Wall clock time and date at job start Tue Mar 31 2020 14:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38235 * 119.85116 * 2 1 4 4 C 1.38530 * 120.06435 * 179.72030 * 3 2 1 5 5 O 1.35849 * 120.12132 * 180.27396 * 4 3 2 6 6 C 1.42900 * 117.00002 * 354.71482 * 5 4 3 7 7 C 1.52997 * 109.47234 * 83.59900 * 6 5 4 8 8 C 1.52995 * 109.47296 * 203.60046 * 6 5 4 9 9 C 1.39838 * 119.76238 * 0.57099 * 4 3 2 10 10 C 1.48331 * 120.14885 * 179.72661 * 9 4 3 11 11 C 1.39615 * 120.01915 * 244.69959 * 10 9 4 12 12 C 1.38458 * 120.41703 * 179.74020 * 11 10 9 13 13 C 1.37657 * 120.45699 * 0.56471 * 12 11 10 14 14 C 1.40754 * 120.02315 * 359.68928 * 13 12 11 15 15 C 1.41320 * 120.20775 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00065 * 206.72599 * 15 14 13 17 17 C 1.39927 * 119.99702 * 26.73345 * 15 14 13 18 18 N 1.30854 * 120.00175 * 12.77265 * 17 15 14 19 19 Si 1.86799 * 119.99960 * 192.77457 * 17 15 14 20 20 H 1.48497 * 109.47154 * 60.00019 * 19 17 15 21 21 H 1.48501 * 109.47520 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47405 * 299.99917 * 19 17 15 23 23 C 1.39088 * 120.02200 * 64.97438 * 10 9 4 24 24 F 1.35102 * 120.21823 * 359.95718 * 23 10 9 25 25 C 1.39247 * 119.70061 * 359.70206 * 9 4 3 26 26 C 1.38063 * 119.93527 * 0.02562 * 25 9 4 27 27 C 1.50701 * 119.88286 * 179.97438 * 26 25 9 28 28 H 1.08993 * 109.47525 * 269.73053 * 1 2 3 29 29 H 1.08997 * 109.46999 * 149.72436 * 1 2 3 30 30 H 1.09000 * 109.46522 * 29.72758 * 1 2 3 31 31 H 1.07996 * 119.96668 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47142 * 323.59739 * 6 5 4 33 33 H 1.09002 * 109.46861 * 300.00085 * 7 6 5 34 34 H 1.09002 * 109.47187 * 59.99866 * 7 6 5 35 35 H 1.08999 * 109.47118 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47610 * 59.99890 * 8 6 5 37 37 H 1.09000 * 109.47487 * 180.02562 * 8 6 5 38 38 H 1.08995 * 109.47425 * 299.99846 * 8 6 5 39 39 H 1.08003 * 119.78749 * 359.97438 * 11 10 9 40 40 H 1.08001 * 119.77283 * 180.25525 * 12 11 10 41 41 H 1.08005 * 119.98639 * 179.72248 * 13 12 11 42 42 H 0.97000 * 119.99873 * 180.02562 * 18 17 15 43 43 H 1.08005 * 120.03682 * 180.02562 * 25 9 4 44 44 H 1.09000 * 109.47256 * 270.02573 * 27 26 25 45 45 H 1.09005 * 109.47272 * 30.02338 * 27 26 25 46 46 H 1.09001 * 109.47212 * 150.02268 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1989 0.0000 4 6 3.5803 1.2041 0.0059 5 8 4.2577 2.3817 0.0115 6 6 3.4826 3.5765 -0.1063 7 6 2.9511 3.9774 1.2712 8 6 4.3595 4.7005 -0.6615 9 6 4.2790 -0.0072 -0.0003 10 6 5.7623 -0.0116 -0.0003 11 6 6.4593 -0.5247 -1.0958 12 6 7.8439 -0.5280 -1.1067 13 6 8.5513 -0.0363 -0.0331 14 6 7.8679 0.4807 1.0835 15 6 8.5902 0.9860 2.1880 16 1 8.1466 0.9781 3.1726 17 6 9.8802 1.4967 2.0058 18 7 10.3232 1.7397 0.7988 19 14 10.9698 1.8314 3.4857 20 1 11.1866 0.5687 4.2365 21 1 12.2772 2.3659 3.0271 22 1 10.3117 2.8264 4.3701 23 6 6.4597 0.4901 1.0936 24 9 5.7905 0.9835 2.1585 25 6 3.5760 -1.2092 -0.0061 26 6 2.1954 -1.1998 -0.0061 27 6 1.4358 -2.5014 -0.0129 28 1 -0.3634 -0.0048 1.0276 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3632 0.8924 -0.5096 31 1 1.6521 2.1325 -0.0004 32 1 2.6454 3.4013 -0.7819 33 1 2.3264 3.1766 1.6668 34 1 3.7884 4.1525 1.9469 35 1 2.3596 4.8885 1.1813 36 1 4.7382 4.4150 -1.6429 37 1 3.7684 5.6120 -0.7509 38 1 5.1967 4.8757 0.0140 39 1 5.9150 -0.9181 -1.9416 40 1 8.3725 -0.9237 -1.9614 41 1 9.6312 -0.0467 -0.0478 42 1 11.2176 2.0934 0.6725 43 1 4.1102 -2.1479 -0.0104 44 1 1.2531 -2.8101 -1.0422 45 1 2.0211 -3.2664 0.4974 46 1 0.4838 -2.3691 0.5012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245030107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:33 Heat of formation + Delta-G solvation = -75.299938 kcal Electronic energy + Delta-G solvation = -28397.492940 eV Core-core repulsion = 24551.047435 eV Total energy + Delta-G solvation = -3846.445505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.13802 -41.39126 -39.30721 -38.85633 -35.92707 -34.67647 -33.50412 -32.56310 -31.57757 -30.73149 -28.43224 -27.79723 -27.21115 -26.73643 -23.82261 -23.35409 -22.57231 -21.70387 -21.18379 -19.31793 -18.44563 -17.90137 -17.34510 -17.02614 -16.56018 -16.30389 -16.17495 -15.83843 -15.48160 -15.23118 -15.05610 -14.89497 -14.64534 -14.28636 -14.07342 -13.74144 -13.62808 -13.56114 -13.52339 -13.40741 -13.20821 -13.11067 -12.92374 -12.78683 -12.75533 -12.48113 -12.39185 -12.24176 -12.15495 -12.02915 -11.78600 -11.64177 -11.37695 -11.25625 -11.12987 -9.77139 -9.38066 -9.18131 -8.69949 -8.64802 -6.43050 0.24695 0.50945 0.83622 0.95006 1.33910 1.45714 1.48199 2.17979 2.36335 2.63462 2.76743 3.50833 3.74159 3.82076 3.89125 3.95939 3.99037 4.06931 4.12249 4.24137 4.34904 4.48716 4.51993 4.62259 4.68801 4.72059 4.75594 4.79618 4.81763 4.85867 4.89824 4.91056 4.94673 5.01435 5.12929 5.17148 5.21297 5.23620 5.27281 5.32459 5.41083 5.48943 5.62928 5.73422 5.77820 5.98675 6.02859 6.05605 6.17611 6.55766 6.65808 6.78884 6.89182 8.29202 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.004183 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.710605 B = 6692.733534 C = 7678.417739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.054 4.054 3 C -0.213 4.213 4 C 0.127 3.873 5 O -0.327 6.327 6 C 0.066 3.934 7 C -0.173 4.173 8 C -0.145 4.145 9 C -0.100 4.100 10 C -0.047 4.047 11 C -0.197 4.197 12 C -0.111 4.111 13 C -0.163 4.163 14 C 0.054 3.946 15 C -0.496 4.496 16 H 0.064 0.936 17 C 0.038 3.962 18 N -0.823 5.823 19 Si 0.985 3.015 20 H -0.258 1.258 21 H -0.258 1.258 22 H -0.266 1.266 23 C -0.025 4.025 24 F -0.168 7.168 25 C -0.077 4.077 26 C -0.132 4.132 27 C -0.103 4.103 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.111 0.889 38 H 0.044 0.956 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.291 0.709 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.808 -0.185 -3.707 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.054 4.054 3 C -0.231 4.231 4 C 0.082 3.918 5 O -0.242 6.242 6 C 0.011 3.989 7 C -0.230 4.230 8 C -0.202 4.202 9 C -0.101 4.101 10 C -0.048 4.048 11 C -0.216 4.216 12 C -0.129 4.129 13 C -0.182 4.182 14 C 0.051 3.949 15 C -0.526 4.526 16 H 0.082 0.918 17 C -0.177 4.177 18 N -0.449 5.449 19 Si 0.805 3.195 20 H -0.182 1.182 21 H -0.182 1.182 22 H -0.190 1.190 23 C -0.045 4.045 24 F -0.147 7.147 25 C -0.095 4.095 26 C -0.133 4.133 27 C -0.159 4.159 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.146 0.854 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.424 -0.014 -3.788 16.855 hybrid contribution 0.979 0.550 0.893 1.434 sum -15.445 0.536 -2.895 15.724 Atomic orbital electron populations 1.20887 0.88143 1.04191 1.03381 1.19990 0.97788 0.91129 0.96541 1.21255 0.91363 1.00262 1.10210 1.19223 0.91253 0.85328 0.96036 1.86291 1.37395 1.13045 1.87432 1.22720 0.94770 0.83220 0.98201 1.22344 1.01412 1.03152 0.96072 1.21860 1.00190 0.97367 1.00778 1.18328 0.91679 0.92114 1.07929 1.18415 0.91670 1.00857 0.93845 1.20606 0.93670 1.09157 0.98215 1.20975 0.93967 0.99886 0.98047 1.21255 0.99781 1.02411 0.94777 1.17930 0.89568 0.92098 0.95274 1.19572 1.00441 1.37597 0.94980 0.91787 1.26682 0.98513 0.92211 1.00249 1.69827 1.18743 1.32079 1.24284 0.85223 0.77096 0.79624 0.77583 1.18213 1.18203 1.19028 1.18154 0.90055 1.09792 0.86548 1.91214 1.80785 1.86893 1.55854 1.21042 0.94226 0.95848 0.98368 1.19922 0.92477 0.96792 1.04067 1.20769 0.99941 0.92124 1.03112 0.90001 0.89472 0.90442 0.83363 0.89328 0.92336 0.93738 0.87840 0.92567 0.87084 0.93699 0.85850 0.85512 0.86457 0.89807 0.85397 0.90123 0.91691 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 9.18 71.24 0.65 -1.11 16 2 C -0.05 -1.41 5.88 -19.84 -0.12 -1.53 16 3 C -0.21 -6.40 7.83 22.34 0.17 -6.23 16 4 C 0.13 5.00 6.38 22.73 0.14 5.15 16 5 O -0.33 -13.66 8.99 -91.85 -0.83 -14.49 16 6 C 0.07 1.96 2.85 30.59 0.09 2.05 16 7 C -0.17 -4.51 9.14 71.98 0.66 -3.85 16 8 C -0.14 -3.93 9.56 71.98 0.69 -3.25 16 9 C -0.10 -4.25 5.01 -19.96 -0.10 -4.35 16 10 C -0.05 -2.32 4.94 -20.05 -0.10 -2.42 16 11 C -0.20 -9.08 9.73 22.65 0.22 -8.85 16 12 C -0.11 -5.23 10.01 22.18 0.22 -5.00 16 13 C -0.16 -8.86 8.67 22.75 0.20 -8.66 16 14 C 0.05 3.17 5.57 -21.27 -0.12 3.06 16 15 C -0.50 -29.14 8.78 23.44 0.21 -28.94 16 16 H 0.06 3.79 7.74 -2.91 -0.02 3.76 16 17 C 0.04 2.02 5.23 85.25 0.45 2.46 16 18 N -0.82 -44.19 10.81 21.82 0.24 -43.96 16 19 Si 0.98 40.22 29.58 68.60 2.03 42.25 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 C -0.03 -1.44 6.95 23.11 0.16 -1.27 16 24 F -0.17 -9.72 16.11 44.97 0.72 -8.99 16 25 C -0.08 -2.71 9.37 22.47 0.21 -2.50 16 26 C -0.13 -3.68 5.88 -19.88 -0.12 -3.79 16 27 C -0.10 -1.95 9.18 71.24 0.65 -1.30 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.11 6.68 -2.39 -0.02 1.09 16 30 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 31 H 0.15 3.61 5.38 -2.91 -0.02 3.60 16 32 H 0.09 2.16 6.40 -2.39 -0.02 2.15 16 33 H 0.06 1.54 6.77 -2.39 -0.02 1.53 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 40 H 0.13 5.06 8.06 -2.91 -0.02 5.03 16 41 H 0.12 6.51 6.12 -2.91 -0.02 6.50 16 42 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 43 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 1.22 8.08 -2.38 -0.02 1.20 16 46 H 0.08 1.25 6.68 -2.39 -0.02 1.24 16 Total: -1.00 -71.25 378.31 7.32 -63.93 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.99 Total: 31.59 kcal Atomic # 6 Polarization: -74.51 SS G_CDS: 4.17 Total: -70.34 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.24 Total: -43.96 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.83 Total: -14.49 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 0.72 Total: -8.99 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -71.25 7.32 -63.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245030107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.368 kcal (2) G-P(sol) polarization free energy of solvation -71.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds