Wall clock time and date at job start Tue Mar 31 2020 14:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38245 * 119.81105 * 2 1 4 4 C 1.38515 * 120.08611 * 179.72883 * 3 2 1 5 5 O 1.35784 * 120.13690 * 180.27244 * 4 3 2 6 6 C 1.42901 * 117.00337 * 354.68303 * 5 4 3 7 7 C 1.52998 * 109.47202 * 86.45093 * 6 5 4 8 8 C 1.52998 * 109.46980 * 206.45257 * 6 5 4 9 9 C 1.40182 * 119.71984 * 0.56562 * 4 3 2 10 10 C 1.47763 * 120.18340 * 179.72890 * 9 4 3 11 11 C 1.39133 * 120.26975 * 244.70346 * 10 9 4 12 12 C 1.38095 * 120.17329 * 179.76985 * 11 10 9 13 13 C 1.38844 * 120.72238 * 0.50311 * 12 11 10 14 14 C 1.37709 * 120.53183 * 359.75375 * 13 12 11 15 15 F 1.35108 * 120.09295 * 179.97438 * 14 13 12 16 16 C 1.41037 * 119.80985 * 359.97438 * 14 13 12 17 17 C 1.40765 * 120.35185 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99787 * 140.80477 * 17 16 14 19 19 C 1.40050 * 119.99897 * 320.79636 * 17 16 14 20 20 N 1.30803 * 120.00468 * 342.57813 * 19 17 16 21 21 Si 1.86803 * 119.99465 * 162.57620 * 19 17 16 22 22 H 1.48497 * 109.47083 * 90.00471 * 21 19 17 23 23 H 1.48499 * 109.46805 * 210.00221 * 21 19 17 24 24 H 1.48501 * 109.47386 * 330.00113 * 21 19 17 25 25 C 1.39601 * 119.63930 * 359.70698 * 9 4 3 26 26 C 1.37914 * 119.90276 * 0.02562 * 25 9 4 27 27 C 1.50699 * 119.86390 * 180.02562 * 26 25 9 28 28 H 1.09001 * 109.46928 * 269.72500 * 1 2 3 29 29 H 1.08997 * 109.46824 * 149.72951 * 1 2 3 30 30 H 1.09002 * 109.47203 * 29.72299 * 1 2 3 31 31 H 1.07999 * 119.95808 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.46500 * 326.44912 * 6 5 4 33 33 H 1.08996 * 109.47289 * 300.00193 * 7 6 5 34 34 H 1.09007 * 109.46842 * 60.00329 * 7 6 5 35 35 H 1.09004 * 109.46867 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47399 * 59.99612 * 8 6 5 37 37 H 1.08999 * 109.46888 * 179.97438 * 8 6 5 38 38 H 1.08994 * 109.47224 * 299.99820 * 8 6 5 39 39 H 1.08001 * 119.91280 * 359.97438 * 11 10 9 40 40 H 1.07999 * 119.64038 * 180.25559 * 12 11 10 41 41 H 1.08000 * 119.73266 * 179.76574 * 13 12 11 42 42 H 0.97000 * 120.00017 * 179.97438 * 20 19 17 43 43 H 1.07993 * 120.05279 * 180.02562 * 25 9 4 44 44 H 1.09001 * 109.47013 * 270.01841 * 27 26 25 45 45 H 1.08999 * 109.47434 * 30.01623 * 27 26 25 46 46 H 1.09000 * 109.47352 * 150.02044 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1944 1.1995 0.0000 4 6 3.5795 1.2062 0.0057 5 8 4.2555 2.3837 0.0113 6 6 3.4796 3.5779 -0.1070 7 6 3.0066 4.0182 1.2798 8 6 4.3360 4.6830 -0.7284 9 6 4.2803 -0.0079 -0.0006 10 6 5.7579 -0.0127 -0.0007 11 6 6.4575 -0.5228 -1.0898 12 6 7.8385 -0.5220 -1.0898 13 6 8.5475 -0.0244 -0.0046 14 6 7.8850 0.4827 1.0909 15 9 8.5838 0.9641 2.1422 16 6 6.4748 0.4980 1.1123 17 6 5.7859 1.0142 2.2260 18 1 4.8916 1.6025 2.0827 19 6 6.2601 0.7648 3.5200 20 7 7.1158 -0.2025 3.7279 21 14 5.6706 1.8136 4.9490 22 1 4.4557 1.2014 5.5441 23 1 6.7388 1.8942 5.9774 24 1 5.3489 3.1789 4.4614 25 6 3.5746 -1.2124 -0.0063 26 6 2.1955 -1.2013 -0.0063 27 6 1.4347 -2.5021 -0.0119 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3633 -0.8875 -0.5180 30 1 -0.3634 0.8925 -0.5095 31 1 1.6506 2.1326 -0.0004 32 1 2.6148 3.3877 -0.7426 33 1 2.3965 3.2309 1.7225 34 1 3.8716 4.2084 1.9153 35 1 2.4151 4.9294 1.1895 36 1 4.6731 4.3693 -1.7164 37 1 3.7441 5.5937 -0.8191 38 1 5.2009 4.8732 -0.0930 39 1 5.9192 -0.9175 -1.9388 40 1 8.3728 -0.9163 -1.9415 41 1 9.6274 -0.0351 -0.0200 42 1 7.4444 -0.3750 4.6241 43 1 4.1078 -2.1515 -0.0108 44 1 1.2515 -2.8114 -1.0409 45 1 2.0192 -3.2672 0.4989 46 1 0.4828 -2.3685 0.5022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245030589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:20 Heat of formation + Delta-G solvation = -54.673736 kcal Electronic energy + Delta-G solvation = -29059.850698 eV Core-core repulsion = 25214.299613 eV Total energy + Delta-G solvation = -3845.551086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.88920 -39.91275 -37.71801 -37.06472 -33.57764 -33.40160 -32.10878 -31.19998 -29.80652 -28.99698 -27.20654 -26.55338 -25.60077 -24.88050 -22.46169 -21.54128 -20.87224 -20.16183 -19.43747 -17.40700 -17.16638 -15.90271 -15.54990 -15.28902 -14.90001 -14.44421 -14.27105 -14.11299 -13.96127 -13.84349 -13.69021 -13.61985 -12.86892 -12.77197 -12.60349 -12.53889 -12.41903 -12.25498 -12.00550 -11.78641 -11.75100 -11.56459 -11.45523 -11.24406 -11.19467 -11.01825 -10.80148 -10.74111 -10.61879 -10.56528 -10.18281 -10.02419 -9.95321 -9.33423 -9.00765 -8.16523 -7.56290 -7.09325 -7.01610 -6.72188 -4.32226 1.86682 2.04842 2.72801 2.83609 3.12083 3.15273 3.20172 3.77130 4.01784 4.30105 4.66608 5.02588 5.12222 5.22436 5.24086 5.30627 5.40917 5.42664 5.56148 5.66832 5.71336 5.76136 5.81703 5.89327 5.90651 5.97516 5.98466 6.01204 6.05654 6.11483 6.16203 6.21102 6.32223 6.38262 6.44561 6.48784 6.62950 6.72268 6.91104 7.02361 7.11117 7.20704 7.25747 7.43474 7.56184 7.68285 7.81617 7.93218 8.18988 8.23822 8.54587 8.84083 8.96310 10.28008 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.005890 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.422692 B = 4752.600060 C = 5230.289527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.071 4.071 3 C -0.214 4.214 4 C 0.141 3.859 5 O -0.282 6.282 6 C 0.076 3.924 7 C -0.179 4.179 8 C -0.147 4.147 9 C -0.009 4.009 10 C -0.137 4.137 11 C -0.087 4.087 12 C -0.215 4.215 13 C -0.137 4.137 14 C 0.042 3.958 15 F -0.145 7.145 16 C 0.118 3.882 17 C -0.452 4.452 18 H 0.091 0.909 19 C 0.079 3.921 20 N -0.783 5.783 21 Si 0.900 3.100 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.076 4.076 26 C -0.131 4.131 27 C -0.104 4.104 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.281 0.719 43 H 0.122 0.878 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 2.895 -5.925 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.071 4.071 3 C -0.233 4.233 4 C 0.096 3.904 5 O -0.195 6.195 6 C 0.019 3.981 7 C -0.236 4.236 8 C -0.204 4.204 9 C -0.010 4.010 10 C -0.139 4.139 11 C -0.105 4.105 12 C -0.234 4.234 13 C -0.157 4.157 14 C 0.022 3.978 15 F -0.123 7.123 16 C 0.114 3.886 17 C -0.481 4.481 18 H 0.109 0.891 19 C -0.140 4.140 20 N -0.407 5.407 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.094 4.094 26 C -0.131 4.131 27 C -0.161 4.161 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.840 2.835 -5.663 11.702 hybrid contribution -0.149 0.541 1.067 1.206 sum -9.989 3.376 -4.596 11.503 Atomic orbital electron populations 1.20745 0.92093 1.01976 1.01719 1.19335 0.94996 0.92108 1.00707 1.20898 0.92950 0.98106 1.11335 1.19075 0.89630 0.85930 0.95786 1.86334 1.34653 1.11382 1.87130 1.22316 0.94347 0.84846 0.96602 1.22366 1.02379 1.01352 0.97537 1.21816 1.00670 0.96401 1.01507 1.17997 0.92986 0.89348 1.00685 1.18278 0.89639 1.08465 0.97482 1.20573 0.93661 0.99780 0.96496 1.20016 0.93522 1.10942 0.98914 1.20615 0.98210 1.02262 0.94564 1.17789 0.90011 1.05244 0.84749 1.91325 1.78603 1.85942 1.56469 1.17387 0.89314 0.89534 0.92350 1.19353 1.10684 1.28677 0.89345 0.89094 1.25812 0.93644 0.94119 1.00420 1.69738 1.23693 1.23292 1.23963 0.86433 0.78992 0.81599 0.80541 1.19650 1.20146 1.18413 1.20933 0.92549 0.96981 0.98916 1.19422 0.93542 0.94308 1.05810 1.20675 0.99494 0.94615 1.01311 0.91716 0.91698 0.92315 0.86187 0.91691 0.91956 0.91072 0.91878 0.91892 0.91315 0.91240 0.88778 0.88504 0.88354 0.90821 0.85965 0.92148 0.92011 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.18 36.01 0.33 -0.97 16 2 C -0.07 -1.14 5.89 -104.53 -0.62 -1.75 16 3 C -0.21 -3.66 7.96 -39.48 -0.31 -3.98 16 4 C 0.14 2.85 5.52 -38.75 -0.21 2.63 16 5 O -0.28 -5.68 7.71 -19.06 -0.15 -5.82 16 6 C 0.08 1.15 2.84 -26.73 -0.08 1.08 16 7 C -0.18 -2.58 9.21 37.16 0.34 -2.24 16 8 C -0.15 -1.94 9.56 37.16 0.36 -1.59 16 9 C -0.01 -0.21 4.71 -104.77 -0.49 -0.70 16 10 C -0.14 -3.30 4.99 -104.27 -0.52 -3.82 16 11 C -0.09 -1.93 9.71 -39.30 -0.38 -2.31 16 12 C -0.21 -4.71 10.02 -39.41 -0.40 -5.11 16 13 C -0.14 -3.26 9.99 -39.55 -0.40 -3.66 16 14 C 0.04 1.13 6.66 -38.71 -0.26 0.88 16 15 F -0.14 -4.02 14.43 2.25 0.03 -3.99 16 16 C 0.12 3.14 5.20 -106.48 -0.55 2.58 16 17 C -0.45 -12.12 7.84 -37.95 -0.30 -12.42 16 18 H 0.09 2.40 5.57 -52.49 -0.29 2.11 16 19 C 0.08 2.09 4.58 -17.31 -0.08 2.01 16 20 N -0.78 -21.32 11.18 55.55 0.62 -20.70 16 21 Si 0.90 19.88 29.59 -169.99 -5.03 14.85 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 25 C -0.08 -1.47 9.38 -39.19 -0.37 -1.83 16 26 C -0.13 -2.17 5.88 -104.66 -0.61 -2.79 16 27 C -0.10 -1.35 9.18 36.00 0.33 -1.02 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.68 6.68 -51.93 -0.35 0.34 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.12 1.77 5.49 -52.49 -0.29 1.48 16 32 H 0.07 0.89 6.21 -51.93 -0.32 0.56 16 33 H 0.06 0.94 7.10 -51.93 -0.37 0.57 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 43 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 46 H 0.06 0.69 6.67 -51.93 -0.35 0.35 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -29.68 373.92 -9.70 -39.38 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.59 Total: 5.65 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: -4.22 Total: -35.00 kcal Atomic # 7 Polarization: -21.32 SS G_CDS: 0.62 Total: -20.70 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.15 Total: -5.82 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.03 Total: -3.99 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.68 -9.70 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245030589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.295 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds