Wall clock time and date at job start Tue Mar 31 2020 14:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38252 * 119.80963 * 2 1 4 4 C 1.38505 * 120.09027 * 180.02562 * 3 2 1 5 5 O 1.35782 * 120.14063 * 180.02562 * 4 3 2 6 6 C 1.42903 * 117.00153 * 2.12383 * 5 4 3 7 7 C 1.53003 * 109.46840 * 84.15338 * 6 5 4 8 8 C 1.53000 * 109.47400 * 204.15027 * 6 5 4 9 9 C 1.40215 * 119.71841 * 0.02562 * 4 3 2 10 10 C 1.47732 * 120.18192 * 179.97438 * 9 4 3 11 11 C 1.39220 * 120.25198 * 245.24758 * 10 9 4 12 12 C 1.37965 * 120.12589 * 180.27509 * 11 10 9 13 13 C 1.39226 * 120.65868 * 359.44797 * 12 11 10 14 14 F 1.35095 * 119.73820 * 180.28154 * 13 12 11 15 15 C 1.37600 * 120.51532 * 0.29946 * 13 12 11 16 16 C 1.40731 * 119.85177 * 359.97438 * 15 13 12 17 17 C 1.40847 * 120.32306 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00116 * 209.78802 * 17 16 15 19 19 C 1.40041 * 119.99872 * 29.77765 * 17 16 15 20 20 N 1.30793 * 119.99819 * 10.67400 * 19 17 16 21 21 Si 1.86796 * 119.99780 * 190.66854 * 19 17 16 22 22 H 1.48493 * 109.47348 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47191 * 120.00747 * 21 19 17 24 24 H 1.48511 * 109.47157 * 239.99989 * 21 19 17 25 25 C 1.39623 * 119.63118 * 0.24636 * 9 4 3 26 26 C 1.37900 * 119.90344 * 359.49693 * 25 9 4 27 27 C 1.50700 * 119.86258 * 180.25015 * 26 25 9 28 28 H 1.09000 * 109.47064 * 89.99768 * 1 2 3 29 29 H 1.09000 * 109.47096 * 209.99421 * 1 2 3 30 30 H 1.08997 * 109.47231 * 329.99611 * 1 2 3 31 31 H 1.07999 * 119.95538 * 0.05329 * 3 2 1 32 32 H 1.08997 * 109.46965 * 324.15509 * 6 5 4 33 33 H 1.08997 * 109.47202 * 60.00316 * 7 6 5 34 34 H 1.09002 * 109.47023 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47091 * 299.99871 * 7 6 5 36 36 H 1.09003 * 109.46906 * 60.00299 * 8 6 5 37 37 H 1.08995 * 109.47140 * 179.97438 * 8 6 5 38 38 H 1.08997 * 109.47454 * 300.00182 * 8 6 5 39 39 H 1.07993 * 119.94179 * 359.97438 * 11 10 9 40 40 H 1.08000 * 119.67107 * 179.72890 * 12 11 10 41 41 H 1.08003 * 120.07410 * 180.02562 * 15 13 12 42 42 H 0.97009 * 119.99799 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.04998 * 179.75175 * 25 9 4 44 44 H 1.09000 * 109.47519 * 270.25655 * 27 26 25 45 45 H 1.09001 * 109.47001 * 30.25575 * 27 26 25 46 46 H 1.08998 * 109.47243 * 150.25759 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1942 1.1996 0.0000 4 6 3.5792 1.2064 -0.0005 5 8 4.2553 2.3839 0.0000 6 6 3.4749 3.5801 0.0483 7 6 3.1201 3.8991 1.5020 8 6 4.2789 4.7380 -0.5463 9 6 4.2803 -0.0079 -0.0016 10 6 5.7576 -0.0127 -0.0028 11 6 6.4565 -0.5179 -1.0957 12 6 7.8362 -0.5263 -1.0916 13 6 8.5460 -0.0217 -0.0053 14 9 9.8967 -0.0339 -0.0234 15 6 7.8824 0.4888 1.0867 16 6 6.4753 0.5027 1.1078 17 6 5.7859 1.0235 2.2202 18 1 4.8125 0.6358 2.4822 19 6 6.3628 2.0438 2.9866 20 7 7.4355 2.6569 2.5577 21 14 5.6000 2.5291 4.6211 22 1 4.4023 1.6895 4.8772 23 1 6.5895 2.3243 5.7094 24 1 5.2022 3.9593 4.5766 25 6 3.5744 -1.2126 -0.0074 26 6 2.1955 -1.2014 -0.0014 27 6 1.4345 -2.5022 -0.0019 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 1.6504 2.1327 0.0009 32 1 2.5596 3.4401 -0.5268 33 1 4.0353 4.0390 2.0771 34 1 2.5244 4.8112 1.5388 35 1 2.5472 3.0742 1.9256 36 1 4.5317 4.5108 -1.5820 37 1 3.6834 5.6502 -0.5099 38 1 5.1942 4.8780 0.0288 39 1 5.9178 -0.9086 -1.9462 40 1 8.3709 -0.9240 -1.9414 41 1 8.4401 0.8788 1.9253 42 1 7.8349 3.3640 3.0884 43 1 4.1075 -2.1518 -0.0123 44 1 1.2506 -2.8152 -1.0297 45 1 2.0195 -3.2655 0.5112 46 1 0.4831 -2.3667 0.5123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245032862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:23 Heat of formation + Delta-G solvation = -69.713899 kcal Electronic energy + Delta-G solvation = -28933.542458 eV Core-core repulsion = 25087.339182 eV Total energy + Delta-G solvation = -3846.203276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.55171 -41.23517 -39.22269 -38.71553 -35.54934 -34.67805 -33.38035 -32.39786 -31.62811 -30.60932 -28.36395 -27.85691 -27.22233 -26.39124 -23.74537 -23.13801 -22.86550 -21.43762 -20.88158 -19.43290 -18.55898 -17.74947 -17.07083 -16.74264 -16.57523 -16.37297 -16.20713 -16.11466 -15.31856 -15.09754 -14.93215 -14.82946 -14.63159 -14.32706 -14.05895 -13.89525 -13.67612 -13.49479 -13.42124 -13.30453 -13.09754 -13.04948 -12.87434 -12.79378 -12.62006 -12.46604 -12.25794 -12.15641 -12.09976 -11.93464 -11.79428 -11.46008 -11.28312 -11.11109 -11.08389 -9.55004 -9.40716 -9.08095 -8.66311 -8.43182 -6.33628 0.41525 0.70630 0.88051 0.99971 1.31128 1.41339 1.43921 2.15480 2.57076 2.68969 2.96330 3.59706 3.81330 3.87434 3.96817 4.06430 4.09359 4.15295 4.25318 4.35312 4.44287 4.52738 4.57371 4.66635 4.68720 4.80980 4.82787 4.84807 4.86622 4.92415 4.99463 5.01937 5.05836 5.11217 5.15193 5.21679 5.29151 5.29462 5.31190 5.43608 5.53091 5.68393 5.71397 5.79400 5.85892 5.95926 6.05956 6.20019 6.33324 6.60984 6.90035 6.91216 6.98478 8.33775 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009012 B = 0.006213 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.271005 B = 4505.359365 C = 5806.204640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.065 4.065 3 C -0.221 4.221 4 C 0.135 3.865 5 O -0.306 6.306 6 C 0.068 3.932 7 C -0.170 4.170 8 C -0.141 4.141 9 C -0.060 4.060 10 C -0.163 4.163 11 C -0.057 4.057 12 C -0.274 4.274 13 C 0.086 3.914 14 F -0.169 7.169 15 C -0.220 4.220 16 C 0.130 3.870 17 C -0.437 4.437 18 H 0.068 0.932 19 C 0.047 3.953 20 N -0.819 5.819 21 Si 0.955 3.045 22 H -0.258 1.258 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.090 4.090 26 C -0.137 4.137 27 C -0.103 4.103 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.285 0.715 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 -0.135 -3.294 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.065 4.065 3 C -0.240 4.240 4 C 0.089 3.911 5 O -0.219 6.219 6 C 0.012 3.988 7 C -0.228 4.228 8 C -0.198 4.198 9 C -0.060 4.060 10 C -0.165 4.165 11 C -0.076 4.076 12 C -0.294 4.294 13 C 0.067 3.933 14 F -0.148 7.148 15 C -0.240 4.240 16 C 0.127 3.873 17 C -0.466 4.466 18 H 0.086 0.914 19 C -0.169 4.169 20 N -0.445 5.445 21 Si 0.776 3.224 22 H -0.181 1.181 23 H -0.192 1.192 24 H -0.184 1.184 25 C -0.108 4.108 26 C -0.137 4.137 27 C -0.159 4.159 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.096 0.904 43 H 0.141 0.859 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.587 0.116 -3.234 14.942 hybrid contribution 0.901 0.565 0.838 1.353 sum -13.686 0.681 -2.396 13.911 Atomic orbital electron populations 1.20872 0.88808 1.03634 1.03191 1.19872 0.97359 0.91290 0.97980 1.21181 0.91955 0.99768 1.11078 1.19299 0.90686 0.85770 0.95313 1.86366 1.35970 1.12281 1.87327 1.22590 0.95133 0.83945 0.97101 1.22291 1.01583 1.02775 0.96108 1.21803 1.00435 0.96916 1.00630 1.18142 0.91932 0.91058 1.04909 1.18805 0.91598 1.10832 0.95252 1.20687 0.92581 0.97417 0.96877 1.20442 0.94718 1.14669 0.99557 1.17967 0.75298 1.02559 0.97437 1.91309 1.31196 1.95172 1.97143 1.21179 0.95941 1.08414 0.98484 1.17523 0.90129 0.87962 0.91725 1.19316 1.02818 1.15760 1.08692 0.91433 1.26524 0.94350 0.94878 1.01131 1.69858 1.18833 1.18408 1.37359 0.85560 0.79590 0.79303 0.77910 1.18138 1.19166 1.18433 1.21084 0.93968 0.96047 0.99678 1.19810 0.92748 0.96371 1.04814 1.20766 0.99881 0.92473 1.02769 0.89946 0.89826 0.91159 0.84158 0.89580 0.94184 0.88533 0.92751 0.92301 0.87731 0.94057 0.85740 0.85858 0.87383 0.90393 0.85949 0.90515 0.91961 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.59 71.23 0.68 -1.36 16 2 C -0.06 -1.84 5.89 -19.81 -0.12 -1.95 16 3 C -0.22 -7.17 8.01 22.34 0.18 -6.99 16 4 C 0.14 5.48 5.93 22.81 0.14 5.61 16 5 O -0.31 -13.12 8.36 -91.11 -0.76 -13.88 16 6 C 0.07 2.19 2.86 30.60 0.09 2.28 16 7 C -0.17 -5.21 9.26 71.98 0.67 -4.55 16 8 C -0.14 -4.10 9.56 71.98 0.69 -3.42 16 9 C -0.06 -2.57 4.41 -19.95 -0.09 -2.66 16 10 C -0.16 -7.97 4.99 -19.62 -0.10 -8.07 16 11 C -0.06 -2.60 9.71 22.44 0.22 -2.38 16 12 C -0.27 -12.76 10.01 22.44 0.22 -12.53 16 13 C 0.09 4.48 7.28 22.36 0.16 4.64 16 14 F -0.17 -8.45 17.26 44.97 0.78 -7.67 16 15 C -0.22 -12.24 8.61 22.73 0.20 -12.04 16 16 C 0.13 7.02 5.38 -21.12 -0.11 6.90 16 17 C -0.44 -23.18 7.26 23.35 0.17 -23.01 16 18 H 0.07 3.62 7.27 -2.91 -0.02 3.60 16 19 C 0.05 2.35 5.25 85.28 0.45 2.80 16 20 N -0.82 -43.37 10.90 21.84 0.24 -43.13 16 21 Si 0.95 38.71 29.57 68.60 2.03 40.74 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 C -0.09 -3.27 9.39 22.52 0.21 -3.06 16 26 C -0.14 -4.09 5.88 -19.89 -0.12 -4.20 16 27 C -0.10 -2.16 9.59 71.24 0.68 -1.48 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.32 5.92 -2.39 -0.01 1.31 16 30 H 0.07 1.19 8.08 -2.39 -0.02 1.18 16 31 H 0.14 3.82 5.67 -2.91 -0.02 3.80 16 32 H 0.09 2.30 5.99 -2.39 -0.01 2.28 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.70 7.36 -2.39 -0.02 1.68 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 40 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 41 H 0.11 6.34 6.29 -2.91 -0.02 6.32 16 42 H 0.29 13.81 8.30 -92.70 -0.77 13.04 16 43 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16 46 H 0.08 1.41 5.92 -2.39 -0.01 1.40 16 Total: -1.00 -64.06 376.31 7.49 -56.56 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.99 Total: 32.85 kcal Atomic # 6 Polarization: -69.69 SS G_CDS: 4.22 Total: -65.47 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.24 Total: -43.13 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.76 Total: -13.88 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.78 Total: -7.67 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -64.06 7.49 -56.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245032862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.150 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds