Wall clock time and date at job start Tue Mar 31 2020 15:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38223 * 119.61841 * 2 1 4 4 C 1.38627 * 119.15987 * 180.27432 * 3 2 1 5 5 C 1.50703 * 120.78971 * 179.75392 * 4 3 2 6 6 F 1.39905 * 109.47157 * 359.71697 * 5 4 3 7 7 F 1.39900 * 109.47159 * 239.71998 * 5 4 3 8 8 F 1.39897 * 109.47274 * 119.71689 * 5 4 3 9 9 C 1.38662 * 118.42251 * 359.47933 * 4 3 2 10 10 C 1.50705 * 120.42327 * 180.22957 * 9 4 3 11 11 N 1.46901 * 109.46868 * 79.99822 * 10 9 4 12 12 C 1.46854 * 111.00089 * 45.79211 * 11 10 9 13 13 C 1.53034 * 109.52422 * 185.83782 * 12 11 10 14 14 C 1.53114 * 109.27962 * 300.82110 * 13 12 11 15 15 C 1.53124 * 109.16086 * 57.65696 * 14 13 12 16 16 H 1.08991 * 109.53810 * 62.30300 * 15 14 13 17 17 C 1.50701 * 109.50597 * 182.40699 * 15 14 13 18 18 H 1.07999 * 120.00307 * 119.79347 * 17 15 14 19 19 C 1.37874 * 119.99549 * 299.80170 * 17 15 14 20 20 N 1.31515 * 120.00267 * 359.97438 * 19 17 15 21 21 Si 1.86809 * 120.00016 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46616 * 59.99753 * 21 19 17 23 23 H 1.48492 * 109.47284 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47157 * 300.00235 * 21 19 17 25 25 C 1.46846 * 111.00020 * 170.00084 * 11 10 9 26 26 C 1.38188 * 119.16369 * 0.25159 * 9 4 3 27 27 N 1.31849 * 119.61774 * 179.74577 * 2 1 3 28 28 H 1.08997 * 109.47506 * 270.25524 * 1 2 3 29 29 H 1.09007 * 109.47379 * 30.25539 * 1 2 3 30 30 H 1.09004 * 109.47740 * 150.25580 * 1 2 3 31 31 H 1.08004 * 120.41897 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47165 * 199.99816 * 10 9 4 33 33 H 1.08999 * 109.46520 * 320.00329 * 10 9 4 34 34 H 1.08997 * 109.45943 * 305.85785 * 12 11 10 35 35 H 1.08998 * 109.46138 * 65.82208 * 12 11 10 36 36 H 1.09003 * 109.50383 * 180.87800 * 13 12 11 37 37 H 1.09005 * 109.50254 * 60.76026 * 13 12 11 38 38 H 1.08999 * 109.52640 * 297.74864 * 14 13 12 39 39 H 1.08996 * 109.52742 * 177.55993 * 14 13 12 40 40 H 0.97005 * 120.00014 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.46292 * 294.17961 * 25 11 10 42 42 H 1.08996 * 109.45815 * 54.14582 * 25 11 10 43 43 H 1.07996 * 119.62211 * 180.02562 * 26 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1905 -0.0058 5 6 4.3581 2.4789 -0.0116 6 9 3.4723 3.5619 -0.0164 7 9 5.1638 2.5304 -1.1541 8 9 5.1638 2.5407 1.1304 9 6 4.2266 -0.0342 -0.0003 10 6 5.7322 -0.0988 -0.0011 11 7 6.2327 0.1271 1.3615 12 6 5.4727 -0.6625 2.3390 13 6 5.9222 -0.2939 3.7546 14 6 7.4206 -0.5743 3.8984 15 6 8.1850 0.2229 2.8378 16 1 8.0303 1.2893 3.0016 17 6 9.6555 -0.0927 2.9340 18 1 10.1716 -0.5240 2.0890 19 6 10.3418 0.1690 4.1008 20 7 9.7133 0.6945 5.1297 21 14 12.1644 -0.2229 4.2204 22 1 12.9048 0.5465 3.1883 23 1 12.6635 0.1502 5.5682 24 1 12.3737 -1.6763 3.9993 25 6 7.6700 -0.1607 1.4487 26 6 3.4766 -1.1948 0.0054 27 7 2.1586 -1.1462 0.0051 28 1 -0.3634 0.0046 1.0276 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3635 -0.8923 -0.5099 31 1 1.6507 2.1373 -0.0004 32 1 6.0536 -1.0808 -0.3480 33 1 6.1284 0.6690 -0.6656 34 1 4.4092 -0.4507 2.2288 35 1 5.6513 -1.7238 2.1660 36 1 5.3690 -0.8914 4.4792 37 1 5.7312 0.7643 3.9331 38 1 7.6071 -1.6390 3.7584 39 1 7.7540 -0.2727 4.8913 40 1 10.1961 0.8783 5.9507 41 1 7.8383 -1.2244 1.2799 42 1 8.2023 0.4156 0.6921 43 1 3.9754 -2.1526 0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249515313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:46 Heat of formation + Delta-G solvation = -131.641838 kcal Electronic energy + Delta-G solvation = -29530.692122 eV Core-core repulsion = 25159.866670 eV Total energy + Delta-G solvation = -4370.825452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.15667 -48.73093 -48.50720 -41.76276 -39.72043 -36.26969 -34.69720 -33.90314 -33.03996 -31.67759 -29.62613 -27.60192 -26.93686 -26.46909 -24.23330 -23.51207 -23.19783 -22.05691 -20.37218 -19.61093 -19.41163 -19.01166 -18.40785 -17.53459 -17.01559 -16.67477 -16.37288 -16.05448 -15.72358 -15.47277 -15.34270 -15.24792 -15.22056 -14.97305 -14.90518 -14.70968 -14.53112 -14.43845 -14.20196 -13.75473 -13.51134 -13.34267 -13.29939 -13.00484 -12.92527 -12.82385 -12.77618 -12.53526 -12.48422 -11.87756 -11.72663 -11.37996 -11.23598 -10.92583 -10.69694 -10.65060 -10.37176 -9.95907 -9.12412 -8.06528 -6.20668 -0.32131 -0.12495 1.42377 1.43619 1.51063 1.58700 2.38702 2.44977 2.64558 2.96089 3.07099 3.18736 3.20685 3.43074 3.51900 3.66437 3.80726 4.09702 4.15405 4.18197 4.28884 4.40032 4.46791 4.56527 4.58615 4.64918 4.72894 4.81713 4.86061 4.89833 4.93259 4.97063 5.07638 5.15497 5.18089 5.37907 5.49878 5.51493 5.64467 5.94689 6.12270 6.20432 6.25038 6.45266 6.75921 6.92173 7.47200 8.97970 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.003602 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.493364 B = 7770.614516 C = 8354.674312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.124 3.876 3 C -0.126 4.126 4 C -0.126 4.126 5 C 0.506 3.494 6 F -0.177 7.177 7 F -0.179 7.179 8 F -0.162 7.162 9 C -0.094 4.094 10 C 0.080 3.920 11 N -0.535 5.535 12 C 0.072 3.928 13 C -0.109 4.109 14 C -0.101 4.101 15 C 0.055 3.945 16 H -0.007 1.007 17 C -0.536 4.536 18 H 0.054 0.946 19 C 0.014 3.986 20 N -0.916 5.916 21 Si 0.954 3.046 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.270 1.270 25 C 0.084 3.916 26 C 0.114 3.886 27 N -0.476 5.476 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.171 0.829 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.026 0.974 39 H 0.056 0.944 40 H 0.259 0.741 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.223 -0.895 -12.172 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.014 4.014 3 C -0.146 4.146 4 C -0.136 4.136 5 C 0.452 3.548 6 F -0.158 7.158 7 F -0.161 7.161 8 F -0.143 7.143 9 C -0.097 4.097 10 C -0.047 4.047 11 N -0.259 5.259 12 C -0.055 4.055 13 C -0.147 4.147 14 C -0.139 4.139 15 C 0.036 3.964 16 H 0.012 0.988 17 C -0.574 4.574 18 H 0.072 0.928 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.779 3.221 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.195 1.195 25 C -0.043 4.043 26 C -0.044 4.044 27 N -0.185 5.185 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.188 0.812 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -19.711 -1.081 -11.882 23.041 hybrid contribution 2.232 0.272 0.259 2.264 sum -17.479 -0.810 -11.623 21.006 Atomic orbital electron populations 1.20856 0.85410 1.05069 1.04519 1.21897 0.99037 0.86957 0.93478 1.22113 0.91802 1.01968 0.98683 1.20351 0.95468 0.92130 1.05635 1.18262 0.77949 0.84255 0.74328 1.93153 1.68335 1.58071 1.96286 1.93165 1.74889 1.96657 1.51374 1.93384 1.74164 1.96521 1.50261 1.20570 0.97014 0.93204 0.98867 1.21247 0.89143 1.02652 0.91707 1.62122 1.03748 1.56842 1.03231 1.21972 0.96892 0.94715 0.91945 1.21556 0.96813 1.00366 0.95952 1.21434 0.93109 0.97465 1.01903 1.18549 0.93079 0.94211 0.90521 0.98841 1.21499 0.95397 1.41709 0.98824 0.92818 1.25718 1.02252 0.94952 0.95568 1.70041 1.37310 1.44337 1.03818 0.85686 0.80547 0.78787 0.77056 1.19764 1.21129 1.19527 1.21988 0.85976 0.97447 0.98936 1.22971 0.89046 0.98002 0.94338 1.67650 1.09659 1.30114 1.11049 0.88964 0.88167 0.89828 0.81201 0.91480 0.89635 0.91149 0.94649 0.91537 0.93748 0.95486 0.92578 0.93149 0.95625 0.92466 0.80327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.17 71.24 0.72 -0.33 16 2 C 0.12 2.23 6.78 42.55 0.29 2.52 16 3 C -0.13 -2.38 9.14 22.36 0.20 -2.17 16 4 C -0.13 -3.04 5.40 -19.67 -0.11 -3.14 16 5 C 0.51 13.79 2.88 71.24 0.21 13.99 16 6 F -0.18 -4.33 16.08 44.97 0.72 -3.61 16 7 F -0.18 -4.99 15.48 44.97 0.70 -4.30 16 8 F -0.16 -5.56 15.32 44.97 0.69 -4.87 16 9 C -0.09 -2.29 3.66 -19.77 -0.07 -2.37 16 10 C 0.08 2.22 4.67 85.56 0.40 2.62 16 11 N -0.53 -18.80 3.28 -900.92 -2.95 -21.75 16 12 C 0.07 2.41 4.82 86.32 0.42 2.82 16 13 C -0.11 -4.28 6.09 30.64 0.19 -4.09 16 14 C -0.10 -4.86 5.03 30.67 0.15 -4.70 16 15 C 0.06 2.83 2.26 -11.48 -0.03 2.80 16 16 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 17 C -0.54 -29.78 8.56 25.60 0.22 -29.56 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 19 C 0.01 0.78 5.30 84.65 0.45 1.22 16 20 N -0.92 -53.84 11.36 21.45 0.24 -53.59 16 21 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.08 3.48 4.65 86.33 0.40 3.88 16 26 C 0.11 2.46 9.82 84.67 0.83 3.29 16 27 N -0.48 -10.20 10.27 -183.89 -1.89 -12.09 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.60 8.08 -2.38 -0.02 0.58 16 30 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.17 2.36 7.27 -2.91 -0.02 2.34 16 32 H 0.07 1.64 7.95 -2.39 -0.02 1.62 16 33 H 0.09 2.45 6.11 -2.39 -0.01 2.44 16 34 H 0.07 2.14 6.03 -2.39 -0.01 2.13 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 3.08 6.17 -2.39 -0.01 3.07 16 40 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 41 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 43 H 0.18 3.18 8.04 -2.91 -0.02 3.16 16 Total: -1.00 -64.29 350.84 4.84 -59.46 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.03 Total: 7.94 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 4.27 Total: -13.21 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -4.60 Total: -87.43 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 2.11 Total: -12.78 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.29 4.84 -59.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249515313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.183 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds