Wall clock time and date at job start Tue Mar 31 2020 15:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35536 * 117.00600 * 2 1 4 4 C 1.39130 * 120.47685 * 0.02562 * 3 2 1 5 5 C 1.38304 * 118.64184 * 179.97438 * 4 3 2 6 6 C 1.40122 * 119.57008 * 0.02562 * 5 4 3 7 7 C 1.48193 * 119.51874 * 179.97438 * 6 5 4 8 8 C 1.40031 * 120.47674 * 231.05932 * 7 6 5 9 9 C 1.38096 * 118.36914 * 179.74917 * 8 7 6 10 10 C 1.39066 * 119.24358 * 0.53919 * 9 8 7 11 11 O 1.35617 * 119.54327 * 179.72523 * 10 9 8 12 12 C 1.42900 * 117.00056 * 179.72744 * 11 10 9 13 13 C 1.53004 * 109.47095 * 210.00187 * 12 11 10 14 14 C 1.52993 * 109.47356 * 89.99942 * 12 11 10 15 15 N 1.32320 * 120.91136 * 359.44845 * 10 9 8 16 16 C 1.31771 * 121.78275 * 0.27533 * 15 10 9 17 17 C 1.50701 * 119.67308 * 179.97438 * 16 15 10 18 18 N 1.32194 * 120.95816 * 0.25130 * 6 5 4 19 19 C 1.33594 * 121.45595 * 359.48410 * 18 6 5 20 20 C 1.40988 * 119.83822 * 180.26405 * 19 18 6 21 21 H 1.07997 * 120.00246 * 170.37229 * 20 19 18 22 22 C 1.40020 * 119.99231 * 350.37907 * 20 19 18 23 23 N 1.30787 * 119.99592 * 164.62681 * 22 20 19 24 24 Si 1.86797 * 120.00320 * 344.61945 * 22 20 19 25 25 H 1.48503 * 109.46915 * 86.16124 * 24 22 20 26 26 H 1.48496 * 109.47314 * 206.15537 * 24 22 20 27 27 H 1.48499 * 109.47434 * 326.16220 * 24 22 20 28 28 H 1.09003 * 109.46952 * 300.00092 * 1 2 3 29 29 H 1.09001 * 109.46743 * 59.99692 * 1 2 3 30 30 H 1.08997 * 109.47639 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.67912 * 359.95126 * 4 3 2 32 32 H 1.08005 * 120.21481 * 180.02562 * 5 4 3 33 33 H 1.07993 * 120.81825 * 0.04734 * 8 7 6 34 34 H 1.07997 * 120.38081 * 180.27770 * 9 8 7 35 35 H 1.09001 * 109.46833 * 329.99455 * 12 11 10 36 36 H 1.09000 * 109.47106 * 300.00212 * 13 12 11 37 37 H 1.09003 * 109.47214 * 59.99559 * 13 12 11 38 38 H 1.08999 * 109.47357 * 179.97438 * 13 12 11 39 39 H 1.08999 * 109.47363 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.47532 * 300.00234 * 14 12 11 41 41 H 1.09005 * 109.47218 * 60.00320 * 14 12 11 42 42 H 1.08996 * 109.47433 * 93.35373 * 17 16 15 43 43 H 1.08998 * 109.46963 * 213.35620 * 17 16 15 44 44 H 1.08999 * 109.47255 * 333.35374 * 17 16 15 45 45 H 0.96999 * 119.99653 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 1.2965 2.3808 0.0005 5 6 1.9637 3.5922 0.0011 6 6 3.3648 3.6101 0.0005 7 6 4.0785 4.9088 0.0005 8 6 5.0849 5.1662 -0.9386 9 6 5.7179 6.3930 -0.9024 10 6 5.3464 7.3209 0.0645 11 8 5.9680 8.5254 0.1090 12 6 5.5394 9.4396 1.1204 13 6 5.7281 10.8745 0.6240 14 6 6.3700 9.2248 2.3871 15 7 4.3911 7.0469 0.9381 16 6 3.7583 5.8911 0.9348 17 6 2.6780 5.6291 1.9523 18 7 4.0592 2.4852 -0.0055 19 6 3.4557 1.2934 -0.0010 20 6 4.2299 0.1151 -0.0020 21 1 3.7564 -0.8423 0.1580 22 6 5.6127 0.1863 -0.2104 23 7 6.3714 -0.8383 0.0811 24 14 6.3736 1.7445 -0.9047 25 1 6.6602 2.6914 0.2028 26 1 7.6378 1.4076 -1.6073 27 1 5.4280 2.3735 -1.8615 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2171 2.3461 0.0002 32 1 1.4083 4.5186 0.0019 33 1 5.3560 4.4253 -1.6760 34 1 6.4956 6.6275 -1.6141 35 1 4.4863 9.2677 1.3428 36 1 6.7812 11.0464 0.4013 37 1 5.1364 11.0275 -0.2786 38 1 5.4009 11.5718 1.3952 39 1 6.0435 9.9224 3.1584 40 1 6.2357 8.2026 2.7408 41 1 7.4232 9.3968 2.1646 42 1 1.7091 5.8962 1.5305 43 1 2.6792 4.5724 2.2195 44 1 2.8644 6.2293 2.8429 45 1 7.3293 -0.7892 -0.0636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243651642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:45 Heat of formation + Delta-G solvation = -43.481521 kcal Electronic energy + Delta-G solvation = -27872.934505 eV Core-core repulsion = 24047.788711 eV Total energy + Delta-G solvation = -3825.145793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.90462 -40.93421 -39.53445 -38.47996 -35.78435 -34.65154 -33.96697 -33.32912 -32.57146 -30.94973 -28.64732 -28.17984 -28.14432 -27.32444 -24.90167 -23.62966 -23.43009 -22.28224 -22.01711 -19.66960 -19.26483 -18.69146 -18.01400 -17.63379 -17.08880 -16.71688 -16.52301 -16.39167 -15.61613 -15.56829 -15.10114 -15.05246 -14.96126 -14.59621 -14.50787 -14.32107 -14.05338 -13.80366 -13.65243 -13.52144 -13.26211 -13.12011 -13.03123 -12.96179 -12.79991 -12.70970 -12.51878 -12.31884 -11.95444 -11.86126 -11.72701 -11.65833 -11.29013 -10.87785 -10.70121 -10.32840 -9.83673 -9.57484 -8.94077 -8.90673 -6.55871 -0.12676 0.12348 0.63884 0.84199 1.38753 1.51457 1.58315 1.97040 2.34944 2.48531 2.68526 2.75772 3.11611 3.43862 3.55684 3.77012 3.91827 4.02838 4.03893 4.08872 4.18454 4.23387 4.28790 4.43959 4.49843 4.54295 4.58148 4.67391 4.68493 4.71057 4.75495 4.77109 4.83251 4.84526 4.88431 4.98974 5.10774 5.14436 5.18652 5.23256 5.27879 5.37089 5.43089 5.54963 5.86838 6.12344 6.21794 6.25357 6.57405 6.76096 6.94608 7.59852 8.05635 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.003851 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.229419 B = 7269.751134 C = 8626.487734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.334 6.334 3 C -0.019 4.019 4 C -0.130 4.130 5 C -0.229 4.229 6 C 0.161 3.839 7 C -0.131 4.131 8 C -0.036 4.036 9 C -0.200 4.200 10 C 0.319 3.681 11 O -0.308 6.308 12 C 0.071 3.929 13 C -0.143 4.143 14 C -0.164 4.164 15 N -0.538 5.538 16 C 0.183 3.817 17 C -0.096 4.096 18 N -0.560 5.560 19 C 0.224 3.776 20 C -0.435 4.435 21 H 0.074 0.926 22 C 0.056 3.944 23 N -0.830 5.830 24 Si 1.037 2.963 25 H -0.285 1.285 26 H -0.319 1.319 27 H -0.269 1.269 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.162 0.838 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.439 18.819 1.311 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.248 6.248 3 C -0.068 4.068 4 C -0.153 4.153 5 C -0.252 4.252 6 C 0.024 3.976 7 C -0.134 4.134 8 C -0.061 4.061 9 C -0.220 4.220 10 C 0.140 3.860 11 O -0.215 6.215 12 C 0.016 3.984 13 C -0.200 4.200 14 C -0.222 4.222 15 N -0.262 5.262 16 C 0.046 3.954 17 C -0.153 4.153 18 N -0.280 5.280 19 C 0.097 3.903 20 C -0.468 4.468 21 H 0.092 0.908 22 C -0.163 4.163 23 N -0.455 5.455 24 Si 0.870 3.130 25 H -0.212 1.212 26 H -0.251 1.251 27 H -0.196 1.196 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.148 0.852 34 H 0.179 0.821 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.325 19.191 1.816 19.999 hybrid contribution -0.253 -0.855 -0.744 1.161 sum -5.578 18.336 1.072 19.195 Atomic orbital electron populations 1.23204 0.77787 1.04651 1.01617 1.85953 1.22201 1.27027 1.89596 1.20049 0.92442 0.85303 1.08959 1.21399 1.00252 0.90926 1.02761 1.21337 0.92424 0.98165 1.13249 1.19380 0.91140 0.89641 0.97484 1.19384 1.00051 0.94367 0.99574 1.21657 0.92194 0.95613 0.96657 1.21112 1.05551 0.92918 1.02423 1.19903 0.89005 0.86657 0.90411 1.86273 1.58652 1.21904 1.54715 1.22621 1.00144 0.88744 0.86929 1.21904 1.03374 0.91998 1.02740 1.22192 1.00671 1.02106 0.97209 1.67081 1.10789 1.22117 1.26254 1.21241 0.94426 0.86366 0.93412 1.20845 0.95497 1.02611 0.96385 1.66805 1.38216 0.97742 1.25264 1.18095 0.88414 0.90730 0.93038 1.19278 0.92229 0.93423 1.41852 0.90781 1.26855 0.97414 1.00595 0.91465 1.69674 1.07870 1.33223 1.34748 0.84098 0.73462 0.76787 0.78623 1.21175 1.25093 1.19604 0.92146 0.92243 0.87196 0.82790 0.83796 0.85197 0.82077 0.89961 0.91390 0.91976 0.88244 0.88842 0.94247 0.91790 0.87774 0.91289 0.89489 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.83 113.37 1.11 1.73 16 2 O -0.33 -14.31 9.63 -88.40 -0.85 -15.17 16 3 C -0.02 -0.87 6.74 23.26 0.16 -0.72 16 4 C -0.13 -4.73 9.11 22.50 0.21 -4.52 16 5 C -0.23 -8.27 8.04 22.74 0.18 -8.09 16 6 C 0.16 6.87 5.54 42.19 0.23 7.10 16 7 C -0.13 -5.01 5.59 -19.94 -0.11 -5.12 16 8 C -0.04 -1.32 9.44 22.67 0.21 -1.11 16 9 C -0.20 -6.37 10.03 22.43 0.22 -6.15 16 10 C 0.32 10.00 7.46 84.82 0.63 10.64 16 11 O -0.31 -8.40 9.76 -89.29 -0.87 -9.27 16 12 C 0.07 1.50 3.10 30.59 0.09 1.60 16 13 C -0.14 -2.07 9.56 71.98 0.69 -1.38 16 14 C -0.16 -3.19 9.53 71.98 0.69 -2.50 16 15 N -0.54 -16.98 8.53 -296.05 -2.53 -19.51 16 16 C 0.18 6.05 6.78 42.82 0.29 6.34 16 17 C -0.10 -2.56 8.60 71.24 0.61 -1.94 16 18 N -0.56 -28.24 5.02 -177.86 -0.89 -29.14 16 19 C 0.22 11.86 6.27 40.32 0.25 12.11 16 20 C -0.44 -25.29 9.44 23.38 0.22 -25.07 16 21 H 0.07 4.58 7.56 -2.91 -0.02 4.55 16 22 C 0.06 3.14 5.51 85.28 0.47 3.62 16 23 N -0.83 -47.03 13.93 21.84 0.30 -46.72 16 24 Si 1.04 51.69 23.97 68.60 1.64 53.33 16 25 H -0.28 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.32 -15.04 7.11 99.48 0.71 -14.34 16 27 H -0.27 -13.34 5.86 99.48 0.58 -12.76 16 28 H 0.06 1.46 7.69 -2.39 -0.02 1.44 16 29 H 0.06 1.45 7.69 -2.39 -0.02 1.43 16 30 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.15 4.29 6.43 -2.91 -0.02 4.27 16 32 H 0.14 4.15 6.83 -2.91 -0.02 4.13 16 33 H 0.13 5.05 6.01 -2.91 -0.02 5.04 16 34 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.08 1.86 6.97 -2.39 -0.02 1.84 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.10 2.23 7.33 -2.39 -0.02 2.21 16 43 H 0.07 2.08 6.71 -2.39 -0.02 2.06 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.30 15.21 8.29 -92.71 -0.77 14.44 16 Total: -1.00 -68.53 366.19 3.86 -64.67 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.88 Total: 15.29 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 6.17 Total: -13.48 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -3.11 Total: -95.37 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -1.72 Total: -24.44 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 1.64 Total: 53.33 kcal Total: -68.53 3.86 -64.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243651642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.187 kcal (2) G-P(sol) polarization free energy of solvation -68.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds