Wall clock time and date at job start Tue Mar 31 2020 15:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.30171 * 126.80525 * 2 1 4 4 O 1.20918 * 111.61224 * 180.02562 * 3 2 1 5 5 C 1.34051 * 111.56268 * 359.76365 * 4 3 2 6 6 C 1.50695 * 126.77606 * 180.28717 * 5 4 3 7 7 C 1.35444 * 106.44376 * 0.38114 * 5 4 3 8 8 C 1.50706 * 128.00825 * 179.91350 * 7 5 4 9 9 C 1.53001 * 109.46693 * 269.67829 * 8 7 5 10 10 N 1.46507 * 109.46597 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99715 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99956 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99507 * 180.02562 * 11 10 9 14 14 H 1.08993 * 109.47358 * 60.00627 * 13 11 10 15 15 C 1.50694 * 109.47557 * 300.00244 * 13 11 10 16 16 H 1.08005 * 119.99844 * 325.10536 * 15 13 11 17 17 C 1.37873 * 120.00327 * 144.82716 * 15 13 11 18 18 N 1.31518 * 120.00024 * 184.98561 * 17 15 13 19 19 Si 1.86799 * 119.99793 * 4.97779 * 17 15 13 20 20 H 1.48506 * 109.47105 * 84.67291 * 19 17 15 21 21 H 1.48502 * 109.47297 * 204.67187 * 19 17 15 22 22 H 1.48503 * 109.47165 * 324.67412 * 19 17 15 23 23 C 1.50706 * 109.46837 * 180.02562 * 13 11 10 24 24 C 1.38236 * 119.99842 * 65.01200 * 23 13 11 25 25 C 1.38235 * 119.99754 * 179.80983 * 24 23 13 26 26 C 1.38239 * 119.99940 * 0.40204 * 25 24 23 27 27 C 1.38234 * 120.00038 * 359.85501 * 26 25 24 28 28 C 1.38228 * 119.99904 * 245.29236 * 23 13 11 29 29 H 1.09004 * 109.47342 * 269.97465 * 1 2 3 30 30 H 1.09000 * 109.47156 * 29.97540 * 1 2 3 31 31 H 1.09008 * 109.47473 * 149.97098 * 1 2 3 32 32 H 1.09006 * 109.47324 * 270.11281 * 6 5 4 33 33 H 1.08996 * 109.47492 * 30.10678 * 6 5 4 34 34 H 1.08995 * 109.46993 * 150.11383 * 6 5 4 35 35 H 1.08990 * 109.47083 * 149.67446 * 8 7 5 36 36 H 1.08999 * 109.46587 * 29.67118 * 8 7 5 37 37 H 1.08995 * 109.47454 * 60.00423 * 9 8 7 38 38 H 1.08999 * 109.47024 * 299.99022 * 9 8 7 39 39 H 0.97000 * 120.00262 * 0.02562 * 10 9 8 40 40 H 0.97005 * 119.99741 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.00365 * 0.02562 * 24 23 13 42 42 H 1.07998 * 120.00073 * 180.23745 * 25 24 23 43 43 H 1.08002 * 119.99764 * 179.83407 * 26 25 24 44 44 H 1.07999 * 119.99887 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.00085 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0422 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 4.9021 -1.3696 0.0112 7 6 2.3539 -1.1321 -0.0007 8 6 1.9589 -2.5864 -0.0002 9 6 1.8241 -3.0787 -1.4426 10 7 1.4407 -4.4927 -1.4420 11 6 1.2627 -5.1430 -2.6091 12 8 1.4204 -4.5578 -3.6596 13 6 0.8678 -6.5974 -2.6085 14 1 -0.0856 -6.7148 -2.0937 15 6 1.9244 -7.4046 -1.8993 16 1 2.9641 -7.1240 -1.9815 17 6 1.5633 -8.4979 -1.1409 18 7 2.4723 -9.1435 -0.4434 19 14 -0.2171 -9.0620 -1.1039 20 1 -0.4790 -9.9508 -2.2645 21 1 -0.4751 -9.8043 0.1561 22 1 -1.1126 -7.8794 -1.1740 23 6 0.7351 -7.0823 -4.0292 24 6 1.8462 -7.1290 -4.8502 25 6 1.7252 -7.5776 -6.1522 26 6 0.4915 -7.9716 -6.6356 27 6 -0.6206 -7.9199 -5.8162 28 6 -0.4988 -7.4750 -4.5130 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5143 32 1 5.2201 -1.5550 -1.0148 33 1 5.6636 -0.7851 0.5276 34 1 4.7626 -2.3202 0.5258 35 1 1.0054 -2.7037 0.5145 36 1 2.7231 -3.1702 0.5130 37 1 2.7777 -2.9614 -1.9572 38 1 1.0599 -2.4949 -1.9557 39 1 1.3143 -4.9606 -0.6019 40 1 2.2182 -9.9125 0.0905 41 1 2.8095 -6.8183 -4.4735 42 1 2.5940 -7.6177 -6.7925 43 1 0.3965 -8.3196 -7.6536 44 1 -1.5845 -8.2274 -6.1940 45 1 -1.3676 -7.4347 -3.8728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361352114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:00 Heat of formation + Delta-G solvation = 12.722443 kcal Electronic energy + Delta-G solvation = -27342.930145 eV Core-core repulsion = 23520.221538 eV Total energy + Delta-G solvation = -3822.708606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.93454 -40.95757 -39.45649 -37.32506 -35.51586 -35.35920 -34.47531 -33.31990 -31.61346 -31.31381 -29.63454 -29.38060 -28.23874 -25.79280 -24.62140 -23.35683 -22.50504 -22.29762 -21.17292 -20.76647 -19.08079 -18.71280 -18.07572 -17.70221 -17.63181 -16.83082 -16.49877 -16.17100 -15.85053 -15.39669 -15.24884 -14.90638 -14.79546 -14.35321 -14.31972 -14.16043 -14.08062 -13.95164 -13.87144 -13.68644 -13.48690 -13.40389 -13.16732 -13.00489 -12.94967 -12.69905 -12.47624 -12.01220 -11.93735 -11.83061 -11.60428 -11.37566 -10.88730 -10.83783 -10.52723 -10.10695 -9.92704 -9.63078 -9.35254 -8.31282 -6.38925 0.45714 0.65668 0.72136 1.15995 1.35148 1.43561 1.46762 1.90139 2.14560 2.32909 2.51337 2.99966 3.17013 3.23996 3.50767 3.80007 4.01789 4.05433 4.12580 4.23272 4.29461 4.33065 4.38745 4.39955 4.42094 4.50555 4.62355 4.63933 4.66492 4.70747 4.80254 4.83592 4.89111 4.91830 4.98943 5.07205 5.14949 5.22074 5.30783 5.33708 5.42317 5.64937 5.71206 5.75445 5.96598 6.23373 6.32301 6.63730 6.73910 7.26296 7.27361 7.49155 8.82813 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.003193 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.484197 B = 8767.339550 C = 9527.266815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.020 3.980 3 N -0.399 5.399 4 O 0.081 5.919 5 C -0.021 4.021 6 C -0.078 4.078 7 C -0.210 4.210 8 C -0.040 4.040 9 C 0.133 3.867 10 N -0.717 5.717 11 C 0.532 3.468 12 O -0.589 6.589 13 C 0.021 3.979 14 H 0.081 0.919 15 C -0.497 4.497 16 H 0.041 0.959 17 C 0.040 3.960 18 N -0.929 5.929 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.232 1.232 23 C -0.056 4.056 24 C -0.103 4.103 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.126 4.126 28 C -0.154 4.154 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.413 0.587 40 H 0.270 0.730 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 10.808 1.008 11.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 N -0.109 5.109 4 O 0.019 5.981 5 C -0.084 4.084 6 C -0.135 4.135 7 C -0.214 4.214 8 C -0.078 4.078 9 C 0.009 3.991 10 N -0.368 5.368 11 C 0.320 3.680 12 O -0.470 6.470 13 C -0.001 4.001 14 H 0.099 0.901 15 C -0.535 4.535 16 H 0.059 0.941 17 C -0.160 4.160 18 N -0.566 5.566 19 Si 0.742 3.258 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.156 1.156 23 C -0.057 4.057 24 C -0.122 4.122 25 C -0.152 4.152 26 C -0.156 4.156 27 C -0.144 4.144 28 C -0.172 4.172 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.249 0.751 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.151 0.849 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.733 12.419 0.420 12.974 hybrid contribution -0.248 -1.365 0.598 1.511 sum -3.981 11.054 1.018 11.793 Atomic orbital electron populations 1.20311 0.84280 1.04420 1.04532 1.23968 1.00200 0.88365 1.01328 1.73808 0.89802 1.24975 1.22296 1.84754 1.21468 1.23414 1.68421 1.24889 0.99512 0.83248 1.00766 1.20566 0.88912 0.98905 1.05089 1.20873 0.91882 0.97229 1.11435 1.19975 1.04489 0.88046 0.95244 1.21162 0.99688 0.80993 0.97249 1.45785 1.70580 1.11376 1.09075 1.20991 0.74863 0.89054 0.83077 1.90576 1.53666 1.69941 1.32807 1.18520 0.99395 0.89885 0.92267 0.90103 1.20425 0.92398 1.12091 1.28576 0.94109 1.25632 1.01049 0.95650 0.93683 1.69985 1.35939 1.20990 1.29734 0.86171 0.81582 0.80147 0.77859 1.19747 1.20967 1.15587 1.20126 0.93443 0.96708 0.95379 1.20831 0.97786 0.99110 0.94446 1.21361 0.98913 0.99780 0.95184 1.21341 0.92243 1.01223 1.00791 1.21364 0.99873 0.99794 0.93338 1.21252 0.96522 1.02243 0.97176 0.88504 0.90341 0.89088 0.88744 0.87975 0.87822 0.88080 0.88429 0.93307 0.92617 0.75076 0.92096 0.89154 0.84859 0.83355 0.83501 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.39 71.23 0.74 -0.63 16 2 C 0.02 0.48 7.33 43.58 0.32 0.80 16 3 N -0.40 -10.93 12.07 -49.56 -0.60 -11.53 16 4 O 0.08 2.05 11.20 71.53 0.80 2.85 16 5 C -0.02 -0.45 7.49 25.04 0.19 -0.26 16 6 C -0.08 -1.14 10.30 71.23 0.73 -0.41 16 7 C -0.21 -4.71 5.58 -19.73 -0.11 -4.82 16 8 C -0.04 -0.82 5.66 29.85 0.17 -0.65 16 9 C 0.13 3.72 5.66 86.38 0.49 4.21 16 10 N -0.72 -24.03 5.46 -463.05 -2.53 -26.56 16 11 C 0.53 22.43 7.04 87.66 0.62 23.05 16 12 O -0.59 -27.84 15.37 -3.03 -0.05 -27.89 16 13 C 0.02 0.91 1.90 -13.03 -0.02 0.89 16 14 H 0.08 3.37 4.87 -2.39 -0.01 3.36 16 15 C -0.50 -25.23 8.06 25.60 0.21 -25.02 16 16 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 17 C 0.04 2.09 5.47 84.65 0.46 2.55 16 18 N -0.93 -52.02 13.96 21.45 0.30 -51.72 16 19 Si 0.92 39.07 27.23 68.60 1.87 40.94 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.23 -8.68 6.06 99.48 0.60 -8.08 16 23 C -0.06 -2.43 4.11 -19.87 -0.08 -2.51 16 24 C -0.10 -4.53 8.25 22.27 0.18 -4.35 16 25 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 26 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 27 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 28 C -0.15 -5.86 9.50 22.27 0.21 -5.65 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.37 7.43 -2.39 -0.02 1.35 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.83 7.44 -2.39 -0.02 1.81 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 12.68 8.36 -92.71 -0.77 11.91 16 40 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 41 H 0.09 4.28 7.93 -2.91 -0.02 4.26 16 42 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.12 4.16 7.95 -2.91 -0.02 4.14 16 Total: -1.00 -69.39 382.08 4.70 -64.69 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.13 Total: 34.60 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 4.77 Total: -25.38 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -2.82 Total: -89.81 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.75 Total: -25.03 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.87 Total: 40.94 kcal Total: -69.39 4.70 -64.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361352114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.409 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds