Wall clock time and date at job start Tue Mar 31 2020 15:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38228 * 119.61821 * 2 1 4 4 C 1.38631 * 119.15855 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.78540 * 179.97438 * 4 3 2 6 6 F 1.39903 * 109.47621 * 5.19328 * 5 4 3 7 7 F 1.39906 * 109.46993 * 125.19420 * 5 4 3 8 8 F 1.39900 * 109.47019 * 245.19324 * 5 4 3 9 9 C 1.38661 * 118.42152 * 359.97438 * 4 3 2 10 10 C 1.50701 * 120.42156 * 180.02562 * 9 4 3 11 11 N 1.46902 * 109.47021 * 285.46740 * 10 9 4 12 12 C 1.46849 * 111.00154 * 164.48984 * 11 10 9 13 13 C 1.53036 * 109.51347 * 185.84050 * 12 11 10 14 14 C 1.53118 * 109.28044 * 300.80534 * 13 12 11 15 15 C 1.50696 * 109.57341 * 177.60287 * 14 13 12 16 16 H 1.07999 * 120.00234 * 245.52287 * 15 14 13 17 17 C 1.37879 * 119.99997 * 65.52633 * 15 14 13 18 18 N 1.31513 * 120.00084 * 5.37942 * 17 15 14 19 19 Si 1.86804 * 119.99723 * 185.38170 * 17 15 14 20 20 H 1.48500 * 109.47287 * 84.99972 * 19 17 15 21 21 H 1.48506 * 109.47131 * 204.99379 * 19 17 15 22 22 H 1.48497 * 109.47209 * 324.99653 * 19 17 15 23 23 C 1.53120 * 109.15133 * 57.67136 * 14 13 12 24 24 C 1.46852 * 110.99854 * 288.69816 * 11 10 9 25 25 C 1.38180 * 119.16657 * 0.27431 * 9 4 3 26 26 N 1.31855 * 119.61485 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47003 * 90.00091 * 1 2 3 28 28 H 1.09000 * 109.47500 * 210.00400 * 1 2 3 29 29 H 1.08997 * 109.47153 * 330.00695 * 1 2 3 30 30 H 1.07993 * 120.41842 * 359.94881 * 3 2 1 31 31 H 1.08995 * 109.47706 * 165.46272 * 10 9 4 32 32 H 1.09005 * 109.47196 * 45.45913 * 10 9 4 33 33 H 1.08996 * 109.46193 * 305.85557 * 12 11 10 34 34 H 1.09001 * 109.46444 * 65.83065 * 12 11 10 35 35 H 1.08995 * 109.50321 * 60.75909 * 13 12 11 36 36 H 1.09001 * 109.50070 * 180.87255 * 13 12 11 37 37 H 1.08999 * 109.53113 * 297.76423 * 14 13 12 38 38 H 0.96998 * 119.99899 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.49779 * 182.39896 * 23 14 13 40 40 H 1.08994 * 109.53292 * 62.30354 * 23 14 13 41 41 H 1.09003 * 109.45970 * 294.17756 * 24 11 10 42 42 H 1.08995 * 109.45976 * 54.15319 * 24 11 10 43 43 H 1.08004 * 119.62395 * 179.70464 * 25 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.3581 2.4789 0.0000 6 9 3.4769 3.5592 0.1183 7 9 5.2495 2.4840 1.0783 8 9 5.0735 2.5898 -1.1971 9 6 4.2266 -0.0342 0.0016 10 6 5.7322 -0.0989 0.0028 11 7 6.2383 0.2485 -1.3318 12 6 7.6736 0.5555 -1.2869 13 6 8.1334 1.0519 -2.6596 14 6 7.8565 -0.0298 -3.7072 15 6 8.2526 0.4748 -5.0708 16 1 7.4994 0.6293 -5.8293 17 6 9.5766 0.7393 -5.3502 18 7 10.5056 0.4520 -4.4648 19 14 10.0508 1.5058 -6.9864 20 1 9.9224 2.9825 -6.8970 21 1 11.4556 1.1500 -7.3111 22 1 9.1517 0.9943 -8.0518 23 6 6.3625 -0.3655 -3.6999 24 6 5.9539 -0.8209 -2.2972 25 6 3.4766 -1.1948 -0.0037 26 7 2.1586 -1.1463 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 1.6508 2.1373 -0.0008 31 1 6.0524 -1.1081 0.2615 32 1 6.1256 0.6061 0.7353 33 1 7.8565 1.3289 -0.5410 34 1 8.2292 -0.3439 -1.0212 35 1 7.5880 1.9590 -2.9199 36 1 9.2020 1.2650 -2.6303 37 1 8.4320 -0.9241 -3.4685 38 1 11.4370 0.6384 -4.6612 39 1 6.1659 -1.1654 -4.4139 40 1 5.7889 0.5189 -3.9770 41 1 6.5176 -1.7137 -2.0266 42 1 4.8877 -1.0469 -2.2851 43 1 3.9754 -2.1527 -0.0077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249514221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:27 Heat of formation + Delta-G solvation = -118.756645 kcal Electronic energy + Delta-G solvation = -29483.195139 eV Core-core repulsion = 25112.928431 eV Total energy + Delta-G solvation = -4370.266708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.04740 -47.66836 -47.30953 -40.74349 -38.24906 -34.89856 -33.31341 -32.88851 -31.27672 -29.90323 -28.71084 -26.61460 -26.10203 -24.31357 -22.96048 -22.23511 -21.66944 -20.99050 -18.70413 -18.46593 -18.28195 -18.01491 -16.59076 -16.39188 -15.69415 -15.46393 -15.16627 -14.76124 -14.49512 -14.39906 -14.31449 -14.11457 -14.01913 -13.79016 -13.54774 -13.35483 -13.13027 -12.84151 -12.73857 -12.62106 -12.50039 -12.31528 -12.12172 -11.78453 -11.69632 -11.34226 -11.01686 -10.81547 -10.49096 -10.24311 -10.23343 -10.06881 -9.77922 -9.44134 -9.08839 -8.90381 -8.73560 -8.28377 -7.86042 -5.97428 -3.99599 0.64117 0.76441 2.64387 3.30849 3.33697 3.39867 3.42837 3.69748 3.94404 4.01287 4.29304 4.47661 4.50377 4.52083 4.65969 4.74345 5.02236 5.07712 5.25131 5.31065 5.34906 5.42500 5.52740 5.60616 5.68622 5.71730 5.80505 5.91809 6.05510 6.15875 6.28616 6.31339 6.54217 6.61908 6.83109 7.05543 7.11867 7.36636 7.55706 7.59533 7.63677 7.81603 8.04433 8.08445 8.49970 9.04352 9.64119 11.11277 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.003589 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.345358 B = 7799.875304 C = 8223.371737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.122 3.878 3 C -0.129 4.129 4 C -0.113 4.113 5 C 0.509 3.491 6 F -0.184 7.184 7 F -0.178 7.178 8 F -0.140 7.140 9 C -0.075 4.075 10 C 0.072 3.928 11 N -0.524 5.524 12 C 0.061 3.939 13 C -0.098 4.098 14 C 0.048 3.952 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.104 4.104 24 C 0.060 3.940 25 C 0.112 3.888 26 N -0.463 5.463 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.026 0.974 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.026 0.974 38 H 0.259 0.741 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.027 0.973 42 H 0.054 0.946 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.628 0.289 13.258 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.149 4.149 4 C -0.122 4.122 5 C 0.455 3.545 6 F -0.166 7.166 7 F -0.159 7.159 8 F -0.121 7.121 9 C -0.078 4.078 10 C -0.057 4.057 11 N -0.249 5.249 12 C -0.066 4.066 13 C -0.137 4.137 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.715 3.285 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.142 4.142 24 C -0.068 4.068 25 C -0.046 4.046 26 N -0.172 5.172 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.165 0.835 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.110 -0.026 13.116 21.558 hybrid contribution 1.450 0.723 -0.615 1.733 sum -15.660 0.697 12.501 20.049 Atomic orbital electron populations 1.20718 0.88087 1.03669 1.03483 1.21281 0.97342 0.87596 0.95410 1.21825 0.92739 1.00671 0.99699 1.20277 0.94497 0.93011 1.04450 1.18076 0.77868 0.83393 0.75163 1.93148 1.69047 1.58477 1.95912 1.93154 1.69774 1.96575 1.56385 1.93415 1.78209 1.96100 1.44362 1.20696 0.97909 0.92453 0.96763 1.21267 0.88742 1.01559 0.94103 1.62074 1.17607 1.41335 1.03899 1.22258 0.84964 0.98601 1.00777 1.21592 1.01408 0.99532 0.91120 1.18680 0.89331 0.94681 0.94355 1.21169 0.92410 1.43741 0.97551 0.92831 1.24956 0.96634 0.95651 0.96639 1.69930 1.00461 1.47719 1.34960 0.86691 0.77487 0.79839 0.84456 1.20636 1.21419 1.20060 1.21655 1.00248 0.99931 0.92376 1.22168 0.98744 0.91523 0.94334 1.22739 0.88895 0.97823 0.95163 1.67545 1.09791 1.29329 1.10535 0.90033 0.90191 0.90501 0.83488 0.93015 0.88891 0.92531 0.95556 0.93474 0.90277 0.95554 0.93124 0.93146 0.92597 0.95445 0.92773 0.81843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.17 36.01 0.37 -0.36 16 2 C 0.12 1.29 6.78 -82.59 -0.56 0.73 16 3 C -0.13 -1.40 9.13 -39.44 -0.36 -1.76 16 4 C -0.11 -1.44 5.40 -104.32 -0.56 -2.00 16 5 C 0.51 7.00 2.90 36.00 0.10 7.10 16 6 F -0.18 -2.35 16.09 2.25 0.04 -2.31 16 7 F -0.18 -2.43 15.17 2.25 0.03 -2.40 16 8 F -0.14 -2.33 15.38 2.25 0.03 -2.29 16 9 C -0.08 -0.96 4.62 -104.49 -0.48 -1.45 16 10 C 0.07 0.97 4.47 -4.97 -0.02 0.95 16 11 N -0.52 -8.84 2.83 -236.11 -0.67 -9.51 16 12 C 0.06 1.15 5.45 -3.83 -0.02 1.12 16 13 C -0.10 -2.27 5.18 -26.65 -0.14 -2.41 16 14 C 0.05 1.18 2.03 -91.65 -0.19 1.00 16 15 C -0.51 -14.04 8.50 -34.44 -0.29 -14.33 16 16 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 17 C 0.06 1.73 5.28 -17.82 -0.09 1.63 16 18 N -0.89 -25.52 11.99 55.43 0.66 -24.85 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.10 -2.18 5.32 -26.65 -0.14 -2.32 16 24 C 0.06 1.04 5.30 -3.83 -0.02 1.02 16 25 C 0.11 1.32 10.20 -17.55 -0.18 1.14 16 26 N -0.46 -5.59 10.27 -9.47 -0.10 -5.69 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.15 1.27 7.28 -52.49 -0.38 0.89 16 31 H 0.05 0.63 7.88 -51.93 -0.41 0.22 16 32 H 0.09 1.25 5.81 -51.93 -0.30 0.94 16 33 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 2.03 6.81 -51.93 -0.35 1.68 16 37 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.87 6.82 -51.93 -0.35 0.51 16 43 H 0.16 1.60 8.01 -52.48 -0.42 1.18 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -29.47 353.16 -8.26 -37.73 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.98 Total: -2.50 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.59 Total: -9.93 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.10 Total: -40.05 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.11 Total: -7.00 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.47 -8.26 -37.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249514221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.025 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds