Wall clock time and date at job start Tue Mar 31 2020 15:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39900 * 109.44879 * 2 1 4 4 C 1.53037 * 109.46293 * 119.97273 * 2 1 3 5 5 C 1.53194 * 109.31034 * 181.38576 * 4 2 1 6 6 N 1.46924 * 108.77456 * 305.35951 * 5 4 2 7 7 C 1.34783 * 120.62998 * 233.58364 * 6 5 4 8 8 O 1.21347 * 119.99664 * 8.64627 * 7 6 5 9 9 C 1.49448 * 119.99699 * 188.63924 * 7 6 5 10 10 O 1.21343 * 120.00123 * 6.68499 * 9 7 6 11 11 N 1.34774 * 119.99660 * 186.40413 * 9 7 6 12 12 C 1.47425 * 125.65005 * 0.30465 * 11 9 7 13 13 C 1.54909 * 104.83440 * 204.09073 * 12 11 9 14 14 C 1.55162 * 101.57955 * 322.98978 * 13 12 11 15 15 O 1.42893 * 110.72099 * 277.13626 * 14 13 12 16 16 C 1.50704 * 110.71609 * 154.04070 * 14 13 12 17 17 H 1.07989 * 120.00636 * 0.02562 * 16 14 13 18 18 C 1.37877 * 119.99524 * 179.97438 * 16 14 13 19 19 N 1.31522 * 120.00137 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00114 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47093 * 59.99777 * 20 18 16 22 22 H 1.48498 * 109.47337 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46912 * 300.00056 * 20 18 16 24 24 C 1.47023 * 125.64659 * 179.97438 * 11 9 7 25 25 C 1.46928 * 118.73845 * 53.86615 * 6 5 4 26 26 C 1.53049 * 109.45782 * 240.03693 * 2 1 3 27 27 H 1.09000 * 109.47203 * 300.02812 * 1 2 3 28 28 H 1.08992 * 109.47494 * 60.02944 * 1 2 3 29 29 H 1.09005 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.50125 * 61.43234 * 4 2 1 31 31 H 1.08997 * 109.52316 * 301.35068 * 4 2 1 32 32 H 1.08999 * 109.58537 * 185.57559 * 5 4 2 33 33 H 1.08997 * 109.59050 * 65.15072 * 5 4 2 34 34 H 1.08999 * 110.36443 * 322.92642 * 12 11 9 35 35 H 1.08998 * 110.36716 * 85.13967 * 12 11 9 36 36 H 1.09004 * 111.00680 * 81.06032 * 13 12 11 37 37 H 1.08996 * 111.00836 * 204.91399 * 13 12 11 38 38 H 0.96700 * 114.00545 * 180.02562 * 15 14 13 39 39 H 0.96997 * 119.99625 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.88676 * 298.39788 * 24 11 9 41 41 H 1.09002 * 109.88236 * 59.56507 * 24 11 9 42 42 H 1.08994 * 109.58559 * 65.91973 * 25 6 5 43 43 H 1.08997 * 109.58329 * 186.35192 * 25 6 5 44 44 H 1.08995 * 109.49766 * 298.56882 * 26 2 1 45 45 H 1.09007 * 109.49369 * 58.66235 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9958 1.3192 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5714 -0.6886 1.2640 6 7 4.0678 -1.2488 -0.0003 7 6 4.9622 -2.2572 -0.0004 8 8 5.2468 -2.8157 1.0386 9 6 5.6031 -2.6873 -1.2801 10 8 5.4125 -2.0535 -2.2971 11 7 6.3973 -3.7759 -1.3033 12 6 6.7129 -4.6341 -0.1469 13 6 8.0634 -5.3026 -0.5059 14 6 7.8983 -5.5391 -2.0305 15 8 7.1669 -6.7412 -2.2793 16 6 9.2419 -5.5840 -2.7116 17 1 10.1451 -5.4586 -2.1331 18 6 9.3179 -5.7862 -4.0733 19 7 8.2180 -5.9404 -4.7777 20 14 10.9833 -5.8426 -4.9176 21 1 11.7914 -6.9491 -4.3449 22 1 10.7932 -6.0709 -6.3726 23 1 11.6892 -4.5533 -4.7064 24 6 7.0870 -4.3083 -2.4876 25 6 3.5755 -0.6847 -1.2645 26 6 2.0398 -0.7207 -1.2502 27 1 -0.3633 0.5143 0.8897 28 1 -0.3634 0.5133 -0.8902 29 1 -0.3633 -1.0277 0.0005 30 1 1.6979 -1.7557 1.2381 31 1 1.6573 -0.2214 2.1400 32 1 3.9418 -1.2846 2.0981 33 1 3.9144 0.3409 1.3672 34 1 6.8160 -4.0316 0.7556 35 1 5.9382 -5.3888 -0.0119 36 1 8.8979 -4.6313 -0.3028 37 1 8.1855 -6.2467 0.0250 38 1 7.0365 -6.9352 -3.2176 39 1 8.2716 -6.0830 -5.7356 40 1 6.3564 -4.6023 -3.2412 41 1 7.7599 -3.5538 -2.8951 42 1 3.9187 0.3451 -1.3633 43 1 3.9486 -1.2781 -2.0992 44 1 1.6977 -1.7555 -1.2385 45 1 1.6571 -0.2206 -2.1399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332074707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:01 Heat of formation + Delta-G solvation = -168.247792 kcal Electronic energy + Delta-G solvation = -29530.980353 eV Core-core repulsion = 25269.655064 eV Total energy + Delta-G solvation = -4261.325290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.69304 -42.09620 -40.26557 -39.03018 -38.37143 -36.20685 -34.56322 -34.18137 -32.36574 -31.92479 -29.84408 -29.68161 -27.69239 -25.88865 -24.72542 -24.25633 -22.95708 -21.54535 -21.26542 -20.20782 -19.17828 -18.35722 -18.21992 -17.44786 -17.25157 -16.90009 -16.60312 -16.48430 -16.28178 -16.16908 -15.78754 -15.58957 -14.96953 -14.84621 -14.75382 -14.44944 -14.15647 -13.87293 -13.77810 -13.64208 -13.51621 -13.37020 -13.01066 -12.91761 -12.88713 -12.84873 -12.61954 -12.42788 -12.34002 -12.31702 -12.28316 -12.05405 -11.52493 -11.37106 -11.15599 -10.65631 -10.41091 -10.23033 -9.94603 -9.70655 -8.28353 -6.43999 0.25080 1.15439 1.44228 1.44833 1.52628 2.01392 2.27818 2.39159 2.97182 3.04604 3.43457 3.48718 3.64457 3.69665 3.78284 3.89704 4.04526 4.13648 4.18335 4.20130 4.33736 4.52854 4.55714 4.57825 4.58811 4.69884 4.72872 4.83112 4.87432 4.91761 4.94689 4.96075 5.07311 5.10689 5.20546 5.29315 5.30995 5.33916 5.44834 5.72942 5.88543 6.00706 6.27795 6.53186 6.64027 6.84074 7.27840 7.38105 8.77930 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.002909 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.927672 B = 9622.507821 C =10074.373049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 F -0.220 7.220 4 C -0.146 4.146 5 C 0.103 3.897 6 N -0.578 5.578 7 C 0.518 3.482 8 O -0.529 6.529 9 C 0.502 3.498 10 O -0.544 6.544 11 N -0.580 5.580 12 C 0.105 3.895 13 C -0.115 4.115 14 C 0.235 3.765 15 O -0.589 6.589 16 C -0.558 4.558 17 H 0.068 0.932 18 C 0.028 3.972 19 N -0.915 5.915 20 Si 0.965 3.035 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.115 3.885 25 C 0.066 3.934 26 C -0.150 4.150 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.380 0.620 39 H 0.273 0.727 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.418 10.515 10.408 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.093 3.907 3 F -0.201 7.201 4 C -0.184 4.184 5 C -0.018 4.018 6 N -0.311 5.311 7 C 0.301 3.699 8 O -0.407 6.407 9 C 0.286 3.714 10 O -0.426 6.426 11 N -0.312 5.312 12 C -0.016 4.016 13 C -0.152 4.152 14 C 0.194 3.806 15 O -0.398 6.398 16 C -0.596 4.596 17 H 0.086 0.914 18 C -0.173 4.173 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.007 4.007 25 C -0.055 4.055 26 C -0.188 4.188 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.143 0.857 44 H 0.107 0.893 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.479 10.583 10.917 20.996 hybrid contribution 0.952 0.110 -1.631 1.892 sum -13.527 10.693 9.286 19.584 Atomic orbital electron populations 1.22336 0.91312 1.04655 1.04127 1.21087 0.96028 0.77276 0.96302 1.92823 1.90674 1.38893 1.97684 1.22503 0.94245 1.02975 0.98664 1.21897 0.94921 0.99673 0.85342 1.48033 1.40453 1.32999 1.09623 1.19777 0.80741 0.81083 0.88345 1.90658 1.62281 1.54257 1.33481 1.20214 0.80693 0.80874 0.89574 1.90453 1.61624 1.54250 1.36228 1.48745 1.44031 1.25004 1.13379 1.22698 0.97084 0.93335 0.88534 1.22823 0.96157 1.01130 0.95139 1.19691 0.88383 0.80361 0.92122 1.86082 1.77647 1.44283 1.31829 1.21792 0.93032 1.51302 0.93520 0.91393 1.25793 1.00541 0.93066 0.97877 1.69651 1.28763 1.48848 1.08219 0.85502 0.79579 0.78778 0.77156 1.19465 1.20785 1.19821 1.22816 0.94375 0.97542 0.86007 1.22894 0.94715 1.01045 0.86844 1.22625 0.94603 1.02724 0.98837 0.90399 0.90997 0.89433 0.88963 0.87067 0.88364 0.89939 0.87574 0.91255 0.89726 0.89086 0.76923 0.91769 0.93640 0.93371 0.90907 0.85737 0.89250 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 8.93 71.98 0.64 -1.12 16 2 C 0.11 1.74 1.23 -10.77 -0.01 1.72 16 3 F -0.22 -4.43 15.84 44.97 0.71 -3.72 16 4 C -0.15 -2.11 5.16 30.67 0.16 -1.96 16 5 C 0.10 2.07 6.24 86.36 0.54 2.60 16 6 N -0.58 -15.34 2.97 -819.65 -2.43 -17.77 16 7 C 0.52 17.13 7.69 87.27 0.67 17.80 16 8 O -0.53 -18.20 13.19 -3.24 -0.04 -18.24 16 9 C 0.50 19.72 7.77 87.27 0.68 20.40 16 10 O -0.54 -22.82 13.50 -3.22 -0.04 -22.86 16 11 N -0.58 -24.30 3.33 -813.35 -2.70 -27.01 16 12 C 0.10 3.94 6.17 86.85 0.54 4.48 16 13 C -0.11 -4.60 6.23 31.99 0.20 -4.40 16 14 C 0.23 11.37 0.86 -10.34 -0.01 11.36 16 15 O -0.59 -29.85 13.07 -148.98 -1.95 -31.80 16 16 C -0.56 -28.93 8.12 25.60 0.21 -28.72 16 17 H 0.07 3.43 7.76 -2.92 -0.02 3.41 16 18 C 0.03 1.45 5.28 84.65 0.45 1.89 16 19 N -0.92 -48.29 10.97 21.45 0.24 -48.06 16 20 Si 0.96 41.26 29.54 68.60 2.03 43.28 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 C 0.12 5.56 5.54 86.73 0.48 6.04 16 25 C 0.07 1.66 5.81 86.51 0.50 2.17 16 26 C -0.15 -2.72 5.18 30.82 0.16 -2.56 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 2.05 7.01 -2.39 -0.02 2.03 16 33 H 0.08 1.58 7.92 -2.39 -0.02 1.56 16 34 H 0.11 3.70 5.99 -2.39 -0.01 3.68 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.08 3.24 8.03 -2.38 -0.02 3.22 16 37 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.38 19.95 6.98 -74.06 -0.52 19.43 16 39 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 40 H 0.05 2.38 8.07 -2.39 -0.02 2.36 16 41 H 0.05 2.52 7.82 -2.39 -0.02 2.50 16 42 H 0.07 1.83 7.92 -2.39 -0.02 1.81 16 43 H 0.13 3.86 4.30 -49.12 -0.21 3.65 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -60.13 357.30 1.30 -58.83 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.30 Total: 37.63 kcal Atomic # 6 Polarization: 24.52 SS G_CDS: 5.20 Total: 29.72 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -4.90 Total: -92.84 kcal Atomic # 8 Polarization: -70.87 SS G_CDS: -2.03 Total: -72.90 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.71 Total: -3.72 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -60.13 1.30 -58.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332074707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.418 kcal (2) G-P(sol) polarization free energy of solvation -60.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds