Wall clock time and date at job start Tue Mar 31 2020 14:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38239 * 119.81464 * 2 1 4 4 C 1.38520 * 120.09155 * 179.77189 * 3 2 1 5 5 O 1.35775 * 120.14169 * 180.25440 * 4 3 2 6 6 C 1.42902 * 117.00105 * 355.01681 * 5 4 3 7 7 C 1.52998 * 109.47433 * 84.39531 * 6 5 4 8 8 C 1.53002 * 109.47136 * 204.39592 * 6 5 4 9 9 C 1.40191 * 119.71578 * 0.52478 * 4 3 2 10 10 C 1.47758 * 120.18011 * 179.74976 * 9 4 3 11 11 C 1.39128 * 120.32899 * 244.97688 * 10 9 4 12 12 C 1.38332 * 119.95929 * 180.02562 * 11 10 9 13 13 F 1.35100 * 119.69514 * 179.97438 * 12 11 10 14 14 C 1.39249 * 120.61751 * 359.97438 * 12 11 10 15 15 C 1.36336 * 120.66397 * 0.02562 * 14 12 11 16 16 C 1.40795 * 120.02043 * 359.71997 * 15 14 12 17 17 C 1.40792 * 120.30281 * 180.30041 * 16 15 14 18 18 H 1.08011 * 119.99906 * 206.18890 * 17 16 15 19 19 C 1.40018 * 120.00473 * 26.18958 * 17 16 15 20 20 N 1.30818 * 119.99847 * 16.01519 * 19 17 16 21 21 Si 1.86796 * 120.00575 * 196.02172 * 19 17 16 22 22 H 1.48509 * 109.47167 * 59.99600 * 21 19 17 23 23 H 1.48498 * 109.47680 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47020 * 299.99865 * 21 19 17 25 25 C 1.39604 * 119.63726 * 359.72744 * 9 4 3 26 26 C 1.37910 * 119.90436 * 0.02562 * 25 9 4 27 27 C 1.50704 * 119.86149 * 179.97438 * 26 25 9 28 28 H 1.08998 * 109.46611 * 269.72480 * 1 2 3 29 29 H 1.08994 * 109.46923 * 149.72336 * 1 2 3 30 30 H 1.08998 * 109.46935 * 29.72597 * 1 2 3 31 31 H 1.08005 * 119.95354 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.46932 * 324.39366 * 6 5 4 33 33 H 1.09010 * 109.47001 * 300.00078 * 7 6 5 34 34 H 1.08999 * 109.47197 * 59.99997 * 7 6 5 35 35 H 1.09002 * 109.47712 * 180.02562 * 7 6 5 36 36 H 1.08993 * 109.47540 * 59.99708 * 8 6 5 37 37 H 1.09004 * 109.47002 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.47025 * 299.99716 * 8 6 5 39 39 H 1.08006 * 120.01671 * 359.97438 * 11 10 9 40 40 H 1.07995 * 119.66804 * 180.02562 * 14 12 11 41 41 H 1.07997 * 119.98924 * 180.02562 * 15 14 12 42 42 H 0.96993 * 120.00618 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.04896 * 180.02562 * 25 9 4 44 44 H 1.09000 * 109.46999 * 270.01867 * 27 26 25 45 45 H 1.08996 * 109.46757 * 30.02099 * 27 26 25 46 46 H 1.09006 * 109.47012 * 150.01625 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1994 0.0000 4 6 3.5795 1.2061 0.0048 5 8 4.2556 2.3836 0.0100 6 6 3.4791 3.5781 -0.1003 7 6 2.9711 3.9859 1.2840 8 6 4.3468 4.6992 -0.6758 9 6 4.2804 -0.0080 -0.0016 10 6 5.7579 -0.0128 -0.0021 11 6 6.4584 -0.5176 -1.0931 12 6 7.8417 -0.5188 -1.0853 13 9 8.5165 -1.0108 -2.1473 14 6 8.5452 -0.0178 0.0070 15 6 7.8845 0.4829 1.0893 16 6 6.4768 0.5025 1.1082 17 6 5.7884 1.0240 2.2201 18 1 4.7893 0.6814 2.4461 19 6 6.3989 1.9867 3.0331 20 7 7.4547 2.6298 2.6053 21 14 5.7060 2.3528 4.7288 22 1 5.7345 1.1174 5.5525 23 1 6.5275 3.4025 5.3833 24 1 4.3054 2.8289 4.5989 25 6 3.5746 -1.2125 -0.0068 26 6 2.1955 -1.2013 -0.0063 27 6 1.4346 -2.5021 -0.0126 28 1 -0.3632 -0.0049 1.0277 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3633 0.8924 -0.5096 31 1 1.6506 2.1326 -0.0004 32 1 2.6304 3.4000 -0.7608 33 1 2.3528 3.1872 1.6940 34 1 3.8197 4.1640 1.9445 35 1 2.3784 4.8968 1.1999 36 1 4.7087 4.4087 -1.6620 37 1 3.7543 5.6102 -0.7604 38 1 5.1954 4.8772 -0.0153 39 1 5.9224 -0.9090 -1.9452 40 1 9.6251 -0.0258 -0.0034 41 1 8.4410 0.8692 1.9304 42 1 7.8779 3.2964 3.1685 43 1 4.1078 -2.1517 -0.0113 44 1 1.2511 -2.8107 -1.0418 45 1 2.0194 -3.2675 0.4975 46 1 0.4829 -2.3689 0.5020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245030372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:16 Heat of formation + Delta-G solvation = -71.267375 kcal Electronic energy + Delta-G solvation = -28874.259773 eV Core-core repulsion = 25027.989133 eV Total energy + Delta-G solvation = -3846.270640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.29826 -41.26200 -39.27030 -38.75269 -35.49499 -34.75470 -33.46062 -32.43248 -31.30120 -31.06141 -28.41759 -27.83648 -27.06644 -26.38683 -23.71333 -23.26340 -22.75642 -21.51422 -20.92491 -19.25491 -18.67493 -17.69164 -17.22030 -16.94599 -16.43363 -16.16259 -16.04525 -15.93475 -15.54591 -15.21121 -14.98626 -14.80633 -14.55346 -14.10350 -13.98121 -13.78679 -13.77156 -13.53964 -13.50107 -13.40394 -13.11811 -12.97841 -12.84004 -12.79187 -12.67582 -12.58091 -12.29440 -12.19540 -12.05071 -11.92052 -11.73826 -11.60787 -11.24149 -11.12728 -10.99174 -9.68831 -9.35088 -9.15597 -8.69388 -8.49495 -6.24715 0.40440 0.68334 0.83517 1.04011 1.34350 1.43087 1.46395 2.17190 2.55465 2.66137 2.92360 3.62448 3.85983 3.91068 3.97435 4.06939 4.09456 4.16186 4.22886 4.28654 4.34970 4.47326 4.52465 4.68408 4.69141 4.76369 4.83019 4.86469 4.89015 4.94339 4.95348 4.99571 5.05159 5.07181 5.18304 5.21597 5.28784 5.29216 5.30424 5.41436 5.48147 5.62458 5.66685 5.78200 5.88928 5.96324 6.07681 6.17159 6.31022 6.60574 6.88400 6.91347 7.00146 8.30482 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.006579 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.239396 B = 4254.875763 C = 5703.521487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.064 4.064 3 C -0.220 4.220 4 C 0.136 3.864 5 O -0.306 6.306 6 C 0.067 3.933 7 C -0.169 4.169 8 C -0.141 4.141 9 C -0.062 4.062 10 C -0.146 4.146 11 C -0.105 4.105 12 C -0.067 4.067 13 F -0.173 7.173 14 C -0.130 4.130 15 C -0.160 4.160 16 C 0.105 3.895 17 C -0.434 4.434 18 H 0.066 0.934 19 C 0.048 3.952 20 N -0.808 5.808 21 Si 0.959 3.041 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.091 4.091 26 C -0.137 4.137 27 C -0.101 4.101 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.043 0.957 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.289 0.711 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 0.960 -1.386 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.064 4.064 3 C -0.239 4.239 4 C 0.090 3.910 5 O -0.219 6.219 6 C 0.011 3.989 7 C -0.226 4.226 8 C -0.198 4.198 9 C -0.062 4.062 10 C -0.148 4.148 11 C -0.124 4.124 12 C -0.086 4.086 13 F -0.152 7.152 14 C -0.149 4.149 15 C -0.180 4.180 16 C 0.102 3.898 17 C -0.462 4.462 18 H 0.084 0.916 19 C -0.169 4.169 20 N -0.433 5.433 21 Si 0.780 3.220 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.183 1.183 25 C -0.109 4.109 26 C -0.137 4.137 27 C -0.158 4.158 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.160 0.840 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.100 0.900 43 H 0.138 0.862 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.575 1.199 -1.344 13.694 hybrid contribution 0.684 0.315 0.488 0.897 sum -12.891 1.515 -0.856 13.008 Atomic orbital electron populations 1.20839 0.88662 1.03800 1.03057 1.19899 0.97426 0.91241 0.97853 1.21218 0.91872 0.99824 1.10940 1.19279 0.90702 0.85714 0.95325 1.86377 1.36169 1.12334 1.87009 1.22610 0.94683 0.83997 0.97585 1.22297 1.01265 1.02665 0.96420 1.21804 1.00164 0.97290 1.00514 1.18120 0.91822 0.91176 1.05113 1.18440 0.91434 1.10319 0.94594 1.20689 0.91735 1.01544 0.98445 1.17262 0.90066 1.13646 0.87667 1.91267 1.80845 1.87267 1.55825 1.20594 0.99099 1.01218 0.93988 1.20879 0.94873 1.03906 0.98325 1.17830 0.91639 0.88894 0.91404 1.19311 1.00888 1.18370 1.07627 0.91574 1.26551 0.94260 0.93940 1.02179 1.69837 1.18301 1.17723 1.37454 0.85590 0.79635 0.79074 0.77688 1.18554 1.18953 1.18345 1.21082 0.94075 0.96014 0.99754 1.19826 0.92644 0.96458 1.04768 1.20732 0.99854 0.92448 1.02726 0.90336 0.89794 0.90773 0.84031 0.89957 0.92648 0.93921 0.88423 0.92712 0.87626 0.93733 0.86964 0.86805 0.86625 0.90024 0.86217 0.90567 0.91912 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.18 71.24 0.65 -1.40 16 2 C -0.06 -1.85 5.89 -19.81 -0.12 -1.97 16 3 C -0.22 -7.24 7.86 22.34 0.18 -7.06 16 4 C 0.14 5.59 5.87 22.81 0.13 5.73 16 5 O -0.31 -13.20 8.34 -91.03 -0.76 -13.96 16 6 C 0.07 2.15 2.85 30.59 0.09 2.24 16 7 C -0.17 -4.96 9.16 71.98 0.66 -4.30 16 8 C -0.14 -4.10 9.56 71.98 0.69 -3.41 16 9 C -0.06 -2.72 4.40 -19.96 -0.09 -2.81 16 10 C -0.15 -7.31 4.99 -19.63 -0.10 -7.41 16 11 C -0.11 -5.12 9.70 22.51 0.22 -4.90 16 12 C -0.07 -3.32 7.30 22.54 0.16 -3.15 16 13 F -0.17 -8.16 17.26 44.97 0.78 -7.38 16 14 C -0.13 -6.49 9.94 22.07 0.22 -6.27 16 15 C -0.16 -8.52 8.62 22.45 0.19 -8.32 16 16 C 0.11 5.63 5.40 -21.11 -0.11 5.52 16 17 C -0.43 -22.61 7.32 23.33 0.17 -22.44 16 18 H 0.07 3.50 7.11 -2.90 -0.02 3.48 16 19 C 0.05 2.33 5.16 85.28 0.44 2.77 16 20 N -0.81 -40.82 10.96 21.84 0.24 -40.58 16 21 Si 0.96 37.48 29.59 68.60 2.03 39.51 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 25 C -0.09 -3.45 9.39 22.52 0.21 -3.23 16 26 C -0.14 -4.19 5.88 -19.89 -0.12 -4.31 16 27 C -0.10 -2.21 9.18 71.24 0.65 -1.56 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.32 6.67 -2.39 -0.02 1.30 16 30 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 31 H 0.14 3.91 5.42 -2.91 -0.02 3.89 16 32 H 0.08 2.24 6.33 -2.39 -0.02 2.23 16 33 H 0.05 1.66 6.88 -2.38 -0.02 1.64 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 40 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 41 H 0.12 6.24 6.21 -2.91 -0.02 6.23 16 42 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 43 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 46 H 0.08 1.45 6.68 -2.38 -0.02 1.44 16 Total: -1.00 -62.47 376.02 7.41 -55.06 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.99 Total: 33.66 kcal Atomic # 6 Polarization: -70.44 SS G_CDS: 4.14 Total: -66.30 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.24 Total: -40.58 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.76 Total: -13.96 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 0.78 Total: -7.38 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -62.47 7.41 -55.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245030372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.207 kcal (2) G-P(sol) polarization free energy of solvation -62.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds