Wall clock time and date at job start Tue Mar 31 2020 14:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38245 * 119.81105 * 2 1 4 4 C 1.38515 * 120.08611 * 179.72883 * 3 2 1 5 5 O 1.35784 * 120.13690 * 180.27244 * 4 3 2 6 6 C 1.42901 * 117.00337 * 354.68303 * 5 4 3 7 7 C 1.52998 * 109.47202 * 86.45093 * 6 5 4 8 8 C 1.52998 * 109.46980 * 206.45257 * 6 5 4 9 9 C 1.40182 * 119.71984 * 0.56562 * 4 3 2 10 10 C 1.47763 * 120.18340 * 179.72890 * 9 4 3 11 11 C 1.39133 * 120.26975 * 244.70346 * 10 9 4 12 12 C 1.38095 * 120.17329 * 179.76985 * 11 10 9 13 13 C 1.38844 * 120.72238 * 0.50311 * 12 11 10 14 14 C 1.37709 * 120.53183 * 359.75375 * 13 12 11 15 15 F 1.35108 * 120.09295 * 179.97438 * 14 13 12 16 16 C 1.41037 * 119.80985 * 359.97438 * 14 13 12 17 17 C 1.40765 * 120.35185 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99787 * 140.80477 * 17 16 14 19 19 C 1.40050 * 119.99897 * 320.79636 * 17 16 14 20 20 N 1.30803 * 120.00468 * 342.57813 * 19 17 16 21 21 Si 1.86803 * 119.99465 * 162.57620 * 19 17 16 22 22 H 1.48497 * 109.47083 * 90.00471 * 21 19 17 23 23 H 1.48499 * 109.46805 * 210.00221 * 21 19 17 24 24 H 1.48501 * 109.47386 * 330.00113 * 21 19 17 25 25 C 1.39601 * 119.63930 * 359.70698 * 9 4 3 26 26 C 1.37914 * 119.90276 * 0.02562 * 25 9 4 27 27 C 1.50699 * 119.86390 * 180.02562 * 26 25 9 28 28 H 1.09001 * 109.46928 * 269.72500 * 1 2 3 29 29 H 1.08997 * 109.46824 * 149.72951 * 1 2 3 30 30 H 1.09002 * 109.47203 * 29.72299 * 1 2 3 31 31 H 1.07999 * 119.95808 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.46500 * 326.44912 * 6 5 4 33 33 H 1.08996 * 109.47289 * 300.00193 * 7 6 5 34 34 H 1.09007 * 109.46842 * 60.00329 * 7 6 5 35 35 H 1.09004 * 109.46867 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47399 * 59.99612 * 8 6 5 37 37 H 1.08999 * 109.46888 * 179.97438 * 8 6 5 38 38 H 1.08994 * 109.47224 * 299.99820 * 8 6 5 39 39 H 1.08001 * 119.91280 * 359.97438 * 11 10 9 40 40 H 1.07999 * 119.64038 * 180.25559 * 12 11 10 41 41 H 1.08000 * 119.73266 * 179.76574 * 13 12 11 42 42 H 0.97000 * 120.00017 * 179.97438 * 20 19 17 43 43 H 1.07993 * 120.05279 * 180.02562 * 25 9 4 44 44 H 1.09001 * 109.47013 * 270.01841 * 27 26 25 45 45 H 1.08999 * 109.47434 * 30.01623 * 27 26 25 46 46 H 1.09000 * 109.47352 * 150.02044 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1944 1.1995 0.0000 4 6 3.5795 1.2062 0.0057 5 8 4.2555 2.3837 0.0113 6 6 3.4796 3.5779 -0.1070 7 6 3.0066 4.0182 1.2798 8 6 4.3360 4.6830 -0.7284 9 6 4.2803 -0.0079 -0.0006 10 6 5.7579 -0.0127 -0.0007 11 6 6.4575 -0.5228 -1.0898 12 6 7.8385 -0.5220 -1.0898 13 6 8.5475 -0.0244 -0.0046 14 6 7.8850 0.4827 1.0909 15 9 8.5838 0.9641 2.1422 16 6 6.4748 0.4980 1.1123 17 6 5.7859 1.0142 2.2260 18 1 4.8916 1.6025 2.0827 19 6 6.2601 0.7648 3.5200 20 7 7.1158 -0.2025 3.7279 21 14 5.6706 1.8136 4.9490 22 1 4.4557 1.2014 5.5441 23 1 6.7388 1.8942 5.9774 24 1 5.3489 3.1789 4.4614 25 6 3.5746 -1.2124 -0.0063 26 6 2.1955 -1.2013 -0.0063 27 6 1.4347 -2.5021 -0.0119 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3633 -0.8875 -0.5180 30 1 -0.3634 0.8925 -0.5095 31 1 1.6506 2.1326 -0.0004 32 1 2.6148 3.3877 -0.7426 33 1 2.3965 3.2309 1.7225 34 1 3.8716 4.2084 1.9153 35 1 2.4151 4.9294 1.1895 36 1 4.6731 4.3693 -1.7164 37 1 3.7441 5.5937 -0.8191 38 1 5.2009 4.8732 -0.0930 39 1 5.9192 -0.9175 -1.9388 40 1 8.3728 -0.9163 -1.9415 41 1 9.6274 -0.0351 -0.0200 42 1 7.4444 -0.3750 4.6241 43 1 4.1078 -2.1515 -0.0108 44 1 1.2515 -2.8114 -1.0409 45 1 2.0192 -3.2672 0.4989 46 1 0.4828 -2.3685 0.5022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245030589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:19 Heat of formation + Delta-G solvation = -67.484962 kcal Electronic energy + Delta-G solvation = -29060.406235 eV Core-core repulsion = 25214.299613 eV Total energy + Delta-G solvation = -3846.106622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.94246 -41.29531 -39.17746 -38.69267 -35.46107 -34.74555 -33.44138 -32.44416 -31.59571 -30.65470 -28.38456 -27.82003 -27.13313 -26.49235 -23.73090 -23.12850 -22.73348 -21.49231 -20.93634 -19.27238 -18.62894 -17.50156 -17.21816 -16.88874 -16.41843 -16.14082 -15.99286 -15.71776 -15.62194 -15.24868 -15.01792 -14.81415 -14.58649 -14.20345 -13.95565 -13.66190 -13.55484 -13.50644 -13.44199 -13.27834 -13.08928 -13.00784 -12.95671 -12.74633 -12.70665 -12.46503 -12.38550 -12.21577 -12.09869 -11.97111 -11.83715 -11.51853 -11.24099 -11.08827 -10.92864 -9.64864 -9.20235 -9.01686 -8.65006 -8.51398 -6.30481 0.40369 0.66322 0.93060 0.97734 1.28777 1.39290 1.43163 2.18540 2.51017 2.73985 2.92162 3.50302 3.87560 3.94328 4.01858 4.07269 4.10166 4.20079 4.24630 4.33414 4.40487 4.48243 4.57150 4.68805 4.70710 4.76836 4.82548 4.85767 4.87740 4.88848 4.94450 4.95483 5.00529 5.06640 5.21157 5.21583 5.27605 5.29824 5.33839 5.39537 5.52690 5.63120 5.71766 5.78651 5.87467 5.98500 6.08602 6.16608 6.35345 6.56955 6.83754 6.91296 7.02921 8.38229 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.005890 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.422692 B = 4752.600060 C = 5230.289527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.066 4.066 3 C -0.215 4.215 4 C 0.128 3.872 5 O -0.316 6.316 6 C 0.065 3.935 7 C -0.174 4.174 8 C -0.143 4.143 9 C -0.055 4.055 10 C -0.130 4.130 11 C -0.098 4.098 12 C -0.200 4.200 13 C -0.146 4.146 14 C 0.000 4.000 15 F -0.161 7.161 16 C 0.087 3.913 17 C -0.474 4.474 18 H 0.085 0.915 19 C 0.037 3.963 20 N -0.824 5.824 21 Si 0.958 3.042 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.258 1.258 25 C -0.089 4.089 26 C -0.135 4.135 27 C -0.102 4.102 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.118 0.882 42 H 0.283 0.717 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 3.155 -7.314 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.066 4.066 3 C -0.234 4.234 4 C 0.082 3.918 5 O -0.230 6.230 6 C 0.010 3.990 7 C -0.231 4.231 8 C -0.200 4.200 9 C -0.056 4.056 10 C -0.132 4.132 11 C -0.116 4.116 12 C -0.219 4.219 13 C -0.165 4.165 14 C -0.020 4.020 15 F -0.140 7.140 16 C 0.084 3.916 17 C -0.503 4.503 18 H 0.103 0.897 19 C -0.178 4.178 20 N -0.450 5.450 21 Si 0.780 3.220 22 H -0.186 1.186 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.108 4.108 26 C -0.135 4.135 27 C -0.158 4.158 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.162 0.838 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.993 3.096 -7.068 15.111 hybrid contribution 0.753 0.415 1.278 1.540 sum -12.240 3.511 -5.790 13.988 Atomic orbital electron populations 1.20839 0.88624 1.03908 1.02965 1.19894 0.97451 0.91239 0.98042 1.21203 0.91832 0.99817 1.10524 1.19211 0.90803 0.85523 0.96258 1.86296 1.36742 1.12605 1.87317 1.22676 0.95076 0.83751 0.97543 1.22337 1.01569 1.02696 0.96490 1.21846 1.00318 0.97303 1.00528 1.18129 0.91973 0.91178 1.04308 1.18728 0.91537 1.06249 0.96666 1.20982 0.94157 0.99569 0.96908 1.20497 0.93678 1.08667 0.99082 1.20924 0.99424 1.01974 0.94197 1.18258 0.90639 1.07556 0.85547 1.91260 1.78868 1.86423 1.57420 1.17751 0.89700 0.90612 0.93548 1.19417 1.11032 1.29772 0.90127 0.89711 1.26557 0.93769 0.94848 1.02632 1.69806 1.25731 1.24981 1.24468 0.85552 0.78862 0.80004 0.77609 1.18575 1.19550 1.18184 1.21024 0.94069 0.96004 0.99662 1.19836 0.92638 0.96524 1.04492 1.20735 0.99772 0.92454 1.02852 0.90582 0.89762 0.90541 0.83796 0.89618 0.92871 0.93714 0.88145 0.92250 0.87615 0.93327 0.86081 0.84672 0.86440 0.90706 0.86535 0.90186 0.92257 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 9.18 71.24 0.65 -1.42 16 2 C -0.07 -1.93 5.89 -19.81 -0.12 -2.05 16 3 C -0.22 -7.00 7.96 22.34 0.18 -6.82 16 4 C 0.13 5.17 5.52 22.81 0.13 5.29 16 5 O -0.32 -13.00 7.71 -91.13 -0.70 -13.70 16 6 C 0.07 1.94 2.84 30.59 0.09 2.02 16 7 C -0.17 -4.83 9.21 71.98 0.66 -4.17 16 8 C -0.14 -3.67 9.56 71.98 0.69 -2.98 16 9 C -0.06 -2.45 4.71 -19.96 -0.09 -2.55 16 10 C -0.13 -6.48 4.99 -19.64 -0.10 -6.58 16 11 C -0.10 -4.35 9.71 22.45 0.22 -4.13 16 12 C -0.20 -8.63 10.02 22.38 0.22 -8.41 16 13 C -0.15 -7.07 9.99 22.29 0.22 -6.84 16 14 C 0.00 0.01 6.66 22.83 0.15 0.16 16 15 F -0.16 -9.46 14.43 44.97 0.65 -8.81 16 16 C 0.09 4.87 5.20 -21.07 -0.11 4.76 16 17 C -0.47 -26.79 7.84 23.33 0.18 -26.61 16 18 H 0.08 4.74 5.57 -2.91 -0.02 4.72 16 19 C 0.04 2.02 4.58 85.29 0.39 2.41 16 20 N -0.82 -47.23 11.18 21.85 0.24 -46.99 16 21 Si 0.96 42.33 29.59 68.60 2.03 44.36 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 25 C -0.09 -3.48 9.38 22.52 0.21 -3.27 16 26 C -0.13 -4.25 5.88 -19.89 -0.12 -4.36 16 27 C -0.10 -2.33 9.18 71.24 0.65 -1.68 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.34 6.68 -2.39 -0.02 1.32 16 30 H 0.08 1.24 8.08 -2.39 -0.02 1.23 16 31 H 0.14 3.84 5.49 -2.91 -0.02 3.82 16 32 H 0.09 2.14 6.21 -2.39 -0.01 2.13 16 33 H 0.05 1.55 7.10 -2.39 -0.02 1.53 16 34 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.14 4.74 8.06 -2.91 -0.02 4.71 16 41 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 42 H 0.28 14.99 8.30 -92.71 -0.77 14.22 16 43 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.39 8.08 -2.39 -0.02 1.37 16 46 H 0.08 1.53 6.67 -2.39 -0.02 1.52 16 Total: -1.00 -69.44 373.92 7.32 -62.12 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.99 Total: 30.24 kcal Atomic # 6 Polarization: -71.33 SS G_CDS: 4.12 Total: -67.21 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.24 Total: -46.99 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.70 Total: -13.70 kcal Atomic # 9 Polarization: -9.46 SS G_CDS: 0.65 Total: -8.81 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.44 7.32 -62.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245030589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.367 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds