Wall clock time and date at job start Tue Mar 31 2020 15:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36779 * 125.80249 * 2 1 4 4 C 1.47239 * 126.94571 * 359.97438 * 3 2 1 5 5 O 1.21647 * 119.99770 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00327 * 179.97438 * 4 3 2 7 7 C 1.39935 * 120.00102 * 175.49280 * 6 4 3 8 8 C 1.38936 * 120.00600 * 214.86409 * 7 6 4 9 9 C 1.38002 * 119.99721 * 179.74547 * 8 7 6 10 10 C 1.38903 * 120.00355 * 0.50699 * 9 8 7 11 11 O 1.35779 * 119.99607 * 179.74619 * 10 9 8 12 12 C 1.34818 * 116.99897 * 185.36983 * 11 10 9 13 13 H 1.08000 * 119.99761 * 354.96153 * 12 11 10 14 14 C 1.38622 * 120.00138 * 174.96411 * 12 11 10 15 15 N 1.31580 * 120.00045 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00081 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46998 * 60.00293 * 16 14 12 18 18 H 1.48507 * 109.47170 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47290 * 299.99873 * 16 14 12 20 20 C 1.38912 * 120.00442 * 359.77238 * 10 9 8 21 21 C 1.37995 * 120.00485 * 359.96989 * 20 10 9 22 22 C 1.46692 * 106.11593 * 179.97438 * 3 2 1 23 23 C 1.34494 * 106.33219 * 0.02562 * 22 3 2 24 24 N 1.34674 * 125.80066 * 180.02562 * 2 1 3 25 25 C 1.46497 * 124.85464 * 359.73705 * 24 2 1 26 26 C 1.52991 * 109.47261 * 119.99651 * 25 24 2 27 27 C 1.53003 * 109.47053 * 240.00116 * 25 24 2 28 28 H 1.09000 * 109.47338 * 269.99674 * 1 2 3 29 29 H 1.09008 * 109.47248 * 29.99894 * 1 2 3 30 30 H 1.08999 * 109.47244 * 149.99855 * 1 2 3 31 31 H 0.96999 * 120.00410 * 355.50221 * 6 4 3 32 32 H 1.08002 * 119.99894 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.99541 * 180.23348 * 9 8 7 34 34 H 0.96997 * 119.99884 * 179.97438 * 15 14 12 35 35 H 1.07998 * 119.99676 * 179.97438 * 20 10 9 36 36 H 1.08002 * 120.00193 * 179.97438 * 21 20 10 37 37 H 1.07993 * 126.83543 * 180.02562 * 22 3 2 38 38 H 1.07994 * 125.56768 * 180.02562 * 23 22 3 39 39 H 1.09003 * 109.46579 * 359.97438 * 25 24 2 40 40 H 1.09011 * 109.46908 * 60.00327 * 26 25 24 41 41 H 1.09003 * 109.47118 * 179.97438 * 26 25 24 42 42 H 1.09002 * 109.47605 * 300.00180 * 26 25 24 43 43 H 1.08997 * 109.47185 * 179.97438 * 27 25 24 44 44 H 1.09006 * 109.46941 * 300.00084 * 27 25 24 45 45 H 1.08998 * 109.47330 * 59.99741 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8704 2.5155 -0.0005 5 8 0.6839 2.7839 -0.0006 6 7 2.7852 3.5052 0.0001 7 6 2.3730 4.8391 -0.0957 8 6 3.1501 5.7584 -0.7893 9 6 2.7408 7.0726 -0.8881 10 6 1.5572 7.4786 -0.2851 11 8 1.1572 8.7728 -0.3780 12 6 0.0598 9.1260 0.3210 13 1 -0.5053 8.3758 0.8543 14 6 -0.3433 10.4519 0.3553 15 7 0.3455 11.3659 -0.2940 16 14 -1.8642 10.9410 1.3233 17 1 -1.6763 10.5861 2.7531 18 1 -2.0788 12.4054 1.2014 19 1 -3.0461 10.2206 0.7856 20 6 0.7829 6.5608 0.4134 21 6 1.1893 5.2454 0.5078 22 6 3.6883 0.6152 0.0006 23 6 3.6096 -0.7275 0.0004 24 7 2.2948 -1.0923 -0.0005 25 6 1.8095 -2.4745 0.0044 26 6 2.3163 -3.1974 -1.2451 27 6 2.3257 -3.1919 1.2534 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 3.7294 3.2931 0.0667 32 1 4.0723 5.4435 -1.2550 33 1 3.3431 7.7864 -1.4305 34 1 0.0632 12.2935 -0.2703 35 1 -0.1371 6.8767 0.8825 36 1 0.5876 4.5320 1.0512 37 1 4.5891 1.2109 0.0012 38 1 4.4498 -1.4060 0.0011 39 1 0.7195 -2.4768 0.0089 40 1 3.4064 -3.1951 -1.2491 41 1 1.9556 -4.2260 -1.2412 42 1 1.9486 -2.6864 -2.1349 43 1 1.9643 -4.2202 1.2573 44 1 3.4158 -3.1894 1.2493 45 1 1.9646 -2.6768 2.1436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328232157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:27 Heat of formation + Delta-G solvation = 9.747079 kcal Electronic energy + Delta-G solvation = -26634.827403 eV Core-core repulsion = 22811.989775 eV Total energy + Delta-G solvation = -3822.837628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69197 -39.67429 -38.40960 -36.36631 -35.57567 -33.79107 -32.10740 -31.75144 -30.25694 -30.03906 -27.89449 -27.88338 -26.37419 -25.18580 -23.25969 -22.52791 -22.04557 -20.95338 -19.43247 -18.92515 -17.94860 -17.54293 -17.15124 -16.21809 -16.04537 -15.56591 -14.99825 -14.65066 -14.44952 -14.19973 -13.95454 -13.76492 -13.53009 -13.47793 -13.35684 -13.11828 -12.96743 -12.89641 -12.70955 -12.58541 -12.48773 -12.39274 -11.79734 -11.66573 -11.63421 -11.57061 -11.44012 -11.37867 -10.93092 -10.66284 -10.38556 -9.53256 -9.52312 -9.04107 -8.78873 -8.59484 -8.28193 -8.08726 -6.79696 -6.36456 -3.93816 1.67763 2.21358 2.30383 2.46320 2.52742 3.19945 3.20883 3.23420 3.66144 3.77013 4.04397 4.05085 4.35172 4.42077 4.54498 4.67769 4.72505 4.92469 5.01090 5.05259 5.11573 5.13600 5.18631 5.27300 5.36304 5.41040 5.46630 5.53311 5.56214 5.75879 5.79770 5.85193 5.89667 6.09228 6.26589 6.35045 6.48567 6.63629 6.86142 6.89560 7.01050 7.07106 7.16060 7.23784 7.41672 7.54631 7.88926 7.97741 8.09153 8.66340 9.09468 9.80252 10.81656 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027936 B = 0.002141 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.060528 B =13073.224236 C =13784.116825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.106 3.894 3 C -0.232 4.232 4 C 0.584 3.416 5 O -0.539 6.539 6 N -0.657 5.657 7 C 0.042 3.958 8 C -0.095 4.095 9 C -0.178 4.178 10 C 0.144 3.856 11 O -0.179 6.179 12 C -0.389 4.389 13 H 0.091 0.909 14 C 0.038 3.962 15 N -0.865 5.865 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.270 1.270 20 C -0.220 4.220 21 C -0.065 4.065 22 C -0.168 4.168 23 C -0.015 4.015 24 N -0.437 5.437 25 C 0.119 3.881 26 C -0.163 4.163 27 C -0.162 4.162 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.401 0.599 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.269 0.731 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 -29.935 1.290 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.010 4.010 3 C -0.241 4.241 4 C 0.374 3.626 5 O -0.418 6.418 6 N -0.300 5.300 7 C -0.051 4.051 8 C -0.116 4.116 9 C -0.198 4.198 10 C 0.091 3.909 11 O -0.083 6.083 12 C -0.465 4.465 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.500 5.500 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.195 1.195 20 C -0.240 4.240 21 C -0.085 4.085 22 C -0.193 4.193 23 C -0.141 4.141 24 N -0.115 5.115 25 C 0.018 3.982 26 C -0.220 4.220 27 C -0.220 4.220 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.235 0.765 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.162 0.838 38 H 0.179 0.821 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.245 -29.665 1.110 30.146 hybrid contribution -0.071 0.033 0.500 0.506 sum 5.173 -29.632 1.611 30.124 Atomic orbital electron populations 1.20588 0.87226 1.04081 1.03365 1.20301 0.93712 0.85105 1.01918 1.20102 0.93192 0.91843 1.19011 1.17370 0.85429 0.83869 0.75928 1.90730 1.16621 1.83975 1.50435 1.42970 1.09698 1.04322 1.73049 1.17273 0.98995 0.82864 1.05971 1.20367 0.99584 0.92648 0.98968 1.19975 0.97049 0.95618 1.07166 1.19404 0.92399 0.85755 0.93360 1.83973 1.42900 1.20314 1.61069 1.21275 1.02320 0.93718 1.29208 0.89133 1.25266 0.99252 0.94529 0.97540 1.70042 1.38488 1.01813 1.39704 0.85794 0.80262 0.77883 0.79572 1.19538 1.20367 1.19516 1.21108 1.02847 0.93018 1.07036 1.20878 0.95339 0.95096 0.97177 1.21994 0.95754 0.93528 1.07981 1.21495 0.85656 0.95907 1.11076 1.43829 1.05851 1.05452 1.56318 1.21513 1.00543 0.79263 0.96930 1.22172 1.02359 1.00719 0.96795 1.22167 1.02297 1.00752 0.96772 0.90543 0.87790 0.92184 0.76509 0.86809 0.86159 0.92095 0.85299 0.85610 0.83823 0.82059 0.88092 0.91616 0.90607 0.91618 0.90605 0.91617 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.34 36.00 0.34 -0.66 16 2 C 0.11 1.23 6.89 -81.88 -0.56 0.66 16 3 C -0.23 -3.08 6.29 -103.36 -0.65 -3.73 16 4 C 0.58 9.62 7.65 -12.60 -0.10 9.53 16 5 O -0.54 -10.50 12.25 5.24 0.06 -10.44 16 6 N -0.66 -10.27 5.33 -10.84 -0.06 -10.33 16 7 C 0.04 0.79 6.30 -83.64 -0.53 0.27 16 8 C -0.10 -1.77 9.96 -39.41 -0.39 -2.16 16 9 C -0.18 -3.88 9.98 -39.42 -0.39 -4.27 16 10 C 0.14 3.64 6.65 -39.09 -0.26 3.38 16 11 O -0.18 -5.25 9.76 -0.01 0.00 -5.25 16 12 C -0.39 -11.21 9.48 30.87 0.29 -10.92 16 13 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.87 -25.89 13.67 55.48 0.76 -25.14 16 16 Si 0.94 21.17 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 C -0.22 -5.19 9.16 -39.42 -0.36 -5.55 16 21 C -0.06 -1.38 8.69 -39.41 -0.34 -1.73 16 22 C -0.17 -1.73 10.56 -37.49 -0.40 -2.13 16 23 C -0.02 -0.13 10.17 -16.82 -0.17 -0.30 16 24 N -0.44 -3.82 2.57 -105.46 -0.27 -4.09 16 25 C 0.12 0.67 3.44 -67.93 -0.23 0.43 16 26 C -0.16 -0.71 9.23 37.15 0.34 -0.37 16 27 C -0.16 -0.70 9.22 37.16 0.34 -0.36 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 1.35 6.47 -51.92 -0.34 1.02 16 30 H 0.06 0.46 6.97 -51.93 -0.36 0.10 16 31 H 0.40 4.88 7.96 -40.82 -0.32 4.55 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.13 3.04 5.63 -52.49 -0.30 2.74 16 36 H 0.13 2.66 6.22 -52.49 -0.33 2.33 16 37 H 0.14 1.17 7.70 -52.49 -0.40 0.77 16 38 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.10 0.51 6.48 -51.93 -0.34 0.17 16 40 H 0.06 0.28 7.89 -51.92 -0.41 -0.13 16 41 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.06 0.27 7.88 -51.93 -0.41 -0.13 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -34.82 374.52 -8.05 -42.87 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.99 Total: 7.52 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -3.17 Total: -16.93 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.43 Total: -39.56 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.06 Total: -15.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.82 -8.05 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328232157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.618 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds