Wall clock time and date at job start Tue Mar 31 2020 15:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36779 * 125.80249 * 2 1 4 4 C 1.47239 * 126.94571 * 359.97438 * 3 2 1 5 5 O 1.21647 * 119.99770 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00327 * 179.97438 * 4 3 2 7 7 C 1.39935 * 120.00102 * 175.49280 * 6 4 3 8 8 C 1.38936 * 120.00600 * 214.86409 * 7 6 4 9 9 C 1.38002 * 119.99721 * 179.74547 * 8 7 6 10 10 C 1.38903 * 120.00355 * 0.50699 * 9 8 7 11 11 O 1.35779 * 119.99607 * 179.74619 * 10 9 8 12 12 C 1.34818 * 116.99897 * 185.36983 * 11 10 9 13 13 H 1.08000 * 119.99761 * 354.96153 * 12 11 10 14 14 C 1.38622 * 120.00138 * 174.96411 * 12 11 10 15 15 N 1.31580 * 120.00045 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00081 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46998 * 60.00293 * 16 14 12 18 18 H 1.48507 * 109.47170 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47290 * 299.99873 * 16 14 12 20 20 C 1.38912 * 120.00442 * 359.77238 * 10 9 8 21 21 C 1.37995 * 120.00485 * 359.96989 * 20 10 9 22 22 C 1.46692 * 106.11593 * 179.97438 * 3 2 1 23 23 C 1.34494 * 106.33219 * 0.02562 * 22 3 2 24 24 N 1.34674 * 125.80066 * 180.02562 * 2 1 3 25 25 C 1.46497 * 124.85464 * 359.73705 * 24 2 1 26 26 C 1.52991 * 109.47261 * 119.99651 * 25 24 2 27 27 C 1.53003 * 109.47053 * 240.00116 * 25 24 2 28 28 H 1.09000 * 109.47338 * 269.99674 * 1 2 3 29 29 H 1.09008 * 109.47248 * 29.99894 * 1 2 3 30 30 H 1.08999 * 109.47244 * 149.99855 * 1 2 3 31 31 H 0.96999 * 120.00410 * 355.50221 * 6 4 3 32 32 H 1.08002 * 119.99894 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.99541 * 180.23348 * 9 8 7 34 34 H 0.96997 * 119.99884 * 179.97438 * 15 14 12 35 35 H 1.07998 * 119.99676 * 179.97438 * 20 10 9 36 36 H 1.08002 * 120.00193 * 179.97438 * 21 20 10 37 37 H 1.07993 * 126.83543 * 180.02562 * 22 3 2 38 38 H 1.07994 * 125.56768 * 180.02562 * 23 22 3 39 39 H 1.09003 * 109.46579 * 359.97438 * 25 24 2 40 40 H 1.09011 * 109.46908 * 60.00327 * 26 25 24 41 41 H 1.09003 * 109.47118 * 179.97438 * 26 25 24 42 42 H 1.09002 * 109.47605 * 300.00180 * 26 25 24 43 43 H 1.08997 * 109.47185 * 179.97438 * 27 25 24 44 44 H 1.09006 * 109.46941 * 300.00084 * 27 25 24 45 45 H 1.08998 * 109.47330 * 59.99741 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8704 2.5155 -0.0005 5 8 0.6839 2.7839 -0.0006 6 7 2.7852 3.5052 0.0001 7 6 2.3730 4.8391 -0.0957 8 6 3.1501 5.7584 -0.7893 9 6 2.7408 7.0726 -0.8881 10 6 1.5572 7.4786 -0.2851 11 8 1.1572 8.7728 -0.3780 12 6 0.0598 9.1260 0.3210 13 1 -0.5053 8.3758 0.8543 14 6 -0.3433 10.4519 0.3553 15 7 0.3455 11.3659 -0.2940 16 14 -1.8642 10.9410 1.3233 17 1 -1.6763 10.5861 2.7531 18 1 -2.0788 12.4054 1.2014 19 1 -3.0461 10.2206 0.7856 20 6 0.7829 6.5608 0.4134 21 6 1.1893 5.2454 0.5078 22 6 3.6883 0.6152 0.0006 23 6 3.6096 -0.7275 0.0004 24 7 2.2948 -1.0923 -0.0005 25 6 1.8095 -2.4745 0.0044 26 6 2.3163 -3.1974 -1.2451 27 6 2.3257 -3.1919 1.2534 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 3.7294 3.2931 0.0667 32 1 4.0723 5.4435 -1.2550 33 1 3.3431 7.7864 -1.4305 34 1 0.0632 12.2935 -0.2703 35 1 -0.1371 6.8767 0.8825 36 1 0.5876 4.5320 1.0512 37 1 4.5891 1.2109 0.0012 38 1 4.4498 -1.4060 0.0011 39 1 0.7195 -2.4768 0.0089 40 1 3.4064 -3.1951 -1.2491 41 1 1.9556 -4.2260 -1.2412 42 1 1.9486 -2.6864 -2.1349 43 1 1.9643 -4.2202 1.2573 44 1 3.4158 -3.1894 1.2493 45 1 1.9646 -2.6768 2.1436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328232157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:26 Heat of formation + Delta-G solvation = -11.509106 kcal Electronic energy + Delta-G solvation = -26635.749140 eV Core-core repulsion = 22811.989775 eV Total energy + Delta-G solvation = -3823.759365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.47025 -41.19584 -40.10751 -38.05918 -36.14555 -35.32166 -34.14626 -32.57341 -31.84833 -31.07438 -29.38534 -28.18994 -27.50077 -27.03022 -24.41630 -23.78267 -23.14606 -22.45177 -20.68681 -19.95048 -19.57389 -19.00136 -18.22910 -17.81131 -17.13516 -16.51337 -16.28470 -16.07415 -15.73878 -15.48078 -15.33537 -15.26039 -14.96415 -14.60381 -14.44004 -14.15361 -14.03692 -13.97489 -13.61466 -13.54938 -13.38855 -13.21481 -13.16660 -13.03978 -12.94516 -12.67824 -12.44975 -12.41161 -12.20189 -12.13980 -11.95930 -11.38741 -11.08153 -10.74182 -10.46429 -9.81628 -9.56530 -9.11464 -8.54519 -8.45232 -6.12032 0.44958 0.55899 0.90057 1.35146 1.45567 1.51121 1.55865 1.80894 2.19139 2.42381 2.54743 2.86623 3.17393 3.53130 3.63846 3.78310 3.96488 3.97826 4.05731 4.11701 4.14530 4.22130 4.36156 4.50267 4.54901 4.65622 4.67854 4.69362 4.78277 4.81599 4.82887 4.86761 4.98399 5.06007 5.09900 5.15314 5.23796 5.24672 5.30053 5.38255 5.50105 5.64929 5.71918 5.82301 6.03599 6.14779 6.20926 6.40151 6.70167 6.98983 7.37984 7.78715 8.77181 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027936 B = 0.002141 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.060528 B =13073.224236 C =13784.116825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.098 3.902 3 C -0.267 4.267 4 C 0.580 3.420 5 O -0.577 6.577 6 N -0.648 5.648 7 C 0.066 3.934 8 C -0.080 4.080 9 C -0.179 4.179 10 C 0.105 3.895 11 O -0.227 6.227 12 C -0.414 4.414 13 H 0.096 0.904 14 C -0.022 4.022 15 N -0.918 5.918 16 Si 1.017 2.983 17 H -0.259 1.259 18 H -0.268 1.268 19 H -0.260 1.260 20 C -0.228 4.228 21 C -0.077 4.077 22 C -0.179 4.179 23 C -0.004 4.004 24 N -0.429 5.429 25 C 0.112 3.888 26 C -0.158 4.158 27 C -0.158 4.158 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.421 0.579 32 H 0.165 0.835 33 H 0.130 0.870 34 H 0.273 0.727 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.164 0.836 38 H 0.197 0.803 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 -34.019 1.613 34.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.021 4.021 3 C -0.277 4.277 4 C 0.372 3.628 5 O -0.458 6.458 6 N -0.293 5.293 7 C -0.028 4.028 8 C -0.100 4.100 9 C -0.198 4.198 10 C 0.055 3.945 11 O -0.134 6.134 12 C -0.490 4.490 13 H 0.114 0.886 14 C -0.219 4.219 15 N -0.556 5.556 16 Si 0.836 3.164 17 H -0.183 1.183 18 H -0.192 1.192 19 H -0.185 1.185 20 C -0.247 4.247 21 C -0.097 4.097 22 C -0.203 4.203 23 C -0.130 4.130 24 N -0.106 5.106 25 C 0.011 3.989 26 C -0.216 4.216 27 C -0.215 4.215 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.259 0.741 32 H 0.182 0.818 33 H 0.148 0.852 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.181 0.819 38 H 0.214 0.786 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.798 -33.846 1.435 34.552 hybrid contribution -0.376 0.857 0.360 1.003 sum 6.422 -32.989 1.795 33.656 Atomic orbital electron populations 1.20516 0.87125 1.03905 1.03432 1.20421 0.94163 0.85857 1.01612 1.20007 0.95394 0.90231 1.22038 1.17947 0.84882 0.85244 0.74687 1.90716 1.18328 1.84712 1.52091 1.42905 1.10926 1.02618 1.72861 1.17438 0.97505 0.84614 1.03221 1.20773 1.00810 0.90850 0.97572 1.20307 0.95904 0.97278 1.06343 1.19912 0.94247 0.85015 0.95363 1.83936 1.43934 1.22391 1.63118 1.21724 1.02891 0.94559 1.29828 0.88631 1.26539 1.02819 0.94032 0.98522 1.70177 1.41003 1.02310 1.42126 0.84683 0.75697 0.77874 0.78169 1.18291 1.19248 1.18470 1.21097 1.02568 0.93881 1.07202 1.20934 0.96680 0.94042 0.98024 1.22263 0.94942 0.94532 1.08520 1.22055 0.86269 0.95934 1.08714 1.44108 1.05798 1.06050 1.54596 1.21837 1.01051 0.77666 0.98346 1.22157 1.02693 1.01462 0.95272 1.22151 1.02632 1.01488 0.95250 0.90346 0.90817 0.89456 0.74071 0.81798 0.85249 0.91803 0.86492 0.85709 0.81869 0.78602 0.87685 0.91041 0.88553 0.92983 0.88563 0.91030 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 9.34 71.23 0.67 -1.22 16 2 C 0.10 2.13 6.89 41.78 0.29 2.42 16 3 C -0.27 -6.71 6.29 -19.04 -0.12 -6.83 16 4 C 0.58 18.71 7.65 86.61 0.66 19.38 16 5 O -0.58 -22.91 12.25 -4.18 -0.05 -22.96 16 6 N -0.65 -19.01 5.33 -306.45 -1.63 -20.65 16 7 C 0.07 2.44 6.30 38.18 0.24 2.68 16 8 C -0.08 -2.80 9.96 22.38 0.22 -2.58 16 9 C -0.18 -7.78 9.98 22.37 0.22 -7.55 16 10 C 0.11 5.54 6.65 22.59 0.15 5.69 16 11 O -0.23 -14.15 9.76 -22.94 -0.22 -14.38 16 12 C -0.41 -25.20 9.48 67.91 0.64 -24.55 16 13 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 14 C -0.02 -1.27 5.49 84.82 0.47 -0.80 16 15 N -0.92 -57.52 13.67 21.61 0.30 -57.22 16 16 Si 1.02 44.71 29.55 68.60 2.03 46.74 16 17 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 20 C -0.23 -11.22 9.16 22.37 0.20 -11.02 16 21 C -0.08 -3.33 8.69 22.38 0.19 -3.13 16 22 C -0.18 -3.14 10.56 23.62 0.25 -2.89 16 23 C 0.00 -0.05 10.17 83.12 0.85 0.80 16 24 N -0.43 -6.28 2.57 -487.57 -1.25 -7.53 16 25 C 0.11 0.88 3.44 44.99 0.15 1.04 16 26 C -0.16 -0.82 9.23 71.98 0.66 -0.15 16 27 C -0.16 -0.80 9.22 71.98 0.66 -0.14 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.99 6.47 -2.38 -0.02 1.97 16 30 H 0.09 1.22 6.97 -2.39 -0.02 1.20 16 31 H 0.42 8.92 7.96 -92.71 -0.74 8.18 16 32 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.13 5.33 8.06 -2.91 -0.02 5.31 16 34 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.12 5.90 5.63 -2.91 -0.02 5.89 16 36 H 0.13 5.44 6.22 -2.91 -0.02 5.42 16 37 H 0.16 2.05 7.70 -2.91 -0.02 2.02 16 38 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.11 0.75 6.48 -2.39 -0.02 0.73 16 40 H 0.07 0.31 7.89 -2.38 -0.02 0.29 16 41 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.07 0.30 7.88 -2.38 -0.02 0.28 16 45 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -82.01 374.52 5.87 -76.14 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.29 Total: 28.74 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 6.42 Total: -28.88 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -2.59 Total: -85.40 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.28 Total: -37.34 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -82.01 5.87 -76.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328232157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.631 kcal (2) G-P(sol) polarization free energy of solvation -82.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds