Wall clock time and date at job start Tue Mar 31 2020 15:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.30171 * 126.80525 * 2 1 4 4 O 1.20918 * 111.61224 * 180.02562 * 3 2 1 5 5 C 1.34051 * 111.56268 * 359.76365 * 4 3 2 6 6 C 1.50695 * 126.77606 * 180.28717 * 5 4 3 7 7 C 1.35444 * 106.44376 * 0.38114 * 5 4 3 8 8 C 1.50706 * 128.00825 * 179.91350 * 7 5 4 9 9 C 1.53001 * 109.46693 * 269.67829 * 8 7 5 10 10 N 1.46507 * 109.46597 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99715 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99956 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99507 * 180.02562 * 11 10 9 14 14 H 1.08993 * 109.47358 * 60.00627 * 13 11 10 15 15 C 1.50694 * 109.47557 * 300.00244 * 13 11 10 16 16 H 1.08005 * 119.99844 * 325.10536 * 15 13 11 17 17 C 1.37873 * 120.00327 * 144.82716 * 15 13 11 18 18 N 1.31518 * 120.00024 * 184.98561 * 17 15 13 19 19 Si 1.86799 * 119.99793 * 4.97779 * 17 15 13 20 20 H 1.48506 * 109.47105 * 84.67291 * 19 17 15 21 21 H 1.48502 * 109.47297 * 204.67187 * 19 17 15 22 22 H 1.48503 * 109.47165 * 324.67412 * 19 17 15 23 23 C 1.50706 * 109.46837 * 180.02562 * 13 11 10 24 24 C 1.38236 * 119.99842 * 65.01200 * 23 13 11 25 25 C 1.38235 * 119.99754 * 179.80983 * 24 23 13 26 26 C 1.38239 * 119.99940 * 0.40204 * 25 24 23 27 27 C 1.38234 * 120.00038 * 359.85501 * 26 25 24 28 28 C 1.38228 * 119.99904 * 245.29236 * 23 13 11 29 29 H 1.09004 * 109.47342 * 269.97465 * 1 2 3 30 30 H 1.09000 * 109.47156 * 29.97540 * 1 2 3 31 31 H 1.09008 * 109.47473 * 149.97098 * 1 2 3 32 32 H 1.09006 * 109.47324 * 270.11281 * 6 5 4 33 33 H 1.08996 * 109.47492 * 30.10678 * 6 5 4 34 34 H 1.08995 * 109.46993 * 150.11383 * 6 5 4 35 35 H 1.08990 * 109.47083 * 149.67446 * 8 7 5 36 36 H 1.08999 * 109.46587 * 29.67118 * 8 7 5 37 37 H 1.08995 * 109.47454 * 60.00423 * 9 8 7 38 38 H 1.08999 * 109.47024 * 299.99022 * 9 8 7 39 39 H 0.97000 * 120.00262 * 0.02562 * 10 9 8 40 40 H 0.97005 * 119.99741 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.00365 * 0.02562 * 24 23 13 42 42 H 1.07998 * 120.00073 * 180.23745 * 25 24 23 43 43 H 1.08002 * 119.99764 * 179.83407 * 26 25 24 44 44 H 1.07999 * 119.99887 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.00085 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0422 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 4.9021 -1.3696 0.0112 7 6 2.3539 -1.1321 -0.0007 8 6 1.9589 -2.5864 -0.0002 9 6 1.8241 -3.0787 -1.4426 10 7 1.4407 -4.4927 -1.4420 11 6 1.2627 -5.1430 -2.6091 12 8 1.4204 -4.5578 -3.6596 13 6 0.8678 -6.5974 -2.6085 14 1 -0.0856 -6.7148 -2.0937 15 6 1.9244 -7.4046 -1.8993 16 1 2.9641 -7.1240 -1.9815 17 6 1.5633 -8.4979 -1.1409 18 7 2.4723 -9.1435 -0.4434 19 14 -0.2171 -9.0620 -1.1039 20 1 -0.4790 -9.9508 -2.2645 21 1 -0.4751 -9.8043 0.1561 22 1 -1.1126 -7.8794 -1.1740 23 6 0.7351 -7.0823 -4.0292 24 6 1.8462 -7.1290 -4.8502 25 6 1.7252 -7.5776 -6.1522 26 6 0.4915 -7.9716 -6.6356 27 6 -0.6206 -7.9199 -5.8162 28 6 -0.4988 -7.4750 -4.5130 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5143 32 1 5.2201 -1.5550 -1.0148 33 1 5.6636 -0.7851 0.5276 34 1 4.7626 -2.3202 0.5258 35 1 1.0054 -2.7037 0.5145 36 1 2.7231 -3.1702 0.5130 37 1 2.7777 -2.9614 -1.9572 38 1 1.0599 -2.4949 -1.9557 39 1 1.3143 -4.9606 -0.6019 40 1 2.2182 -9.9125 0.0905 41 1 2.8095 -6.8183 -4.4735 42 1 2.5940 -7.6177 -6.7925 43 1 0.3965 -8.3196 -7.6536 44 1 -1.5845 -8.2274 -6.1940 45 1 -1.3676 -7.4347 -3.8728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361352114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:01 Heat of formation + Delta-G solvation = 30.509937 kcal Electronic energy + Delta-G solvation = -27342.158821 eV Core-core repulsion = 23520.221538 eV Total energy + Delta-G solvation = -3821.937283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.00317 -39.36861 -37.98314 -36.24092 -34.23637 -33.68322 -33.47338 -31.54331 -30.21588 -30.13746 -28.78557 -27.95794 -27.23431 -24.25502 -23.19474 -21.86508 -21.40433 -20.92776 -20.23174 -19.26668 -17.75502 -17.18363 -16.99042 -16.29879 -16.08852 -15.44280 -15.24312 -14.62176 -14.38890 -14.24613 -13.86354 -13.73366 -13.59524 -13.28658 -13.17139 -12.97979 -12.87737 -12.72890 -12.67705 -12.52803 -12.31852 -12.11595 -11.99877 -11.87283 -11.46619 -11.17378 -11.02293 -10.90438 -10.47864 -10.25453 -9.95059 -9.91615 -9.56405 -9.23199 -9.01724 -8.71811 -8.46522 -8.14078 -7.81940 -6.34226 -4.38359 1.36041 2.07786 2.15055 2.21404 3.00545 3.11709 3.20138 3.25271 3.56292 3.85995 4.11662 4.18702 4.33553 4.62241 4.68432 4.93482 4.97971 5.07823 5.12856 5.26261 5.27701 5.33150 5.44064 5.51747 5.54632 5.59062 5.59441 5.63985 5.71313 5.83962 5.89798 5.94718 6.06461 6.08466 6.22075 6.29386 6.32014 6.45250 6.73651 6.84572 7.05998 7.16544 7.24642 7.25686 7.58038 7.79276 8.15757 8.18894 8.25665 8.65908 9.08414 9.24022 10.76640 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.003193 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.484197 B = 8767.339550 C = 9527.266815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.025 3.975 3 N -0.371 5.371 4 O 0.094 5.906 5 C -0.025 4.025 6 C -0.076 4.076 7 C -0.194 4.194 8 C -0.053 4.053 9 C 0.129 3.871 10 N -0.729 5.729 11 C 0.536 3.464 12 O -0.561 6.561 13 C 0.018 3.982 14 H 0.073 0.927 15 C -0.510 4.510 16 H 0.082 0.918 17 C 0.086 3.914 18 N -0.883 5.883 19 Si 0.866 3.134 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.262 1.262 23 C -0.027 4.027 24 C -0.073 4.073 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.129 4.129 28 C -0.137 4.137 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.406 0.594 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 11.103 1.652 11.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 N -0.077 5.077 4 O 0.029 5.971 5 C -0.089 4.089 6 C -0.134 4.134 7 C -0.198 4.198 8 C -0.092 4.092 9 C 0.005 3.995 10 N -0.382 5.382 11 C 0.325 3.675 12 O -0.440 6.440 13 C -0.003 4.003 14 H 0.091 0.909 15 C -0.547 4.547 16 H 0.100 0.900 17 C -0.119 4.119 18 N -0.518 5.518 19 Si 0.693 3.307 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.187 1.187 23 C -0.028 4.028 24 C -0.091 4.091 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.156 4.156 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.241 0.759 40 H 0.079 0.921 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.638 12.683 1.039 12.831 hybrid contribution -0.998 -1.492 0.494 1.862 sum -2.636 11.192 1.533 11.600 Atomic orbital electron populations 1.20187 0.86006 1.03981 1.03316 1.23459 0.98918 0.88497 1.02478 1.73816 0.89330 1.24003 1.20587 1.84786 1.21609 1.22604 1.68053 1.24309 0.98370 0.83678 1.02522 1.20393 0.89817 0.98680 1.04474 1.20776 0.91626 0.97158 1.10284 1.20088 1.03129 0.88425 0.97513 1.21094 1.00678 0.82771 0.94986 1.45859 1.72107 1.10312 1.09927 1.21126 0.74723 0.89226 0.82466 1.90602 1.52219 1.69502 1.31648 1.18586 1.00238 0.89634 0.91881 0.90912 1.20521 0.93527 1.11893 1.28786 0.89975 1.24969 0.97225 0.95664 0.94043 1.69862 1.33744 1.20050 1.28193 0.87028 0.85678 0.79755 0.78281 1.19163 1.21135 1.18708 1.20068 0.92235 0.95121 0.95383 1.20836 0.98687 0.96912 0.92653 1.21036 0.96973 1.00606 0.96129 1.20863 0.93286 1.02947 0.99061 1.20884 0.97970 1.01492 0.94329 1.20972 0.96960 1.02000 0.95632 0.90184 0.90592 0.89752 0.89115 0.89919 0.88664 0.89810 0.89466 0.91985 0.92208 0.75879 0.92107 0.86543 0.87130 0.87334 0.87275 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.39 36.00 0.37 -0.36 16 2 C 0.03 0.31 7.33 -82.10 -0.60 -0.29 16 3 N -0.37 -5.10 12.07 33.42 0.40 -4.69 16 4 O 0.09 1.20 11.20 17.15 0.19 1.39 16 5 C -0.03 -0.28 7.49 -35.31 -0.26 -0.55 16 6 C -0.08 -0.60 10.30 36.00 0.37 -0.23 16 7 C -0.19 -2.27 5.58 -104.42 -0.58 -2.85 16 8 C -0.05 -0.59 5.66 -27.88 -0.16 -0.74 16 9 C 0.13 1.83 5.66 -4.04 -0.02 1.81 16 10 N -0.73 -12.28 5.46 -60.29 -0.33 -12.61 16 11 C 0.54 11.16 7.04 -10.98 -0.08 11.08 16 12 O -0.56 -13.01 15.37 5.56 0.09 -12.92 16 13 C 0.02 0.40 1.90 -94.08 -0.18 0.22 16 14 H 0.07 1.56 4.87 -51.93 -0.25 1.31 16 15 C -0.51 -12.57 8.06 -34.44 -0.28 -12.85 16 16 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 17 C 0.09 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.88 -24.13 13.96 55.43 0.77 -23.35 16 19 Si 0.87 19.33 27.23 -169.99 -4.63 14.70 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.26 -5.41 6.06 56.52 0.34 -5.07 16 23 C -0.03 -0.59 4.11 -104.62 -0.43 -1.02 16 24 C -0.07 -1.57 8.25 -39.58 -0.33 -1.89 16 25 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 26 C -0.14 -2.50 10.05 -39.58 -0.40 -2.89 16 27 C -0.13 -2.31 10.05 -39.58 -0.40 -2.70 16 28 C -0.14 -2.77 9.50 -39.59 -0.38 -3.14 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.69 7.43 -51.93 -0.39 0.31 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.89 7.44 -51.93 -0.39 0.50 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.41 6.36 8.36 -40.82 -0.34 6.02 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.12 2.58 7.93 -52.49 -0.42 2.17 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 45 H 0.11 2.00 7.95 -52.49 -0.42 1.58 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -31.05 382.08 -8.05 -39.10 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.47 Total: 9.77 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -3.84 Total: -17.15 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.85 Total: -40.66 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.28 Total: -11.53 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.63 Total: 14.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.05 -8.05 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361352114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.613 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds