Wall clock time and date at job start Tue Mar 31 2020 15:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39900 * 109.44879 * 2 1 4 4 C 1.53037 * 109.46293 * 119.97273 * 2 1 3 5 5 C 1.53194 * 109.31034 * 181.38576 * 4 2 1 6 6 N 1.46924 * 108.77456 * 305.35951 * 5 4 2 7 7 C 1.34783 * 120.62998 * 233.58364 * 6 5 4 8 8 O 1.21347 * 119.99664 * 8.64627 * 7 6 5 9 9 C 1.49448 * 119.99699 * 188.63924 * 7 6 5 10 10 O 1.21343 * 120.00123 * 6.68499 * 9 7 6 11 11 N 1.34774 * 119.99660 * 186.40413 * 9 7 6 12 12 C 1.47425 * 125.65005 * 0.30465 * 11 9 7 13 13 C 1.54909 * 104.83440 * 204.09073 * 12 11 9 14 14 C 1.55162 * 101.57955 * 322.98978 * 13 12 11 15 15 O 1.42893 * 110.72099 * 277.13626 * 14 13 12 16 16 C 1.50704 * 110.71609 * 154.04070 * 14 13 12 17 17 H 1.07989 * 120.00636 * 0.02562 * 16 14 13 18 18 C 1.37877 * 119.99524 * 179.97438 * 16 14 13 19 19 N 1.31522 * 120.00137 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00114 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47093 * 59.99777 * 20 18 16 22 22 H 1.48498 * 109.47337 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46912 * 300.00056 * 20 18 16 24 24 C 1.47023 * 125.64659 * 179.97438 * 11 9 7 25 25 C 1.46928 * 118.73845 * 53.86615 * 6 5 4 26 26 C 1.53049 * 109.45782 * 240.03693 * 2 1 3 27 27 H 1.09000 * 109.47203 * 300.02812 * 1 2 3 28 28 H 1.08992 * 109.47494 * 60.02944 * 1 2 3 29 29 H 1.09005 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.50125 * 61.43234 * 4 2 1 31 31 H 1.08997 * 109.52316 * 301.35068 * 4 2 1 32 32 H 1.08999 * 109.58537 * 185.57559 * 5 4 2 33 33 H 1.08997 * 109.59050 * 65.15072 * 5 4 2 34 34 H 1.08999 * 110.36443 * 322.92642 * 12 11 9 35 35 H 1.08998 * 110.36716 * 85.13967 * 12 11 9 36 36 H 1.09004 * 111.00680 * 81.06032 * 13 12 11 37 37 H 1.08996 * 111.00836 * 204.91399 * 13 12 11 38 38 H 0.96700 * 114.00545 * 180.02562 * 15 14 13 39 39 H 0.96997 * 119.99625 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.88676 * 298.39788 * 24 11 9 41 41 H 1.09002 * 109.88236 * 59.56507 * 24 11 9 42 42 H 1.08994 * 109.58559 * 65.91973 * 25 6 5 43 43 H 1.08997 * 109.58329 * 186.35192 * 25 6 5 44 44 H 1.08995 * 109.49766 * 298.56882 * 26 2 1 45 45 H 1.09007 * 109.49369 * 58.66235 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9958 1.3192 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5714 -0.6886 1.2640 6 7 4.0678 -1.2488 -0.0003 7 6 4.9622 -2.2572 -0.0004 8 8 5.2468 -2.8157 1.0386 9 6 5.6031 -2.6873 -1.2801 10 8 5.4125 -2.0535 -2.2971 11 7 6.3973 -3.7759 -1.3033 12 6 6.7129 -4.6341 -0.1469 13 6 8.0634 -5.3026 -0.5059 14 6 7.8983 -5.5391 -2.0305 15 8 7.1669 -6.7412 -2.2793 16 6 9.2419 -5.5840 -2.7116 17 1 10.1451 -5.4586 -2.1331 18 6 9.3179 -5.7862 -4.0733 19 7 8.2180 -5.9404 -4.7777 20 14 10.9833 -5.8426 -4.9176 21 1 11.7914 -6.9491 -4.3449 22 1 10.7932 -6.0709 -6.3726 23 1 11.6892 -4.5533 -4.7064 24 6 7.0870 -4.3083 -2.4876 25 6 3.5755 -0.6847 -1.2645 26 6 2.0398 -0.7207 -1.2502 27 1 -0.3633 0.5143 0.8897 28 1 -0.3634 0.5133 -0.8902 29 1 -0.3633 -1.0277 0.0005 30 1 1.6979 -1.7557 1.2381 31 1 1.6573 -0.2214 2.1400 32 1 3.9418 -1.2846 2.0981 33 1 3.9144 0.3409 1.3672 34 1 6.8160 -4.0316 0.7556 35 1 5.9382 -5.3888 -0.0119 36 1 8.8979 -4.6313 -0.3028 37 1 8.1855 -6.2467 0.0250 38 1 7.0365 -6.9352 -3.2176 39 1 8.2716 -6.0830 -5.7356 40 1 6.3564 -4.6023 -3.2412 41 1 7.7599 -3.5538 -2.8951 42 1 3.9187 0.3451 -1.3633 43 1 3.9486 -1.2781 -2.0992 44 1 1.6977 -1.7555 -1.2385 45 1 1.6571 -0.2206 -2.1399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332074707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:01 Heat of formation + Delta-G solvation = -149.825471 kcal Electronic energy + Delta-G solvation = -29530.181501 eV Core-core repulsion = 25269.655064 eV Total energy + Delta-G solvation = -4260.526438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.90599 -40.69875 -38.78544 -37.44687 -37.17898 -34.49844 -33.57293 -32.21040 -31.47995 -30.22054 -28.90478 -27.98366 -26.03053 -24.50118 -23.76237 -22.91313 -21.70396 -20.35357 -19.61339 -18.96025 -17.26618 -17.07201 -16.76467 -16.07345 -15.83163 -15.75432 -15.51509 -15.33722 -15.16726 -14.65474 -14.46775 -14.31519 -13.60405 -13.21562 -13.10641 -13.01839 -12.98265 -12.82138 -12.63531 -12.43003 -12.40889 -12.17490 -12.02285 -11.78296 -11.55173 -11.49780 -11.13097 -11.09937 -10.88735 -10.68778 -10.64125 -10.55084 -10.33944 -10.14680 -9.35703 -8.91627 -8.82374 -8.68107 -8.38054 -8.06149 -6.34352 -4.42904 1.69112 2.48703 3.20189 3.25663 3.27951 3.46748 3.66325 4.14417 4.21529 4.23463 4.36499 4.38934 4.48385 4.76122 4.93599 4.97909 5.09858 5.20264 5.21292 5.37078 5.46341 5.48841 5.57218 5.62371 5.69026 5.77400 5.80567 5.85168 5.91258 6.01494 6.09358 6.23633 6.37164 6.47773 6.73487 6.77136 6.81616 7.10029 7.16487 7.28251 7.68506 7.74748 7.96122 7.99295 8.35825 8.60674 9.26212 9.39211 10.73436 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.002909 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.927672 B = 9622.507821 C =10074.373049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 F -0.208 7.208 4 C -0.151 4.151 5 C 0.107 3.893 6 N -0.588 5.588 7 C 0.514 3.486 8 O -0.519 6.519 9 C 0.508 3.492 10 O -0.529 6.529 11 N -0.570 5.570 12 C 0.095 3.905 13 C -0.120 4.120 14 C 0.249 3.751 15 O -0.585 6.585 16 C -0.537 4.537 17 H 0.068 0.932 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.097 3.903 25 C 0.068 3.932 26 C -0.154 4.154 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.386 0.614 39 H 0.272 0.728 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.151 0.849 44 H 0.084 0.916 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.360 9.714 9.024 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.096 3.904 3 F -0.188 7.188 4 C -0.190 4.190 5 C -0.015 4.015 6 N -0.323 5.323 7 C 0.298 3.702 8 O -0.394 6.394 9 C 0.291 3.709 10 O -0.410 6.410 11 N -0.301 5.301 12 C -0.028 4.028 13 C -0.158 4.158 14 C 0.208 3.792 15 O -0.395 6.395 16 C -0.575 4.575 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.536 5.536 20 Si 0.733 3.267 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.024 4.024 25 C -0.053 4.053 26 C -0.192 4.192 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.167 0.833 44 H 0.102 0.898 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.387 9.749 9.510 19.097 hybrid contribution 0.677 0.276 -1.173 1.382 sum -12.710 10.025 8.337 18.208 Atomic orbital electron populations 1.22361 0.93473 1.03608 1.03438 1.20940 0.94427 0.78123 0.96901 1.92842 1.90358 1.37948 1.97677 1.22492 0.96434 1.02282 0.97758 1.21643 0.93034 0.99693 0.87110 1.47938 1.41924 1.34354 1.08057 1.20350 0.79975 0.80023 0.89868 1.90672 1.61443 1.53439 1.33865 1.19578 0.81256 0.81614 0.88494 1.90428 1.61447 1.53994 1.35164 1.48723 1.43405 1.24070 1.13915 1.22714 0.97855 0.93446 0.88741 1.22825 0.95111 1.00227 0.97679 1.19496 0.89029 0.80835 0.89822 1.86093 1.77426 1.43618 1.32358 1.21497 0.92247 1.50873 0.92904 0.91388 1.25086 0.97513 0.93387 0.97290 1.69559 1.27313 1.48655 1.08120 0.86421 0.83269 0.78844 0.78163 1.19936 1.21043 1.19986 1.23307 0.95425 0.98216 0.85465 1.22982 0.92398 1.01897 0.88053 1.22638 0.97236 1.01926 0.97405 0.91418 0.91254 0.90647 0.89542 0.89496 0.88247 0.90628 0.89091 0.91402 0.90473 0.90245 0.76206 0.91788 0.91085 0.90884 0.90931 0.83257 0.89762 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 8.93 37.16 0.33 -0.85 16 2 C 0.11 1.05 1.23 -90.58 -0.11 0.94 16 3 F -0.21 -2.33 15.84 2.25 0.04 -2.29 16 4 C -0.15 -1.33 5.16 -26.61 -0.14 -1.46 16 5 C 0.11 1.19 6.24 -3.71 -0.02 1.17 16 6 N -0.59 -8.15 2.97 -173.01 -0.51 -8.66 16 7 C 0.51 8.67 7.69 -11.58 -0.09 8.58 16 8 O -0.52 -9.23 13.19 5.50 0.07 -9.16 16 9 C 0.51 9.85 7.77 -11.59 -0.09 9.76 16 10 O -0.53 -10.80 13.50 5.50 0.07 -10.72 16 11 N -0.57 -11.78 3.33 -171.02 -0.57 -12.35 16 12 C 0.09 1.80 6.17 -2.53 -0.02 1.79 16 13 C -0.12 -2.44 6.23 -24.58 -0.15 -2.60 16 14 C 0.25 5.93 0.86 -89.92 -0.08 5.85 16 15 O -0.58 -14.56 13.07 -35.23 -0.46 -15.03 16 16 C -0.54 -13.76 8.12 -34.44 -0.28 -14.04 16 17 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 18 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 19 N -0.90 -23.20 10.97 55.43 0.61 -22.59 16 20 Si 0.91 20.06 29.54 -169.99 -5.02 15.04 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.10 2.26 5.54 -3.06 -0.02 2.25 16 25 C 0.07 0.88 5.81 -3.49 -0.02 0.86 16 26 C -0.15 -1.53 5.18 -26.38 -0.14 -1.67 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.14 7.01 -51.93 -0.36 0.78 16 33 H 0.08 0.81 7.92 -51.93 -0.41 0.39 16 34 H 0.09 1.64 5.99 -51.93 -0.31 1.33 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.39 9.84 6.98 45.56 0.32 10.15 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.07 1.78 8.07 -51.93 -0.42 1.36 16 41 H 0.07 1.83 7.82 -51.93 -0.41 1.42 16 42 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 43 H 0.15 2.29 4.30 -54.88 -0.24 2.05 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -27.89 357.30 -7.30 -35.19 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.00 Total: 12.91 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -0.91 Total: 12.27 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.47 Total: -43.60 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.31 Total: -34.91 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.89 -7.30 -35.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332074707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.631 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds