Wall clock time and date at job start Tue Mar 31 2020 14:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38235 * 119.85116 * 2 1 4 4 C 1.38530 * 120.06435 * 179.72030 * 3 2 1 5 5 O 1.35849 * 120.12132 * 180.27396 * 4 3 2 6 6 C 1.42900 * 117.00002 * 354.71482 * 5 4 3 7 7 C 1.52997 * 109.47234 * 83.59900 * 6 5 4 8 8 C 1.52995 * 109.47296 * 203.60046 * 6 5 4 9 9 C 1.39838 * 119.76238 * 0.57099 * 4 3 2 10 10 C 1.48331 * 120.14885 * 179.72661 * 9 4 3 11 11 C 1.39615 * 120.01915 * 244.69959 * 10 9 4 12 12 C 1.38458 * 120.41703 * 179.74020 * 11 10 9 13 13 C 1.37657 * 120.45699 * 0.56471 * 12 11 10 14 14 C 1.40754 * 120.02315 * 359.68928 * 13 12 11 15 15 C 1.41320 * 120.20775 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00065 * 206.72599 * 15 14 13 17 17 C 1.39927 * 119.99702 * 26.73345 * 15 14 13 18 18 N 1.30854 * 120.00175 * 12.77265 * 17 15 14 19 19 Si 1.86799 * 119.99960 * 192.77457 * 17 15 14 20 20 H 1.48497 * 109.47154 * 60.00019 * 19 17 15 21 21 H 1.48501 * 109.47520 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47405 * 299.99917 * 19 17 15 23 23 C 1.39088 * 120.02200 * 64.97438 * 10 9 4 24 24 F 1.35102 * 120.21823 * 359.95718 * 23 10 9 25 25 C 1.39247 * 119.70061 * 359.70206 * 9 4 3 26 26 C 1.38063 * 119.93527 * 0.02562 * 25 9 4 27 27 C 1.50701 * 119.88286 * 179.97438 * 26 25 9 28 28 H 1.08993 * 109.47525 * 269.73053 * 1 2 3 29 29 H 1.08997 * 109.46999 * 149.72436 * 1 2 3 30 30 H 1.09000 * 109.46522 * 29.72758 * 1 2 3 31 31 H 1.07996 * 119.96668 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47142 * 323.59739 * 6 5 4 33 33 H 1.09002 * 109.46861 * 300.00085 * 7 6 5 34 34 H 1.09002 * 109.47187 * 59.99866 * 7 6 5 35 35 H 1.08999 * 109.47118 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47610 * 59.99890 * 8 6 5 37 37 H 1.09000 * 109.47487 * 180.02562 * 8 6 5 38 38 H 1.08995 * 109.47425 * 299.99846 * 8 6 5 39 39 H 1.08003 * 119.78749 * 359.97438 * 11 10 9 40 40 H 1.08001 * 119.77283 * 180.25525 * 12 11 10 41 41 H 1.08005 * 119.98639 * 179.72248 * 13 12 11 42 42 H 0.97000 * 119.99873 * 180.02562 * 18 17 15 43 43 H 1.08005 * 120.03682 * 180.02562 * 25 9 4 44 44 H 1.09000 * 109.47256 * 270.02573 * 27 26 25 45 45 H 1.09005 * 109.47272 * 30.02338 * 27 26 25 46 46 H 1.09001 * 109.47212 * 150.02268 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1989 0.0000 4 6 3.5803 1.2041 0.0059 5 8 4.2577 2.3817 0.0115 6 6 3.4826 3.5765 -0.1063 7 6 2.9511 3.9774 1.2712 8 6 4.3595 4.7005 -0.6615 9 6 4.2790 -0.0072 -0.0003 10 6 5.7623 -0.0116 -0.0003 11 6 6.4593 -0.5247 -1.0958 12 6 7.8439 -0.5280 -1.1067 13 6 8.5513 -0.0363 -0.0331 14 6 7.8679 0.4807 1.0835 15 6 8.5902 0.9860 2.1880 16 1 8.1466 0.9781 3.1726 17 6 9.8802 1.4967 2.0058 18 7 10.3232 1.7397 0.7988 19 14 10.9698 1.8314 3.4857 20 1 11.1866 0.5687 4.2365 21 1 12.2772 2.3659 3.0271 22 1 10.3117 2.8264 4.3701 23 6 6.4597 0.4901 1.0936 24 9 5.7905 0.9835 2.1585 25 6 3.5760 -1.2092 -0.0061 26 6 2.1954 -1.1998 -0.0061 27 6 1.4358 -2.5014 -0.0129 28 1 -0.3634 -0.0048 1.0276 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3632 0.8924 -0.5096 31 1 1.6521 2.1325 -0.0004 32 1 2.6454 3.4013 -0.7819 33 1 2.3264 3.1766 1.6668 34 1 3.7884 4.1525 1.9469 35 1 2.3596 4.8885 1.1813 36 1 4.7382 4.4150 -1.6429 37 1 3.7684 5.6120 -0.7509 38 1 5.1967 4.8757 0.0140 39 1 5.9150 -0.9181 -1.9416 40 1 8.3725 -0.9237 -1.9614 41 1 9.6312 -0.0467 -0.0478 42 1 11.2176 2.0934 0.6725 43 1 4.1102 -2.1479 -0.0104 44 1 1.2531 -2.8101 -1.0422 45 1 2.0211 -3.2664 0.4974 46 1 0.4838 -2.3691 0.5012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245030107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:34 Heat of formation + Delta-G solvation = -62.127846 kcal Electronic energy + Delta-G solvation = -28396.921755 eV Core-core repulsion = 24551.047435 eV Total energy + Delta-G solvation = -3845.874320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -47.09151 -40.08859 -37.91597 -37.13779 -34.20173 -33.25626 -32.18369 -31.41451 -29.69513 -29.12716 -27.31221 -26.62705 -25.49531 -25.25051 -22.63858 -21.74208 -20.67581 -20.39599 -19.73380 -17.68088 -16.89865 -16.00173 -15.88562 -15.27991 -15.11105 -14.89591 -14.43531 -14.15583 -14.01955 -13.91922 -13.79158 -13.67349 -12.95321 -12.78661 -12.75975 -12.66903 -12.57624 -12.36993 -12.08881 -11.95575 -11.78643 -11.73786 -11.56042 -11.39182 -11.28705 -11.04716 -11.01498 -10.86639 -10.66578 -10.44514 -10.31997 -10.22582 -9.77366 -9.49174 -9.23044 -8.40789 -7.68751 -7.36146 -7.08614 -6.72987 -4.37207 1.59951 1.79067 2.72793 2.80919 3.07035 3.11018 3.18757 3.58091 3.93880 4.04695 4.58647 4.88662 4.95052 5.05819 5.08461 5.14514 5.23362 5.33382 5.40060 5.55084 5.59827 5.62974 5.67494 5.70261 5.73033 5.83406 5.86610 5.91776 5.92758 5.97050 6.01729 6.13744 6.29606 6.30340 6.32594 6.40966 6.61974 6.67104 6.73744 6.93305 6.94571 7.15769 7.17201 7.25753 7.55156 7.66930 7.91612 7.97135 8.04268 8.14268 8.57527 8.79402 8.88348 10.19546 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.004183 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.710605 B = 6692.733534 C = 7678.417739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.061 4.061 3 C -0.214 4.214 4 C 0.147 3.853 5 O -0.286 6.286 6 C 0.077 3.923 7 C -0.179 4.179 8 C -0.148 4.148 9 C -0.052 4.052 10 C -0.058 4.058 11 C -0.198 4.198 12 C -0.116 4.116 13 C -0.140 4.140 14 C 0.083 3.917 15 C -0.455 4.455 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C 0.010 3.990 24 F -0.157 7.157 25 C -0.068 4.068 26 C -0.133 4.133 27 C -0.105 4.105 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.281 0.719 43 H 0.127 0.873 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.994 -0.013 -2.911 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.061 4.061 3 C -0.232 4.232 4 C 0.102 3.898 5 O -0.199 6.199 6 C 0.021 3.979 7 C -0.237 4.237 8 C -0.205 4.205 9 C -0.053 4.053 10 C -0.059 4.059 11 C -0.217 4.217 12 C -0.134 4.134 13 C -0.160 4.160 14 C 0.080 3.920 15 C -0.484 4.484 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.424 5.424 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.010 4.010 24 F -0.136 7.136 25 C -0.086 4.086 26 C -0.133 4.133 27 C -0.162 4.162 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.146 0.854 42 H 0.092 0.908 43 H 0.145 0.855 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.595 0.168 -2.971 13.917 hybrid contribution 0.285 0.517 0.748 0.952 sum -13.311 0.684 -2.224 13.512 Atomic orbital electron populations 1.20777 0.91690 1.02334 1.01965 1.19414 0.95318 0.92049 0.99368 1.20966 0.92765 0.98418 1.11079 1.19009 0.89854 0.85924 0.95063 1.86338 1.34972 1.11555 1.87029 1.22358 0.94220 0.84517 0.96844 1.22384 1.02119 1.01601 0.97567 1.21816 1.00486 0.96003 1.02167 1.18231 0.93253 0.90050 1.03745 1.18051 0.89341 1.03367 0.95110 1.20215 0.93682 1.10038 0.97788 1.20634 0.93454 1.01276 0.98066 1.21280 1.00132 1.00689 0.93894 1.17553 0.88653 0.91437 0.94403 1.19426 0.98539 1.35025 0.95428 0.90262 1.25853 0.98037 0.93213 0.97056 1.69791 1.17971 1.32122 1.22493 0.86291 0.78683 0.79723 0.81610 1.18780 1.20271 1.18973 1.17826 0.89910 1.07689 0.85564 1.91274 1.80661 1.86449 1.55169 1.20913 0.92732 0.96880 0.98084 1.19481 0.93432 0.94580 1.05793 1.20689 0.99537 0.94306 1.01634 0.91439 0.91434 0.92038 0.85735 0.91620 0.92000 0.91082 0.91585 0.91674 0.91056 0.91091 0.88659 0.88717 0.85432 0.90790 0.85516 0.91869 0.91882 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.18 36.01 0.33 -0.83 16 2 C -0.06 -0.89 5.88 -104.59 -0.62 -1.50 16 3 C -0.21 -3.40 7.83 -39.47 -0.31 -3.71 16 4 C 0.15 2.86 6.38 -38.88 -0.25 2.62 16 5 O -0.29 -5.75 8.99 -19.27 -0.17 -5.92 16 6 C 0.08 1.15 2.85 -26.74 -0.08 1.08 16 7 C -0.18 -2.40 9.14 37.16 0.34 -2.06 16 8 C -0.15 -2.00 9.56 37.15 0.36 -1.65 16 9 C -0.05 -1.08 5.01 -104.77 -0.52 -1.61 16 10 C -0.06 -1.37 4.94 -104.92 -0.52 -1.89 16 11 C -0.20 -4.48 9.73 -38.99 -0.38 -4.86 16 12 C -0.12 -2.69 10.01 -39.71 -0.40 -3.09 16 13 C -0.14 -3.64 8.67 -38.84 -0.34 -3.98 16 14 C 0.08 2.27 5.57 -106.80 -0.59 1.67 16 15 C -0.45 -12.49 8.78 -37.78 -0.33 -12.82 16 16 H 0.08 2.16 7.74 -52.49 -0.41 1.76 16 17 C 0.08 1.92 5.23 -17.34 -0.09 1.83 16 18 N -0.80 -20.66 10.81 55.55 0.60 -20.06 16 19 Si 0.91 19.08 29.58 -169.99 -5.03 14.05 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 C 0.01 0.27 6.95 -38.29 -0.27 0.01 16 24 F -0.16 -4.19 16.11 2.25 0.04 -4.15 16 25 C -0.07 -1.21 9.37 -39.27 -0.37 -1.58 16 26 C -0.13 -1.99 5.88 -104.65 -0.61 -2.61 16 27 C -0.11 -1.19 9.18 36.01 0.33 -0.86 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.62 6.68 -51.93 -0.35 0.27 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.12 1.69 5.38 -52.49 -0.28 1.41 16 32 H 0.07 0.87 6.40 -51.93 -0.33 0.53 16 33 H 0.06 0.84 6.77 -51.93 -0.35 0.49 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 40 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.13 3.36 6.12 -52.48 -0.32 3.04 16 42 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 43 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 46 H 0.06 0.61 6.68 -51.93 -0.35 0.26 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -29.85 378.31 -9.77 -39.61 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.59 Total: 6.59 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: -4.32 Total: -35.83 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.60 Total: -20.06 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.17 Total: -5.92 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.04 Total: -4.15 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.85 -9.77 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245030107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.513 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds