Wall clock time and date at job start Tue Mar 31 2020 15:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38223 * 119.61841 * 2 1 4 4 C 1.38627 * 119.15987 * 180.27432 * 3 2 1 5 5 C 1.50703 * 120.78971 * 179.75392 * 4 3 2 6 6 F 1.39905 * 109.47157 * 359.71697 * 5 4 3 7 7 F 1.39900 * 109.47159 * 239.71998 * 5 4 3 8 8 F 1.39897 * 109.47274 * 119.71689 * 5 4 3 9 9 C 1.38662 * 118.42251 * 359.47933 * 4 3 2 10 10 C 1.50705 * 120.42327 * 180.22957 * 9 4 3 11 11 N 1.46901 * 109.46868 * 79.99822 * 10 9 4 12 12 C 1.46854 * 111.00089 * 45.79211 * 11 10 9 13 13 C 1.53034 * 109.52422 * 185.83782 * 12 11 10 14 14 C 1.53114 * 109.27962 * 300.82110 * 13 12 11 15 15 C 1.53124 * 109.16086 * 57.65696 * 14 13 12 16 16 H 1.08991 * 109.53810 * 62.30300 * 15 14 13 17 17 C 1.50701 * 109.50597 * 182.40699 * 15 14 13 18 18 H 1.07999 * 120.00307 * 119.79347 * 17 15 14 19 19 C 1.37874 * 119.99549 * 299.80170 * 17 15 14 20 20 N 1.31515 * 120.00267 * 359.97438 * 19 17 15 21 21 Si 1.86809 * 120.00016 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46616 * 59.99753 * 21 19 17 23 23 H 1.48492 * 109.47284 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47157 * 300.00235 * 21 19 17 25 25 C 1.46846 * 111.00020 * 170.00084 * 11 10 9 26 26 C 1.38188 * 119.16369 * 0.25159 * 9 4 3 27 27 N 1.31849 * 119.61774 * 179.74577 * 2 1 3 28 28 H 1.08997 * 109.47506 * 270.25524 * 1 2 3 29 29 H 1.09007 * 109.47379 * 30.25539 * 1 2 3 30 30 H 1.09004 * 109.47740 * 150.25580 * 1 2 3 31 31 H 1.08004 * 120.41897 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47165 * 199.99816 * 10 9 4 33 33 H 1.08999 * 109.46520 * 320.00329 * 10 9 4 34 34 H 1.08997 * 109.45943 * 305.85785 * 12 11 10 35 35 H 1.08998 * 109.46138 * 65.82208 * 12 11 10 36 36 H 1.09003 * 109.50383 * 180.87800 * 13 12 11 37 37 H 1.09005 * 109.50254 * 60.76026 * 13 12 11 38 38 H 1.08999 * 109.52640 * 297.74864 * 14 13 12 39 39 H 1.08996 * 109.52742 * 177.55993 * 14 13 12 40 40 H 0.97005 * 120.00014 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.46292 * 294.17961 * 25 11 10 42 42 H 1.08996 * 109.45815 * 54.14582 * 25 11 10 43 43 H 1.07996 * 119.62211 * 180.02562 * 26 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1905 -0.0058 5 6 4.3581 2.4789 -0.0116 6 9 3.4723 3.5619 -0.0164 7 9 5.1638 2.5304 -1.1541 8 9 5.1638 2.5407 1.1304 9 6 4.2266 -0.0342 -0.0003 10 6 5.7322 -0.0988 -0.0011 11 7 6.2327 0.1271 1.3615 12 6 5.4727 -0.6625 2.3390 13 6 5.9222 -0.2939 3.7546 14 6 7.4206 -0.5743 3.8984 15 6 8.1850 0.2229 2.8378 16 1 8.0303 1.2893 3.0016 17 6 9.6555 -0.0927 2.9340 18 1 10.1716 -0.5240 2.0890 19 6 10.3418 0.1690 4.1008 20 7 9.7133 0.6945 5.1297 21 14 12.1644 -0.2229 4.2204 22 1 12.9048 0.5465 3.1883 23 1 12.6635 0.1502 5.5682 24 1 12.3737 -1.6763 3.9993 25 6 7.6700 -0.1607 1.4487 26 6 3.4766 -1.1948 0.0054 27 7 2.1586 -1.1462 0.0051 28 1 -0.3634 0.0046 1.0276 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3635 -0.8923 -0.5099 31 1 1.6507 2.1373 -0.0004 32 1 6.0536 -1.0808 -0.3480 33 1 6.1284 0.6690 -0.6656 34 1 4.4092 -0.4507 2.2288 35 1 5.6513 -1.7238 2.1660 36 1 5.3690 -0.8914 4.4792 37 1 5.7312 0.7643 3.9331 38 1 7.6071 -1.6390 3.7584 39 1 7.7540 -0.2727 4.8913 40 1 10.1961 0.8783 5.9507 41 1 7.8383 -1.2244 1.2799 42 1 8.2023 0.4156 0.6921 43 1 3.9754 -2.1526 0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249515313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:47 Heat of formation + Delta-G solvation = -116.298048 kcal Electronic energy + Delta-G solvation = -29530.026765 eV Core-core repulsion = 25159.866670 eV Total energy + Delta-G solvation = -4370.160095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.04312 -47.65363 -47.31235 -40.83773 -38.23505 -34.88862 -33.27138 -32.83479 -31.57845 -29.92985 -28.57573 -26.62644 -25.45128 -24.88162 -23.18271 -22.13007 -21.71757 -20.78198 -18.72846 -18.46367 -18.27846 -18.00497 -16.59744 -16.44807 -15.68802 -15.41134 -15.18756 -14.68460 -14.44428 -14.39620 -14.31766 -14.04942 -13.97814 -13.74805 -13.53421 -13.33477 -13.27625 -12.97058 -12.76466 -12.66843 -12.47818 -12.25023 -12.12129 -11.88185 -11.66399 -11.47475 -10.92763 -10.71696 -10.69377 -10.31674 -10.13576 -9.86890 -9.80895 -9.47227 -9.12944 -9.01610 -8.71075 -8.29195 -7.72598 -5.96347 -4.02704 0.61285 0.73574 2.63573 3.28805 3.32876 3.37802 3.40014 3.69222 3.93140 4.00121 4.33051 4.47381 4.48935 4.50362 4.65251 4.70924 4.98955 5.06805 5.27387 5.30302 5.33701 5.43004 5.53448 5.57837 5.68996 5.73509 5.77922 5.93436 6.03593 6.21344 6.28804 6.36740 6.48359 6.69308 6.73475 6.94162 7.20603 7.35899 7.57455 7.61956 7.70478 7.77574 8.09152 8.17993 8.47908 9.01051 9.61500 11.09594 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.003602 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.493364 B = 7770.614516 C = 8354.674312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.121 3.879 3 C -0.128 4.128 4 C -0.117 4.117 5 C 0.508 3.492 6 F -0.184 7.184 7 F -0.176 7.176 8 F -0.140 7.140 9 C -0.079 4.079 10 C 0.076 3.924 11 N -0.524 5.524 12 C 0.062 3.938 13 C -0.116 4.116 14 C -0.110 4.110 15 C 0.057 3.943 16 H 0.036 0.964 17 C -0.516 4.516 18 H 0.053 0.947 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.069 3.931 26 C 0.112 3.888 27 N -0.462 5.462 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.024 0.976 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.091 0.909 40 H 0.260 0.740 41 H 0.022 0.978 42 H 0.061 0.939 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.486 0.086 -11.004 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.017 4.017 3 C -0.148 4.148 4 C -0.127 4.127 5 C 0.454 3.546 6 F -0.165 7.165 7 F -0.158 7.158 8 F -0.120 7.120 9 C -0.082 4.082 10 C -0.052 4.052 11 N -0.248 5.248 12 C -0.066 4.066 13 C -0.153 4.153 14 C -0.148 4.148 15 C 0.038 3.962 16 H 0.054 0.946 17 C -0.555 4.555 18 H 0.071 0.929 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.058 4.058 26 C -0.046 4.046 27 N -0.171 5.171 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.166 0.834 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.963 -0.096 -10.695 20.906 hybrid contribution 1.786 -0.101 -0.077 1.791 sum -16.177 -0.197 -10.773 19.437 Atomic orbital electron populations 1.20718 0.88040 1.03711 1.03474 1.21290 0.97369 0.87581 0.95450 1.21832 0.92695 1.00706 0.99562 1.20314 0.94589 0.93011 1.04819 1.18080 0.78051 0.83348 0.75163 1.93149 1.68769 1.58221 1.96369 1.93177 1.74634 1.96578 1.51363 1.93429 1.73324 1.96339 1.48943 1.20722 0.98071 0.92575 0.96796 1.21314 0.87910 1.01942 0.94081 1.62296 1.05383 1.56197 1.00967 1.22082 0.96263 0.94331 0.93881 1.21656 0.99364 1.01008 0.93321 1.21649 0.90519 0.98271 1.04327 1.18646 0.93446 0.96630 0.87462 0.94603 1.21095 0.93837 1.41797 0.98730 0.92892 1.24925 0.97964 0.95034 0.95843 1.69884 1.35794 1.43493 1.03449 0.86693 0.85700 0.78694 0.77087 1.20310 1.21342 1.20404 1.22356 0.83964 0.97578 1.01873 1.22757 0.88912 0.97838 0.95078 1.67545 1.09726 1.29340 1.10466 0.90038 0.90470 0.90171 0.83406 0.93151 0.89110 0.92868 0.95737 0.93624 0.92059 0.95164 0.89109 0.93005 0.95998 0.92054 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.17 36.01 0.37 -0.35 16 2 C 0.12 1.27 6.78 -82.59 -0.56 0.71 16 3 C -0.13 -1.38 9.14 -39.44 -0.36 -1.74 16 4 C -0.12 -1.51 5.40 -104.32 -0.56 -2.08 16 5 C 0.51 7.09 2.88 36.01 0.10 7.19 16 6 F -0.18 -2.35 16.08 2.25 0.04 -2.32 16 7 F -0.18 -2.48 15.48 2.25 0.03 -2.45 16 8 F -0.14 -2.37 15.32 2.25 0.03 -2.33 16 9 C -0.08 -1.04 3.66 -104.48 -0.38 -1.42 16 10 C 0.08 1.09 4.67 -4.97 -0.02 1.07 16 11 N -0.52 -9.32 3.28 -236.11 -0.77 -10.09 16 12 C 0.06 1.08 4.82 -3.83 -0.02 1.06 16 13 C -0.12 -2.27 6.09 -26.66 -0.16 -2.44 16 14 C -0.11 -2.57 5.03 -26.61 -0.13 -2.70 16 15 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 16 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 17 C -0.52 -14.01 8.56 -34.44 -0.29 -14.30 16 18 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.28 11.36 55.43 0.63 -24.65 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.07 1.42 4.65 -3.83 -0.02 1.40 16 26 C 0.11 1.35 9.82 -17.55 -0.17 1.18 16 27 N -0.46 -5.59 10.27 -9.47 -0.10 -5.69 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.15 1.27 7.27 -52.48 -0.38 0.88 16 32 H 0.05 0.67 7.95 -51.93 -0.41 0.25 16 33 H 0.09 1.33 6.11 -51.93 -0.32 1.01 16 34 H 0.05 0.87 6.03 -51.93 -0.31 0.55 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.26 8.12 -51.93 -0.42 0.83 16 43 H 0.16 1.69 8.04 -52.49 -0.42 1.27 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -29.07 350.84 -8.32 -37.39 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.93 Total: -1.79 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.52 Total: -9.55 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: -0.24 Total: -40.43 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.11 Total: -7.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.07 -8.32 -37.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249515313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.903 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds