Wall clock time and date at job start Tue Mar 31 2020 15:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38228 * 119.61821 * 2 1 4 4 C 1.38631 * 119.15855 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.78540 * 179.97438 * 4 3 2 6 6 F 1.39903 * 109.47621 * 5.19328 * 5 4 3 7 7 F 1.39906 * 109.46993 * 125.19420 * 5 4 3 8 8 F 1.39900 * 109.47019 * 245.19324 * 5 4 3 9 9 C 1.38661 * 118.42152 * 359.97438 * 4 3 2 10 10 C 1.50701 * 120.42156 * 180.02562 * 9 4 3 11 11 N 1.46902 * 109.47021 * 285.46740 * 10 9 4 12 12 C 1.46849 * 111.00154 * 164.48984 * 11 10 9 13 13 C 1.53036 * 109.51347 * 185.84050 * 12 11 10 14 14 C 1.53118 * 109.28044 * 300.80534 * 13 12 11 15 15 C 1.50696 * 109.57341 * 177.60287 * 14 13 12 16 16 H 1.07999 * 120.00234 * 245.52287 * 15 14 13 17 17 C 1.37879 * 119.99997 * 65.52633 * 15 14 13 18 18 N 1.31513 * 120.00084 * 5.37942 * 17 15 14 19 19 Si 1.86804 * 119.99723 * 185.38170 * 17 15 14 20 20 H 1.48500 * 109.47287 * 84.99972 * 19 17 15 21 21 H 1.48506 * 109.47131 * 204.99379 * 19 17 15 22 22 H 1.48497 * 109.47209 * 324.99653 * 19 17 15 23 23 C 1.53120 * 109.15133 * 57.67136 * 14 13 12 24 24 C 1.46852 * 110.99854 * 288.69816 * 11 10 9 25 25 C 1.38180 * 119.16657 * 0.27431 * 9 4 3 26 26 N 1.31855 * 119.61485 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47003 * 90.00091 * 1 2 3 28 28 H 1.09000 * 109.47500 * 210.00400 * 1 2 3 29 29 H 1.08997 * 109.47153 * 330.00695 * 1 2 3 30 30 H 1.07993 * 120.41842 * 359.94881 * 3 2 1 31 31 H 1.08995 * 109.47706 * 165.46272 * 10 9 4 32 32 H 1.09005 * 109.47196 * 45.45913 * 10 9 4 33 33 H 1.08996 * 109.46193 * 305.85557 * 12 11 10 34 34 H 1.09001 * 109.46444 * 65.83065 * 12 11 10 35 35 H 1.08995 * 109.50321 * 60.75909 * 13 12 11 36 36 H 1.09001 * 109.50070 * 180.87255 * 13 12 11 37 37 H 1.08999 * 109.53113 * 297.76423 * 14 13 12 38 38 H 0.96998 * 119.99899 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.49779 * 182.39896 * 23 14 13 40 40 H 1.08994 * 109.53292 * 62.30354 * 23 14 13 41 41 H 1.09003 * 109.45970 * 294.17756 * 24 11 10 42 42 H 1.08995 * 109.45976 * 54.15319 * 24 11 10 43 43 H 1.08004 * 119.62395 * 179.70464 * 25 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.3581 2.4789 0.0000 6 9 3.4769 3.5592 0.1183 7 9 5.2495 2.4840 1.0783 8 9 5.0735 2.5898 -1.1971 9 6 4.2266 -0.0342 0.0016 10 6 5.7322 -0.0989 0.0028 11 7 6.2383 0.2485 -1.3318 12 6 7.6736 0.5555 -1.2869 13 6 8.1334 1.0519 -2.6596 14 6 7.8565 -0.0298 -3.7072 15 6 8.2526 0.4748 -5.0708 16 1 7.4994 0.6293 -5.8293 17 6 9.5766 0.7393 -5.3502 18 7 10.5056 0.4520 -4.4648 19 14 10.0508 1.5058 -6.9864 20 1 9.9224 2.9825 -6.8970 21 1 11.4556 1.1500 -7.3111 22 1 9.1517 0.9943 -8.0518 23 6 6.3625 -0.3655 -3.6999 24 6 5.9539 -0.8209 -2.2972 25 6 3.4766 -1.1948 -0.0037 26 7 2.1586 -1.1463 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 1.6508 2.1373 -0.0008 31 1 6.0524 -1.1081 0.2615 32 1 6.1256 0.6061 0.7353 33 1 7.8565 1.3289 -0.5410 34 1 8.2292 -0.3439 -1.0212 35 1 7.5880 1.9590 -2.9199 36 1 9.2020 1.2650 -2.6303 37 1 8.4320 -0.9241 -3.4685 38 1 11.4370 0.6384 -4.6612 39 1 6.1659 -1.1654 -4.4139 40 1 5.7889 0.5189 -3.9770 41 1 6.5176 -1.7137 -2.0266 42 1 4.8877 -1.0469 -2.2851 43 1 3.9754 -2.1527 -0.0077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249514221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:26 Heat of formation + Delta-G solvation = -133.945759 kcal Electronic energy + Delta-G solvation = -29483.853788 eV Core-core repulsion = 25112.928431 eV Total energy + Delta-G solvation = -4370.925357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.12732 -48.71412 -48.46696 -41.63439 -39.72273 -36.29212 -34.71603 -33.85680 -32.91278 -31.49863 -29.83051 -27.67540 -27.53323 -25.68297 -24.00015 -23.78115 -23.13460 -22.14428 -20.37250 -19.57389 -19.38212 -18.97400 -18.44355 -17.50846 -16.96151 -16.64226 -16.43650 -16.01843 -15.81927 -15.48105 -15.36265 -15.26289 -15.17316 -14.94745 -14.77368 -14.68410 -14.48450 -14.36057 -14.20881 -13.79161 -13.44394 -13.34100 -13.10687 -12.99409 -12.93293 -12.88175 -12.81681 -12.59889 -12.23591 -12.04180 -11.89717 -11.36178 -11.17893 -10.78455 -10.70702 -10.62882 -10.39452 -9.93520 -9.20834 -8.10526 -6.19770 -0.27246 -0.08046 1.40053 1.41512 1.50214 1.62244 2.42625 2.44131 2.67796 2.98700 3.02714 3.19372 3.23958 3.47379 3.59039 3.72506 3.85331 4.12456 4.17661 4.20828 4.32698 4.41783 4.46177 4.55887 4.60579 4.66771 4.76166 4.81913 4.86851 4.91349 4.94469 4.97653 5.08325 5.17300 5.22977 5.32224 5.52737 5.52888 5.62840 5.96744 5.99958 6.21196 6.25863 6.41608 6.79653 6.91886 7.47065 8.96987 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.003589 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.345358 B = 7799.875304 C = 8223.371737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.122 3.878 3 C -0.130 4.130 4 C -0.123 4.123 5 C 0.508 3.492 6 F -0.179 7.179 7 F -0.179 7.179 8 F -0.161 7.161 9 C -0.089 4.089 10 C 0.076 3.924 11 N -0.531 5.531 12 C 0.074 3.926 13 C -0.087 4.087 14 C 0.046 3.954 15 C -0.533 4.533 16 H 0.047 0.953 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.097 4.097 24 C 0.071 3.929 25 C 0.112 3.888 26 N -0.479 5.479 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.168 0.832 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.031 0.969 36 H 0.046 0.954 37 H -0.004 1.004 38 H 0.260 0.740 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.697 0.120 13.935 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.016 4.016 3 C -0.149 4.149 4 C -0.133 4.133 5 C 0.454 3.546 6 F -0.160 7.160 7 F -0.161 7.161 8 F -0.142 7.142 9 C -0.092 4.092 10 C -0.052 4.052 11 N -0.255 5.255 12 C -0.053 4.053 13 C -0.126 4.126 14 C 0.028 3.972 15 C -0.571 4.571 16 H 0.066 0.934 17 C -0.184 4.184 18 N -0.557 5.557 19 Si 0.774 3.226 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.135 4.135 24 C -0.057 4.057 25 C -0.045 4.045 26 N -0.188 5.188 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.186 0.814 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.014 0.986 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -19.196 -0.198 13.801 23.643 hybrid contribution 2.020 0.797 -0.803 2.315 sum -17.177 0.599 12.997 21.548 Atomic orbital electron populations 1.20846 0.85591 1.05006 1.04414 1.21867 0.98970 0.87047 0.93676 1.22094 0.92012 1.01832 0.98977 1.20340 0.95322 0.92322 1.05268 1.18231 0.77834 0.84164 0.74362 1.93151 1.68700 1.58367 1.95821 1.93146 1.69976 1.96634 1.56295 1.93371 1.78852 1.96278 1.45725 1.20603 0.97193 0.92935 0.98480 1.21254 0.89488 1.02610 0.91835 1.61944 1.15939 1.41666 1.05979 1.21979 0.86455 0.98783 0.98124 1.21329 0.99221 0.98513 0.93527 1.18630 0.91389 0.93615 0.93576 1.21552 0.92655 1.44010 0.98862 0.93432 1.25688 0.96661 0.96058 0.99958 1.70047 1.00635 1.48442 1.36601 0.85726 0.77273 0.78970 0.80634 1.20231 1.20912 1.19424 1.21502 0.97362 0.99514 0.95111 1.22011 0.99926 0.91540 0.92221 1.23009 0.88976 0.98174 0.94382 1.67642 1.09893 1.30083 1.11161 0.89120 0.89854 0.88241 0.81449 0.91139 0.88767 0.91172 0.95712 0.95009 0.93499 0.98576 0.93116 0.93090 0.93689 0.94997 0.90629 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.17 71.24 0.72 -0.38 16 2 C 0.12 2.25 6.78 42.55 0.29 2.54 16 3 C -0.13 -2.47 9.13 22.36 0.20 -2.27 16 4 C -0.12 -2.91 5.40 -19.67 -0.11 -3.01 16 5 C 0.51 13.38 2.90 71.23 0.21 13.58 16 6 F -0.18 -4.29 16.09 44.97 0.72 -3.57 16 7 F -0.18 -4.72 15.17 44.97 0.68 -4.04 16 8 F -0.16 -5.29 15.38 44.97 0.69 -4.60 16 9 C -0.09 -2.10 4.62 -19.78 -0.09 -2.19 16 10 C 0.08 1.92 4.47 85.56 0.38 2.30 16 11 N -0.53 -17.37 2.83 -900.92 -2.55 -19.92 16 12 C 0.07 2.78 5.45 86.33 0.47 3.25 16 13 C -0.09 -4.17 5.18 30.65 0.16 -4.01 16 14 C 0.05 2.35 2.03 -11.46 -0.02 2.33 16 15 C -0.53 -30.06 8.50 25.60 0.22 -29.84 16 16 H 0.05 2.67 7.75 -2.91 -0.02 2.64 16 17 C 0.01 0.85 5.28 84.66 0.45 1.29 16 18 N -0.92 -53.86 11.99 21.45 0.26 -53.60 16 19 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 C -0.10 -4.08 5.32 30.65 0.16 -3.92 16 24 C 0.07 2.38 5.30 86.32 0.46 2.83 16 25 C 0.11 2.36 10.20 84.67 0.86 3.22 16 26 N -0.48 -10.32 10.27 -183.88 -1.89 -12.21 16 27 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.17 2.40 7.28 -2.91 -0.02 2.38 16 31 H 0.07 1.54 7.88 -2.39 -0.02 1.52 16 32 H 0.09 2.37 5.81 -2.38 -0.01 2.36 16 33 H 0.07 2.44 7.96 -2.39 -0.02 2.42 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 2.51 6.81 -2.39 -0.02 2.49 16 37 H 0.00 -0.22 8.12 -2.39 -0.02 -0.24 16 38 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 42 H 0.08 2.25 6.82 -2.39 -0.02 2.23 16 43 H 0.18 3.01 8.01 -2.91 -0.02 2.99 16 Total: -1.00 -64.52 353.16 5.33 -59.19 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.02 Total: 6.45 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 4.36 Total: -14.27 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -4.18 Total: -85.73 kcal Atomic # 9 Polarization: -14.31 SS G_CDS: 2.10 Total: -12.22 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.52 5.33 -59.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249514221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.756 kcal (2) G-P(sol) polarization free energy of solvation -64.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds