Wall clock time and date at job start Tue Mar 31 2020 14:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38239 * 119.81464 * 2 1 4 4 C 1.38520 * 120.09155 * 179.77189 * 3 2 1 5 5 O 1.35775 * 120.14169 * 180.25440 * 4 3 2 6 6 C 1.42902 * 117.00105 * 355.01681 * 5 4 3 7 7 C 1.52998 * 109.47433 * 84.39531 * 6 5 4 8 8 C 1.53002 * 109.47136 * 204.39592 * 6 5 4 9 9 C 1.40191 * 119.71578 * 0.52478 * 4 3 2 10 10 C 1.47758 * 120.18011 * 179.74976 * 9 4 3 11 11 C 1.39128 * 120.32899 * 244.97688 * 10 9 4 12 12 C 1.38332 * 119.95929 * 180.02562 * 11 10 9 13 13 F 1.35100 * 119.69514 * 179.97438 * 12 11 10 14 14 C 1.39249 * 120.61751 * 359.97438 * 12 11 10 15 15 C 1.36336 * 120.66397 * 0.02562 * 14 12 11 16 16 C 1.40795 * 120.02043 * 359.71997 * 15 14 12 17 17 C 1.40792 * 120.30281 * 180.30041 * 16 15 14 18 18 H 1.08011 * 119.99906 * 206.18890 * 17 16 15 19 19 C 1.40018 * 120.00473 * 26.18958 * 17 16 15 20 20 N 1.30818 * 119.99847 * 16.01519 * 19 17 16 21 21 Si 1.86796 * 120.00575 * 196.02172 * 19 17 16 22 22 H 1.48509 * 109.47167 * 59.99600 * 21 19 17 23 23 H 1.48498 * 109.47680 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47020 * 299.99865 * 21 19 17 25 25 C 1.39604 * 119.63726 * 359.72744 * 9 4 3 26 26 C 1.37910 * 119.90436 * 0.02562 * 25 9 4 27 27 C 1.50704 * 119.86149 * 179.97438 * 26 25 9 28 28 H 1.08998 * 109.46611 * 269.72480 * 1 2 3 29 29 H 1.08994 * 109.46923 * 149.72336 * 1 2 3 30 30 H 1.08998 * 109.46935 * 29.72597 * 1 2 3 31 31 H 1.08005 * 119.95354 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.46932 * 324.39366 * 6 5 4 33 33 H 1.09010 * 109.47001 * 300.00078 * 7 6 5 34 34 H 1.08999 * 109.47197 * 59.99997 * 7 6 5 35 35 H 1.09002 * 109.47712 * 180.02562 * 7 6 5 36 36 H 1.08993 * 109.47540 * 59.99708 * 8 6 5 37 37 H 1.09004 * 109.47002 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.47025 * 299.99716 * 8 6 5 39 39 H 1.08006 * 120.01671 * 359.97438 * 11 10 9 40 40 H 1.07995 * 119.66804 * 180.02562 * 14 12 11 41 41 H 1.07997 * 119.98924 * 180.02562 * 15 14 12 42 42 H 0.96993 * 120.00618 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.04896 * 180.02562 * 25 9 4 44 44 H 1.09000 * 109.46999 * 270.01867 * 27 26 25 45 45 H 1.08996 * 109.46757 * 30.02099 * 27 26 25 46 46 H 1.09006 * 109.47012 * 150.01625 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1994 0.0000 4 6 3.5795 1.2061 0.0048 5 8 4.2556 2.3836 0.0100 6 6 3.4791 3.5781 -0.1003 7 6 2.9711 3.9859 1.2840 8 6 4.3468 4.6992 -0.6758 9 6 4.2804 -0.0080 -0.0016 10 6 5.7579 -0.0128 -0.0021 11 6 6.4584 -0.5176 -1.0931 12 6 7.8417 -0.5188 -1.0853 13 9 8.5165 -1.0108 -2.1473 14 6 8.5452 -0.0178 0.0070 15 6 7.8845 0.4829 1.0893 16 6 6.4768 0.5025 1.1082 17 6 5.7884 1.0240 2.2201 18 1 4.7893 0.6814 2.4461 19 6 6.3989 1.9867 3.0331 20 7 7.4547 2.6298 2.6053 21 14 5.7060 2.3528 4.7288 22 1 5.7345 1.1174 5.5525 23 1 6.5275 3.4025 5.3833 24 1 4.3054 2.8289 4.5989 25 6 3.5746 -1.2125 -0.0068 26 6 2.1955 -1.2013 -0.0063 27 6 1.4346 -2.5021 -0.0126 28 1 -0.3632 -0.0049 1.0277 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3633 0.8924 -0.5096 31 1 1.6506 2.1326 -0.0004 32 1 2.6304 3.4000 -0.7608 33 1 2.3528 3.1872 1.6940 34 1 3.8197 4.1640 1.9445 35 1 2.3784 4.8968 1.1999 36 1 4.7087 4.4087 -1.6620 37 1 3.7543 5.6102 -0.7604 38 1 5.1954 4.8772 -0.0153 39 1 5.9224 -0.9090 -1.9452 40 1 9.6251 -0.0258 -0.0034 41 1 8.4410 0.8692 1.9304 42 1 7.8779 3.2964 3.1685 43 1 4.1078 -2.1517 -0.0113 44 1 1.2511 -2.8107 -1.0418 45 1 2.0194 -3.2675 0.4975 46 1 0.4829 -2.3689 0.5020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245030372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:17 Heat of formation + Delta-G solvation = -61.138521 kcal Electronic energy + Delta-G solvation = -28873.820553 eV Core-core repulsion = 25027.989133 eV Total energy + Delta-G solvation = -3845.831420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -47.40170 -39.85566 -37.69078 -37.20058 -33.68583 -33.35703 -32.08749 -31.18475 -29.54828 -29.35082 -27.17906 -26.56025 -25.61062 -24.73365 -22.41085 -21.63177 -20.93000 -20.15092 -19.42068 -17.42518 -17.16069 -16.04974 -15.56565 -15.41922 -14.88196 -14.62005 -14.27242 -14.14276 -13.95151 -13.92381 -13.81683 -13.63595 -12.85010 -12.69791 -12.61315 -12.48835 -12.32687 -12.19524 -12.01918 -11.96784 -11.85163 -11.75545 -11.51583 -11.27206 -11.15852 -11.01560 -10.99449 -10.72824 -10.66132 -10.30308 -10.17598 -10.00643 -9.89875 -9.41987 -9.17315 -8.17256 -7.63502 -7.29894 -7.08891 -6.80723 -4.34606 1.85158 2.06337 2.66473 2.86756 3.00529 3.03752 3.13108 3.86446 3.87414 4.29924 4.52638 5.10380 5.15785 5.24797 5.29909 5.36036 5.44660 5.48255 5.54444 5.69091 5.75011 5.79803 5.82512 5.87333 5.89793 5.99934 6.00979 6.06795 6.09299 6.12535 6.14194 6.20846 6.33335 6.41148 6.50816 6.53587 6.73437 6.90619 6.92877 7.03135 7.12521 7.16465 7.20483 7.44143 7.46460 7.71029 7.87253 7.96833 8.18914 8.27044 8.52383 8.79223 8.88165 10.09878 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.006579 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.239396 B = 4254.875763 C = 5703.521487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.069 4.069 3 C -0.219 4.219 4 C 0.154 3.846 5 O -0.268 6.268 6 C 0.077 3.923 7 C -0.176 4.176 8 C -0.145 4.145 9 C -0.018 4.018 10 C -0.152 4.152 11 C -0.096 4.096 12 C -0.053 4.053 13 F -0.176 7.176 14 C -0.125 4.125 15 C -0.139 4.139 16 C 0.131 3.869 17 C -0.423 4.423 18 H 0.077 0.923 19 C 0.081 3.919 20 N -0.783 5.783 21 Si 0.898 3.102 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.082 4.082 26 C -0.135 4.135 27 C -0.103 4.103 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.282 0.718 43 H 0.121 0.879 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 0.673 -1.623 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.070 4.070 3 C -0.238 4.238 4 C 0.107 3.893 5 O -0.180 6.180 6 C 0.020 3.980 7 C -0.234 4.234 8 C -0.202 4.202 9 C -0.019 4.019 10 C -0.154 4.154 11 C -0.115 4.115 12 C -0.073 4.073 13 F -0.156 7.156 14 C -0.144 4.144 15 C -0.159 4.159 16 C 0.128 3.872 17 C -0.451 4.451 18 H 0.095 0.905 19 C -0.138 4.138 20 N -0.407 5.407 21 Si 0.723 3.277 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.100 4.100 26 C -0.135 4.135 27 C -0.160 4.160 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.144 0.856 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.137 0.918 -1.566 10.299 hybrid contribution -0.295 0.410 0.637 0.813 sum -10.433 1.328 -0.928 10.558 Atomic orbital electron populations 1.20745 0.92130 1.02001 1.01677 1.19343 0.94979 0.92124 1.00511 1.20945 0.93072 0.98115 1.11661 1.19123 0.89460 0.86245 0.94423 1.86428 1.33947 1.10987 1.86626 1.22282 0.94091 0.85121 0.96474 1.22349 1.02099 1.01198 0.97737 1.21786 1.00596 0.96049 1.01813 1.18013 0.92990 0.89372 1.01512 1.18097 0.89536 1.12326 0.95424 1.20468 0.91752 1.01368 0.97914 1.17124 0.89648 1.13094 0.87413 1.91272 1.80900 1.87295 1.56096 1.20448 0.98185 1.01528 0.94268 1.20910 0.94617 1.02379 0.97960 1.17488 0.91258 0.88062 0.90436 1.19340 1.01242 1.17609 1.06927 0.90484 1.25873 0.94122 0.94628 0.99216 1.69795 1.17382 1.17369 1.36161 0.86508 0.80068 0.79055 0.82097 1.18695 1.20244 1.18801 1.20965 0.92618 0.96951 0.99437 1.19399 0.93523 0.94275 1.06348 1.20666 0.99446 0.94583 1.01320 0.91737 0.91717 0.92295 0.86174 0.92071 0.92097 0.91112 0.92130 0.91997 0.91509 0.91058 0.88312 0.88452 0.85643 0.90722 0.86082 0.92189 0.92111 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.18 36.01 0.33 -0.96 16 2 C -0.07 -1.10 5.89 -104.54 -0.62 -1.72 16 3 C -0.22 -3.79 7.86 -39.48 -0.31 -4.10 16 4 C 0.15 3.14 5.87 -38.74 -0.23 2.91 16 5 O -0.27 -5.64 8.34 -19.04 -0.16 -5.80 16 6 C 0.08 1.26 2.85 -26.73 -0.08 1.19 16 7 C -0.18 -2.70 9.16 37.16 0.34 -2.36 16 8 C -0.15 -2.15 9.56 37.16 0.36 -1.79 16 9 C -0.02 -0.39 4.40 -104.76 -0.46 -0.85 16 10 C -0.15 -3.64 4.99 -104.25 -0.52 -4.16 16 11 C -0.10 -2.26 9.70 -39.22 -0.38 -2.64 16 12 C -0.05 -1.28 7.30 -39.17 -0.29 -1.57 16 13 F -0.18 -4.10 17.26 2.25 0.04 -4.06 16 14 C -0.13 -3.01 9.94 -39.89 -0.40 -3.40 16 15 C -0.14 -3.52 8.62 -39.30 -0.34 -3.86 16 16 C 0.13 3.33 5.40 -106.54 -0.58 2.75 16 17 C -0.42 -10.58 7.32 -37.95 -0.28 -10.86 16 18 H 0.08 1.95 7.11 -52.48 -0.37 1.58 16 19 C 0.08 1.92 5.16 -17.32 -0.09 1.83 16 20 N -0.78 -19.10 10.96 55.55 0.61 -18.49 16 21 Si 0.90 18.11 29.59 -169.99 -5.03 13.08 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.08 -1.54 9.39 -39.19 -0.37 -1.90 16 26 C -0.14 -2.21 5.88 -104.66 -0.61 -2.82 16 27 C -0.10 -1.30 9.18 36.01 0.33 -0.97 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.68 6.67 -51.93 -0.35 0.33 16 30 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.12 1.82 5.42 -52.48 -0.28 1.54 16 32 H 0.06 0.90 6.33 -51.93 -0.33 0.57 16 33 H 0.06 0.96 6.88 -51.92 -0.36 0.60 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.13 3.21 6.21 -52.49 -0.33 2.88 16 42 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 43 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 46 H 0.06 0.67 6.68 -51.93 -0.35 0.32 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -27.33 376.02 -9.62 -36.95 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.56 Total: 7.96 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: -4.18 Total: -35.29 kcal Atomic # 7 Polarization: -19.10 SS G_CDS: 0.61 Total: -18.49 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.16 Total: -5.80 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.04 Total: -4.06 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.33 -9.62 -36.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245030372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.190 kcal (2) G-P(sol) polarization free energy of solvation -27.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds