Wall clock time and date at job start Tue Mar 31 2020 14:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38223 * 119.84848 * 2 1 4 4 C 1.38554 * 120.05607 * 179.76775 * 3 2 1 5 5 O 1.35846 * 120.11426 * 180.27240 * 4 3 2 6 6 C 1.42900 * 116.99766 * 5.28985 * 5 4 3 7 7 C 1.53002 * 109.46994 * 156.37105 * 6 5 4 8 8 C 1.53002 * 109.47094 * 276.36797 * 6 5 4 9 9 C 1.39824 * 119.76808 * 0.49933 * 4 3 2 10 10 C 1.48348 * 120.15407 * 179.72820 * 9 4 3 11 11 C 1.39724 * 119.98564 * 309.75509 * 10 9 4 12 12 C 1.38621 * 120.34620 * 179.72266 * 11 10 9 13 13 F 1.35098 * 119.83449 * 180.27385 * 12 11 10 14 14 C 1.37940 * 120.32606 * 0.54662 * 12 11 10 15 15 C 1.40717 * 119.97718 * 359.72566 * 14 12 11 16 16 C 1.41424 * 120.17403 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99803 * 153.48890 * 16 15 14 18 18 C 1.39915 * 120.00435 * 333.49158 * 16 15 14 19 19 N 1.30841 * 119.99786 * 347.09580 * 18 16 15 20 20 Si 1.86800 * 120.00639 * 167.09061 * 18 16 15 21 21 H 1.48507 * 109.46513 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47024 * 119.99996 * 20 18 16 23 23 H 1.48504 * 109.47342 * 240.00615 * 20 18 16 24 24 C 1.38758 * 119.99369 * 130.02210 * 10 9 4 25 25 C 1.39255 * 119.69853 * 359.75117 * 9 4 3 26 26 C 1.38049 * 119.93629 * 0.02562 * 25 9 4 27 27 C 1.50702 * 119.88356 * 179.97438 * 26 25 9 28 28 H 1.08999 * 109.47462 * 269.72932 * 1 2 3 29 29 H 1.09000 * 109.47282 * 149.72363 * 1 2 3 30 30 H 1.09002 * 109.47140 * 29.72888 * 1 2 3 31 31 H 1.07987 * 119.97213 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.47531 * 36.37224 * 6 5 4 33 33 H 1.09012 * 109.47038 * 59.99835 * 7 6 5 34 34 H 1.09000 * 109.47344 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47395 * 299.99993 * 7 6 5 36 36 H 1.09001 * 109.46876 * 300.00648 * 8 6 5 37 37 H 1.08997 * 109.46996 * 60.00429 * 8 6 5 38 38 H 1.08994 * 109.47467 * 180.02562 * 8 6 5 39 39 H 1.08003 * 119.82815 * 359.97438 * 11 10 9 40 40 H 1.08001 * 120.01030 * 179.75089 * 14 12 11 41 41 H 0.96998 * 119.99998 * 180.02562 * 19 18 16 42 42 H 1.08008 * 120.15848 * 0.02562 * 24 10 9 43 43 H 1.07999 * 120.03449 * 180.02562 * 25 9 4 44 44 H 1.08996 * 109.47081 * 270.01693 * 27 26 25 45 45 H 1.09000 * 109.47266 * 30.02202 * 27 26 25 46 46 H 1.08997 * 109.46981 * 150.01598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1989 0.0000 4 6 3.5804 1.2039 0.0049 5 8 4.2577 2.3815 0.0105 6 6 3.4817 3.5756 0.1284 7 6 4.3541 4.6967 0.6968 8 6 2.9614 3.9840 -1.2512 9 6 4.2791 -0.0073 -0.0008 10 6 5.7625 -0.0119 -0.0018 11 6 6.4627 0.7639 -0.9293 12 6 7.8489 0.7697 -0.9331 13 9 8.5153 1.5280 -1.8309 14 6 8.5511 0.0008 -0.0285 15 6 7.8598 -0.7901 0.9080 16 6 8.5756 -1.5796 1.8377 17 1 8.1280 -1.8349 2.7869 18 6 9.8636 -2.0300 1.5280 19 7 10.3094 -1.9434 0.3009 20 14 10.9467 -2.7548 2.8662 21 1 10.2139 -2.7406 4.1578 22 1 11.3004 -4.1532 2.5135 23 1 12.1866 -1.9470 2.9912 24 6 6.4544 -0.7908 0.9147 25 6 3.5760 -1.2093 -0.0061 26 6 2.1955 -1.1999 -0.0062 27 6 1.4358 -2.5015 -0.0124 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3634 -0.8875 -0.5181 30 1 -0.3633 0.8924 -0.5096 31 1 1.6521 2.1324 0.0004 32 1 2.6391 3.3969 0.7962 33 1 5.1969 4.8754 0.0289 34 1 3.7624 5.6077 0.7864 35 1 4.7248 4.4057 1.6796 36 1 3.8041 4.1627 -1.9191 37 1 2.3399 3.1854 -1.6562 38 1 2.3699 4.8951 -1.1614 39 1 5.9210 1.3654 -1.6443 40 1 9.6310 0.0060 -0.0386 41 1 11.2022 -2.2559 0.0861 42 1 5.9154 -1.3950 1.6296 43 1 4.1101 -2.1479 -0.0100 44 1 1.2531 -2.8105 -1.0416 45 1 2.0211 -3.2662 0.4982 46 1 0.4839 -2.3690 0.5017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245032701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:44 Heat of formation + Delta-G solvation = -66.367083 kcal Electronic energy + Delta-G solvation = -27790.118863 eV Core-core repulsion = 23944.060716 eV Total energy + Delta-G solvation = -3846.058147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.56774 -40.22780 -38.01627 -37.22954 -34.24235 -33.24835 -32.20654 -31.46849 -29.74165 -29.10413 -27.42589 -26.64965 -25.73699 -25.27178 -22.72876 -21.84171 -20.77760 -20.35402 -19.82030 -17.83944 -17.00783 -16.04870 -15.72349 -15.32040 -15.02387 -14.65999 -14.52581 -14.41107 -14.24999 -14.22062 -14.00953 -13.88842 -13.12000 -12.92905 -12.80365 -12.70198 -12.66575 -12.47372 -12.23921 -12.07104 -11.92186 -11.78469 -11.63404 -11.38239 -11.27824 -11.10758 -11.00884 -10.95500 -10.61491 -10.50028 -10.34582 -10.24301 -9.94504 -9.58220 -9.25864 -8.50137 -7.80881 -7.39479 -7.04036 -6.75432 -4.45929 1.49817 1.72078 2.69944 2.83212 3.06729 3.11909 3.14126 3.45778 3.90740 4.01990 4.55419 4.77493 4.86498 4.95730 5.01022 5.07025 5.13964 5.27643 5.37633 5.48843 5.56065 5.56958 5.57423 5.62983 5.69744 5.72780 5.76461 5.79003 5.81934 5.98270 6.00560 6.08790 6.13732 6.19405 6.34144 6.44176 6.57771 6.65428 6.69064 6.86631 6.95139 7.03441 7.17966 7.21975 7.50308 7.72797 7.78751 7.85609 7.94294 8.21017 8.54629 8.81611 8.83596 10.16752 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.003889 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.008856 B = 7198.758634 C = 8701.422807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.063 4.063 3 C -0.212 4.212 4 C 0.137 3.863 5 O -0.290 6.290 6 C 0.075 3.925 7 C -0.148 4.148 8 C -0.180 4.180 9 C -0.051 4.051 10 C -0.005 4.005 11 C -0.235 4.235 12 C 0.099 3.901 13 F -0.168 7.168 14 C -0.192 4.192 15 C 0.125 3.875 16 C -0.458 4.458 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.795 5.795 20 Si 0.911 3.089 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.207 4.207 25 C -0.069 4.069 26 C -0.128 4.128 27 C -0.107 4.107 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.281 0.719 42 H 0.100 0.900 43 H 0.131 0.869 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 5.415 -0.004 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.064 4.064 3 C -0.230 4.230 4 C 0.092 3.908 5 O -0.203 6.203 6 C 0.019 3.981 7 C -0.205 4.205 8 C -0.237 4.237 9 C -0.051 4.051 10 C -0.005 4.005 11 C -0.255 4.255 12 C 0.080 3.920 13 F -0.147 7.147 14 C -0.212 4.212 15 C 0.123 3.877 16 C -0.488 4.488 17 H 0.099 0.901 18 C -0.144 4.144 19 N -0.421 5.421 20 Si 0.736 3.264 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.227 4.227 25 C -0.087 4.087 26 C -0.128 4.128 27 C -0.164 4.164 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.149 0.851 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.149 0.851 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.012 5.422 -0.195 15.963 hybrid contribution 0.518 -0.086 0.276 0.593 sum -14.495 5.336 0.081 15.446 Atomic orbital electron populations 1.20781 0.91677 1.02396 1.01954 1.19425 0.95353 0.92054 0.99531 1.20959 0.92739 0.98393 1.10926 1.18976 0.89866 0.85772 0.96202 1.86322 1.34959 1.11628 1.87384 1.22369 0.94420 0.84537 0.96806 1.21823 1.00410 0.96130 1.02125 1.22394 1.02065 1.01784 0.97482 1.18380 0.93434 0.89915 1.03405 1.17846 0.88868 0.97496 0.96285 1.20202 0.91476 1.08481 1.05333 1.17595 0.89905 0.94069 0.90408 1.91327 1.81414 1.74950 1.67010 1.21414 1.00789 0.99581 0.99394 1.17275 0.90404 0.89194 0.90866 1.19583 0.98698 1.27832 1.02641 0.90056 1.25930 0.98152 0.94415 0.95910 1.69807 1.17910 1.35737 1.18602 0.86209 0.79821 0.78861 0.81542 1.18364 1.19927 1.19702 1.21108 0.94043 1.04891 1.02636 1.21002 0.92753 0.97186 0.97761 1.19523 0.93480 0.94614 1.05188 1.20710 0.99543 0.94335 1.01777 0.91440 0.91390 0.92047 0.85758 0.91430 0.91301 0.91014 0.91543 0.91347 0.91915 0.91467 0.88146 0.85051 0.90787 0.88232 0.85147 0.91778 0.91701 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.18 36.00 0.33 -0.76 16 2 C -0.06 -0.86 5.88 -104.59 -0.62 -1.48 16 3 C -0.21 -3.08 7.83 -39.47 -0.31 -3.39 16 4 C 0.14 2.43 6.49 -38.87 -0.25 2.17 16 5 O -0.29 -5.09 8.16 -19.26 -0.16 -5.25 16 6 C 0.08 0.97 2.85 -26.73 -0.08 0.89 16 7 C -0.15 -1.70 9.56 37.16 0.36 -1.34 16 8 C -0.18 -1.99 9.14 37.16 0.34 -1.65 16 9 C -0.05 -0.99 5.48 -104.77 -0.57 -1.57 16 10 C 0.00 -0.11 5.27 -104.99 -0.55 -0.66 16 11 C -0.23 -5.61 8.77 -38.89 -0.34 -5.96 16 12 C 0.10 2.53 7.28 -39.55 -0.29 2.25 16 13 F -0.17 -4.14 17.26 2.25 0.04 -4.10 16 14 C -0.19 -5.15 8.65 -38.76 -0.34 -5.49 16 15 C 0.13 3.33 5.57 -106.88 -0.59 2.73 16 16 C -0.46 -11.97 9.06 -37.74 -0.34 -12.31 16 17 H 0.08 2.03 7.88 -52.49 -0.41 1.62 16 18 C 0.07 1.83 5.23 -17.35 -0.09 1.74 16 19 N -0.80 -20.61 10.80 55.55 0.60 -20.01 16 20 Si 0.91 18.53 29.58 -169.99 -5.03 13.50 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 C -0.21 -5.04 9.24 -38.52 -0.36 -5.40 16 25 C -0.07 -1.19 9.14 -39.27 -0.36 -1.55 16 26 C -0.13 -1.85 5.88 -104.65 -0.61 -2.47 16 27 C -0.11 -1.19 9.18 36.01 0.33 -0.86 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.59 6.68 -51.93 -0.35 0.25 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.12 1.51 5.38 -52.49 -0.28 1.23 16 32 H 0.07 0.79 6.39 -51.93 -0.33 0.45 16 33 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.71 6.77 -51.93 -0.35 0.36 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 2.30 7.69 -52.48 -0.40 1.90 16 40 H 0.13 3.67 6.11 -52.49 -0.32 3.35 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 42 H 0.10 2.28 8.03 -52.48 -0.42 1.86 16 43 H 0.13 2.21 8.04 -52.49 -0.42 1.78 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 46 H 0.06 0.59 6.68 -51.93 -0.35 0.25 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -28.78 377.86 -9.77 -38.55 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.57 Total: 6.73 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: -4.34 Total: -35.10 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.60 Total: -20.01 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.16 Total: -5.25 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.10 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.78 -9.77 -38.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245032701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.821 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds