O 1.35617 * 119.54327 * 179.72523 * 10 9 8 12 12 C 1.42900 * 117.00056 * 179.72744 * 11 10 9 13 13 C 1.53004 * 109.47095 * 210.00187 * 12 11 10 14 14 C 1.52993 * 109.47356 * 89.99942 * 12 11 10 15 15 N 1.32320 * 120.91136 * 359.44845 * 10 9 8 16 16 C 1.31771 * 121.78275 * 0.27533 * 15 10 9 17 17 C 1.50701 * 119.67308 * 179.97438 * 16 15 10 18 18 N 1.32194 * 120.95816 * 0.25130 * 6 5 4 19 19 C 1.33594 * 121.45595 * 359.48410 * 18 6 5 20 20 C 1.40988 * 119.83822 * 180.26405 * 19 18 6 21 21 H 1.07997 * 120.00246 * 170.37229 * 20 19 18 22 22 C 1.40020 * 119.99231 * 350.37907 * 20 19 18 23 23 N 1.30787 * 119.99592 * 164.62681 * 22 20 19 24 24 Si 1.86797 * 120.00320 * 344.61945 * 22 20 19 25 25 H 1.48503 * 109.46915 * 86.16124 * 24 22 20 26 26 H 1.48496 * 109.47314 * 206.15537 * 24 22 20 27 27 H 1.48499 * 109.47434 * 326.16220 * 24 22 20 28 28 H 1.09003 * 109.46952 * 300.00092 * 1 2 3 29 29 H 1.09001 * 109.46743 * 59.99692 * 1 2 3 30 30 H 1.08997 * 109.47639 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.67912 * 359.95126 * 4 3 2 32 32 H 1.08005 * 120.21481 * 180.02562 * 5 4 3 33 33 H 1.07993 * 120.81825 * 0.04734 * 8 7 6 34 34 H 1.07997 * 120.38081 * 180.27770 * 9 8 7 35 35 H 1.09001 * 109.46833 * 329.99455 * 12 11 10 36 36 H 1.09000 * 109.47106 * 300.00212 * 13 12 11 37 37 H 1.09003 * 109.47214 * 59.99559 * 13 12 11 38 38 H 1.08999 * 109.47357 * 179.97438 * 13 12 11 39 39 H 1.08999 * 109.47363 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.47532 * 300.00234 * 14 12 11 41 41 H 1.09005 * 109.47218 * 60.00320 * 14 12 11 42 42 H 1.08996 * 109.47433 * 93.35373 * 17 16 15 43 43 H 1.08998 * 109.46963 * 213.35620 * 17 16 15 44 44 H 1.08999 * 109.47255 * 333.35374 * 17 16 15 45 45 H 0.96999 * 119.99653 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 1.2965 2.3808 0.0005 5 6 1.9637 3.5922 0.0011 6 6 3.3648 3.6101 0.0005 7 6 4.0785 4.9088 0.0005 8 6 5.0849 5.1662 -0.9386 9 6 5.7179 6.3930 -0.9024 10 6 5.3464 7.3209 0.0645 11 8 5.9680 8.5254 0.1090 12 6 5.5394 9.4396 1.1204 13 6 5.7281 10.8745 0.6240 14 6 6.3700 9.2248 2.3871 15 7 4.3911 7.0469 0.9381 16 6 3.7583 5.8911 0.9348 17 6 2.6780 5.6291 1.9523 18 7 4.0592 2.4852 -0.0055 19 6 3.4557 1.2934 -0.0010 20 6 4.2299 0.1151 -0.0020 21 1 3.7564 -0.8423 0.1580 22 6 5.6127 0.1863 -0.2104 23 7 6.3714 -0.8383 0.0811 24 14 6.3736 1.7445 -0.9047 25 1 6.6602 2.6914 0.2028 26 1 7.6378 1.4076 -1.6073 27 1 5.4280 2.3735 -1.8615 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2171 2.3461 0.0002 32 1 1.4083 4.5186 0.0019 33 1 5.3560 4.4253 -1.6760 34 1 6.4956 6.6275 -1.6141 35 1 4.4863 9.2677 1.3428 36 1 6.7812 11.0464 0.4013 37 1 5.1364 11.0275 -0.2786 38 1 5.4009 11.5718 1.3952 39 1 6.0435 9.9224 3.1584 40 1 6.2357 8.2026 2.7408 41 1 7.4232 9.3968 2.1646 42 1 1.7091 5.8962 1.5305 43 1 2.6792 4.5724 2.2195 44 1 2.8644 6.2293 2.8429 45 1 7.3293 -0.7892 -0.0636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243651642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:46 Heat of formation + Delta-G solvation = -24.831091 kcal Electronic energy + Delta-G solvation = -27872.125761 eV Core-core repulsion = 24047.788711 eV Total energy + Delta-G solvation = -3824.337050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57736 -39.31795 -38.26731 -36.89783 -34.00475 -33.47484 -32.63533 -31.85511 -30.95612 -29.37852 -27.39232 -27.35067 -26.69065 -25.66891 -23.51772 -22.31923 -21.73509 -20.97013 -20.63381 -18.13475 -17.77061 -17.08097 -16.52676 -16.17445 -15.66462 -15.35671 -14.95467 -14.72755 -14.55938 -14.35098 -13.82601 -13.55026 -13.46540 -13.35157 -12.87050 -12.75075 -12.67686 -12.52132 -12.43259 -12.33301 -12.24555 -11.94521 -11.75233 -11.66017 -11.41877 -10.99877 -10.92974 -10.80527 -10.77038 -10.63644 -10.28653 -10.01033 -9.54915 -9.37334 -9.28654 -8.60292 -8.27491 -7.88880 -7.27883 -6.98992 -4.62882 1.28577 1.50411 2.42214 2.51176 3.09938 3.36297 3.45597 3.51997 3.97260 4.16701 4.33281 4.35617 4.43352 4.76405 4.87832 5.00770 5.10715 5.13953 5.23353 5.33526 5.40016 5.48091 5.55499 5.58981 5.64271 5.69398 5.69553 5.75729 5.78627 5.82771 5.89248 5.93410 5.95026 6.00925 6.08624 6.12604 6.31254 6.39467 6.53094 6.61604 6.70074 6.93155 7.12314 7.23456 7.43883 7.54774 7.98339 8.09086 8.16021 8.50061 8.63125 9.40703 9.93166 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.003851 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.229419 B = 7269.751134 C = 8626.487734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C -0.007 4.007 4 C -0.140 4.140 5 C -0.262 4.262 6 C 0.182 3.818 7 C -0.100 4.100 8 C -0.023 4.023 9 C -0.199 4.199 10 C 0.317 3.683 11 O -0.304 6.304 12 C 0.081 3.919 13 C -0.149 4.149 14 C -0.168 4.168 15 N -0.540 5.540 16 C 0.180 3.820 17 C -0.100 4.100 18 N -0.544 5.544 19 C 0.242 3.758 20 C -0.389 4.389 21 H 0.104 0.896 22 C 0.083 3.917 23 N -0.789 5.789 24 Si 0.989 3.011 25 H -0.270 1.270 26 H -0.327 1.327 27 H -0.265 1.265 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 14.913 1.037 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.217 6.217 3 C -0.056 4.056 4 C -0.164 4.164 5 C -0.286 4.286 6 C 0.043 3.957 7 C -0.103 4.103 8 C -0.048 4.048 9 C -0.220 4.220 10 C 0.138 3.862 11 O -0.213 6.213 12 C 0.025 3.975 13 C -0.206 4.206 14 C -0.225 4.225 15 N -0.264 5.264 16 C 0.043 3.957 17 C -0.157 4.157 18 N -0.264 5.264 19 C 0.117 3.883 20 C -0.420 4.420 21 H 0.122 0.878 22 C -0.140 4.140 23 N -0.411 5.411 24 Si 0.823 3.177 25 H -0.196 1.196 26 H -0.260 1.260 27 H -0.191 1.191 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.111 15.254 1.549 15.645 hybrid contribution -0.655 0.049 -0.718 0.973 sum -3.766 15.303 0.831 15.781 Atomic orbital electron populations 1.22817 0.81119 1.02339 1.00090 1.85982 1.18728 1.27328 1.89628 1.19966 0.92969 0.83599 1.09048 1.20930 0.98168 0.92277 1.05018 1.20808 0.93018 0.96632 1.18123 1.18908 0.89813 0.89705 0.97270 1.19338 0.98600 0.94587 0.97762 1.21655 0.91702 0.94862 0.96601 1.20921 1.05419 0.93711 1.01907 1.19706 0.89475 0.86077 0.90946 1.86256 1.58875 1.22396 1.53725 1.22273 1.00414 0.87852 0.86999 1.21897 1.02955 0.93822 1.01976 1.22206 1.00427 1.02916 0.96996 1.66967 1.10663 1.22527 1.26275 1.20901 0.94173 0.86836 0.93769 1.20805 0.95251 1.03382 0.96268 1.66932 1.36782 0.97076 1.25632 1.17972 0.86706 0.90914 0.92694 1.19449 0.91546 0.93705 1.37341 0.87772 1.26418 0.97261 0.99053 0.91310 1.69659 1.07428 1.32041 1.31985 0.84790 0.73901 0.79229 0.79738 1.19576 1.25983 1.19109 0.93927 0.93928 0.89527 0.87098 0.87559 0.84017 0.84361 0.89303 0.91789 0.91948 0.90724 0.91367 0.91845 0.92181 0.90270 0.89658 0.91184 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.83 101.05 0.99 1.49 16 2 O -0.30 -6.54 9.63 -18.30 -0.18 -6.71 16 3 C -0.01 -0.17 6.74 -38.05 -0.26 -0.42 16 4 C -0.14 -2.79 9.11 -39.23 -0.36 -3.15 16 5 C -0.26 -5.17 8.04 -38.85 -0.31 -5.48 16 6 C 0.18 3.98 5.54 -82.91 -0.46 3.52 16 7 C -0.10 -1.97 5.59 -104.74 -0.59 -2.56 16 8 C -0.02 -0.43 9.44 -38.96 -0.37 -0.79 16 9 C -0.20 -3.31 10.03 -39.33 -0.39 -3.70 16 10 C 0.32 5.26 7.46 -17.03 -0.13 5.13 16 11 O -0.30 -4.50 9.76 -18.55 -0.18 -4.68 16 12 C 0.08 0.96 3.10 -26.73 -0.08 0.88 16 13 C -0.15 -1.33 9.56 37.16 0.36 -0.97 16 14 C -0.17 -1.84 9.53 37.15 0.35 -1.48 16 15 N -0.54 -9.12 8.53 -9.25 -0.08 -9.20 16 16 C 0.18 3.18 6.78 -82.23 -0.56 2.62 16 17 C -0.10 -1.49 8.60 36.01 0.31 -1.18 16 18 N -0.54 -13.51 5.02 -7.57 -0.04 -13.55 16 19 C 0.24 6.22 6.27 -84.86 -0.53 5.69 16 20 C -0.39 -10.61 9.44 -37.87 -0.36 -10.97 16 21 H 0.10 2.95 7.56 -52.49 -0.40 2.56 16 22 C 0.08 2.23 5.51 -17.33 -0.10 2.13 16 23 N -0.79 -20.99 13.93 55.55 0.77 -20.22 16 24 Si 0.99 23.90 23.97 -169.99 -4.07 19.83 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.33 -7.65 7.11 56.52 0.40 -7.25 16 27 H -0.26 -6.38 5.86 56.52 0.33 -6.04 16 28 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 29 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.11 1.85 6.43 -52.49 -0.34 1.51 16 32 H 0.11 1.83 6.83 -52.48 -0.36 1.47 16 33 H 0.14 2.72 6.01 -52.49 -0.32 2.41 16 34 H 0.14 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.09 1.13 6.97 -51.93 -0.36 0.76 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.04 7.33 -51.93 -0.38 0.66 16 43 H 0.08 1.39 6.71 -51.93 -0.35 1.04 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.29 7.02 8.29 -40.82 -0.34 6.69 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -29.53 366.19 -7.04 -36.57 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.31 Total: 1.70 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.47 Total: -9.25 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.66 Total: -42.97 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.36 Total: -11.39 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.07 Total: 19.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.53 -7.04 -36.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243651642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.739 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds