Wall clock time and date at job start Tue Mar 31 2020 14:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38223 * 119.84848 * 2 1 4 4 C 1.38554 * 120.05607 * 179.76775 * 3 2 1 5 5 O 1.35846 * 120.11426 * 180.27240 * 4 3 2 6 6 C 1.42900 * 116.99766 * 5.28985 * 5 4 3 7 7 C 1.53002 * 109.46994 * 156.37105 * 6 5 4 8 8 C 1.53002 * 109.47094 * 276.36797 * 6 5 4 9 9 C 1.39824 * 119.76808 * 0.49933 * 4 3 2 10 10 C 1.48348 * 120.15407 * 179.72820 * 9 4 3 11 11 C 1.39724 * 119.98564 * 309.75509 * 10 9 4 12 12 C 1.38621 * 120.34620 * 179.72266 * 11 10 9 13 13 F 1.35098 * 119.83449 * 180.27385 * 12 11 10 14 14 C 1.37940 * 120.32606 * 0.54662 * 12 11 10 15 15 C 1.40717 * 119.97718 * 359.72566 * 14 12 11 16 16 C 1.41424 * 120.17403 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99803 * 153.48890 * 16 15 14 18 18 C 1.39915 * 120.00435 * 333.49158 * 16 15 14 19 19 N 1.30841 * 119.99786 * 347.09580 * 18 16 15 20 20 Si 1.86800 * 120.00639 * 167.09061 * 18 16 15 21 21 H 1.48507 * 109.46513 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47024 * 119.99996 * 20 18 16 23 23 H 1.48504 * 109.47342 * 240.00615 * 20 18 16 24 24 C 1.38758 * 119.99369 * 130.02210 * 10 9 4 25 25 C 1.39255 * 119.69853 * 359.75117 * 9 4 3 26 26 C 1.38049 * 119.93629 * 0.02562 * 25 9 4 27 27 C 1.50702 * 119.88356 * 179.97438 * 26 25 9 28 28 H 1.08999 * 109.47462 * 269.72932 * 1 2 3 29 29 H 1.09000 * 109.47282 * 149.72363 * 1 2 3 30 30 H 1.09002 * 109.47140 * 29.72888 * 1 2 3 31 31 H 1.07987 * 119.97213 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.47531 * 36.37224 * 6 5 4 33 33 H 1.09012 * 109.47038 * 59.99835 * 7 6 5 34 34 H 1.09000 * 109.47344 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47395 * 299.99993 * 7 6 5 36 36 H 1.09001 * 109.46876 * 300.00648 * 8 6 5 37 37 H 1.08997 * 109.46996 * 60.00429 * 8 6 5 38 38 H 1.08994 * 109.47467 * 180.02562 * 8 6 5 39 39 H 1.08003 * 119.82815 * 359.97438 * 11 10 9 40 40 H 1.08001 * 120.01030 * 179.75089 * 14 12 11 41 41 H 0.96998 * 119.99998 * 180.02562 * 19 18 16 42 42 H 1.08008 * 120.15848 * 0.02562 * 24 10 9 43 43 H 1.07999 * 120.03449 * 180.02562 * 25 9 4 44 44 H 1.08996 * 109.47081 * 270.01693 * 27 26 25 45 45 H 1.09000 * 109.47266 * 30.02202 * 27 26 25 46 46 H 1.08997 * 109.46981 * 150.01598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1989 0.0000 4 6 3.5804 1.2039 0.0049 5 8 4.2577 2.3815 0.0105 6 6 3.4817 3.5756 0.1284 7 6 4.3541 4.6967 0.6968 8 6 2.9614 3.9840 -1.2512 9 6 4.2791 -0.0073 -0.0008 10 6 5.7625 -0.0119 -0.0018 11 6 6.4627 0.7639 -0.9293 12 6 7.8489 0.7697 -0.9331 13 9 8.5153 1.5280 -1.8309 14 6 8.5511 0.0008 -0.0285 15 6 7.8598 -0.7901 0.9080 16 6 8.5756 -1.5796 1.8377 17 1 8.1280 -1.8349 2.7869 18 6 9.8636 -2.0300 1.5280 19 7 10.3094 -1.9434 0.3009 20 14 10.9467 -2.7548 2.8662 21 1 10.2139 -2.7406 4.1578 22 1 11.3004 -4.1532 2.5135 23 1 12.1866 -1.9470 2.9912 24 6 6.4544 -0.7908 0.9147 25 6 3.5760 -1.2093 -0.0061 26 6 2.1955 -1.1999 -0.0062 27 6 1.4358 -2.5015 -0.0124 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3634 -0.8875 -0.5181 30 1 -0.3633 0.8924 -0.5096 31 1 1.6521 2.1324 0.0004 32 1 2.6391 3.3969 0.7962 33 1 5.1969 4.8754 0.0289 34 1 3.7624 5.6077 0.7864 35 1 4.7248 4.4057 1.6796 36 1 3.8041 4.1627 -1.9191 37 1 2.3399 3.1854 -1.6562 38 1 2.3699 4.8951 -1.1614 39 1 5.9210 1.3654 -1.6443 40 1 9.6310 0.0060 -0.0386 41 1 11.2022 -2.2559 0.0861 42 1 5.9154 -1.3950 1.6296 43 1 4.1101 -2.1479 -0.0100 44 1 1.2531 -2.8105 -1.0416 45 1 2.0211 -3.2662 0.4982 46 1 0.4839 -2.3690 0.5017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245032701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:43 Heat of formation + Delta-G solvation = -78.041304 kcal Electronic energy + Delta-G solvation = -27790.625095 eV Core-core repulsion = 23944.060716 eV Total energy + Delta-G solvation = -3846.564380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.60108 -41.45560 -39.36617 -38.88080 -35.91443 -34.58575 -33.45684 -32.54990 -31.63630 -30.71466 -28.38907 -27.73898 -27.44550 -26.72674 -23.85152 -23.41902 -22.59093 -21.65350 -21.21758 -19.44556 -18.44610 -17.70122 -17.22287 -16.72389 -16.69046 -16.42282 -16.25012 -16.20969 -15.80478 -15.38923 -15.05936 -14.85869 -14.71143 -14.21266 -14.10672 -13.92162 -13.64091 -13.56192 -13.49657 -13.37725 -13.10136 -13.00358 -12.88657 -12.81896 -12.73909 -12.44533 -12.33930 -12.27614 -12.07937 -11.97226 -11.93931 -11.68754 -11.41110 -11.26447 -11.11342 -9.88941 -9.39606 -9.24859 -8.67865 -8.60438 -6.48023 0.15662 0.50678 0.77287 1.02191 1.38375 1.48251 1.54560 2.18987 2.34945 2.58749 2.81828 3.54074 3.62114 3.81835 3.89319 3.92012 4.01475 4.05643 4.16741 4.26079 4.34614 4.48875 4.51478 4.67606 4.69362 4.71139 4.78261 4.81761 4.85075 4.87127 4.90986 4.91706 4.96011 5.01788 5.04892 5.16194 5.23410 5.24091 5.27139 5.31853 5.37743 5.50372 5.64020 5.72098 5.75063 5.89641 5.94614 6.00887 6.24323 6.54651 6.64408 6.83690 6.84839 8.29348 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.003889 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.008856 B = 7198.758634 C = 8701.422807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.053 4.053 3 C -0.208 4.208 4 C 0.129 3.871 5 O -0.323 6.323 6 C 0.065 3.935 7 C -0.147 4.147 8 C -0.174 4.174 9 C -0.098 4.098 10 C 0.012 3.988 11 C -0.239 4.239 12 C 0.090 3.910 13 F -0.167 7.167 14 C -0.221 4.221 15 C 0.104 3.896 16 C -0.488 4.488 17 H 0.085 0.915 18 C 0.032 3.968 19 N -0.828 5.828 20 Si 0.989 3.011 21 H -0.254 1.254 22 H -0.264 1.264 23 H -0.266 1.266 24 C -0.221 4.221 25 C -0.079 4.079 26 C -0.131 4.131 27 C -0.106 4.106 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.289 0.711 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.788 5.514 0.796 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.053 4.053 3 C -0.226 4.226 4 C 0.083 3.917 5 O -0.237 6.237 6 C 0.009 3.991 7 C -0.204 4.204 8 C -0.231 4.231 9 C -0.099 4.099 10 C 0.011 3.989 11 C -0.259 4.259 12 C 0.071 3.929 13 F -0.146 7.146 14 C -0.241 4.241 15 C 0.102 3.898 16 C -0.517 4.517 17 H 0.104 0.896 18 C -0.183 4.183 19 N -0.453 5.453 20 Si 0.809 3.191 21 H -0.177 1.177 22 H -0.188 1.188 23 H -0.191 1.191 24 C -0.241 4.241 25 C -0.097 4.097 26 C -0.131 4.131 27 C -0.162 4.162 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.170 0.830 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.139 0.861 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.364 5.533 0.590 19.188 hybrid contribution 1.382 -0.056 -0.024 1.383 sum -16.982 5.477 0.566 17.853 Atomic orbital electron populations 1.20897 0.88231 1.04102 1.03500 1.19983 0.97743 0.91134 0.96437 1.21266 0.91405 1.00148 1.09831 1.19088 0.91081 0.85175 0.96338 1.86281 1.37098 1.12827 1.87505 1.22736 0.94803 0.83162 0.98377 1.21874 1.00405 0.97251 1.00823 1.22357 1.01748 1.03127 0.95852 1.18354 0.91477 0.92057 1.07969 1.18160 0.91306 0.95123 0.94267 1.20330 0.90726 1.09019 1.05860 1.17779 0.90658 0.94101 0.90358 1.91311 1.81544 1.74863 1.66888 1.21290 1.00002 1.01598 1.01200 1.17615 0.91579 0.89474 0.91180 1.19880 1.00117 1.28740 1.02928 0.89645 1.26877 0.98936 0.94272 0.98193 1.69881 1.18672 1.36145 1.20647 0.85049 0.77534 0.78242 0.78231 1.17703 1.18830 1.19053 1.21253 0.93464 1.05883 1.03459 1.21050 0.94292 0.96037 0.98328 1.19894 0.92394 0.96800 1.04005 1.20782 1.00098 0.92398 1.02925 0.89724 0.89837 0.90354 0.82995 0.89743 0.92880 0.87452 0.92845 0.92906 0.92107 0.88237 0.87460 0.86846 0.89980 0.87471 0.86065 0.90548 0.91815 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.18 71.24 0.65 -0.96 16 2 C -0.05 -1.26 5.88 -19.84 -0.12 -1.38 16 3 C -0.21 -5.54 7.83 22.34 0.17 -5.37 16 4 C 0.13 4.51 6.49 22.73 0.15 4.65 16 5 O -0.32 -11.44 8.16 -91.82 -0.75 -12.19 16 6 C 0.06 1.57 2.85 30.60 0.09 1.66 16 7 C -0.15 -3.24 9.56 71.98 0.69 -2.55 16 8 C -0.17 -3.47 9.14 71.98 0.66 -2.81 16 9 C -0.10 -3.93 5.48 -19.96 -0.11 -4.04 16 10 C 0.01 0.56 5.27 -20.10 -0.11 0.46 16 11 C -0.24 -12.03 8.77 22.72 0.20 -11.83 16 12 C 0.09 4.87 7.28 22.29 0.16 5.03 16 13 F -0.17 -8.66 17.26 44.97 0.78 -7.88 16 14 C -0.22 -12.65 8.65 22.80 0.20 -12.45 16 15 C 0.10 5.85 5.57 -21.33 -0.12 5.73 16 16 C -0.49 -26.57 9.06 23.46 0.21 -26.36 16 17 H 0.09 4.42 7.88 -2.91 -0.02 4.39 16 18 C 0.03 1.63 5.23 85.25 0.45 2.08 16 19 N -0.83 -44.57 10.80 21.82 0.24 -44.33 16 20 Si 0.99 38.42 29.58 68.60 2.03 40.45 16 21 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 24 C -0.22 -11.36 9.24 22.96 0.21 -11.15 16 25 C -0.08 -2.75 9.14 22.47 0.21 -2.54 16 26 C -0.13 -3.52 5.88 -19.88 -0.12 -3.64 16 27 C -0.11 -2.04 9.18 71.24 0.65 -1.38 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.01 6.68 -2.39 -0.02 0.99 16 30 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.15 3.11 5.38 -2.92 -0.02 3.10 16 32 H 0.08 1.74 6.39 -2.39 -0.02 1.72 16 33 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.23 6.77 -2.39 -0.02 1.21 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 5.14 7.69 -2.91 -0.02 5.12 16 40 H 0.11 6.80 6.11 -2.91 -0.02 6.78 16 41 H 0.29 14.04 8.30 -92.71 -0.77 13.28 16 42 H 0.11 5.18 8.03 -2.91 -0.02 5.15 16 43 H 0.12 4.27 8.04 -2.91 -0.02 4.25 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 46 H 0.09 1.27 6.68 -2.39 -0.02 1.25 16 Total: -1.00 -67.03 377.86 7.41 -59.62 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.99 Total: 31.19 kcal Atomic # 6 Polarization: -70.97 SS G_CDS: 4.13 Total: -66.84 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.24 Total: -44.33 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.75 Total: -12.19 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 0.78 Total: -7.88 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -67.03 7.41 -59.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245032701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.426 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds