Wall clock time and date at job start Tue Mar 31 2020 15:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30172 * 126.80829 * 2 1 4 4 O 1.20922 * 111.60874 * 179.97438 * 3 2 1 5 5 C 1.34030 * 111.56546 * 359.76193 * 4 3 2 6 6 C 1.50703 * 126.77942 * 180.28870 * 5 4 3 7 7 C 1.35450 * 106.44969 * 0.38336 * 5 4 3 8 8 C 1.50700 * 128.01143 * 179.91249 * 7 5 4 9 9 H 1.09002 * 109.47322 * 194.67723 * 8 7 5 10 10 C 1.53004 * 109.47131 * 74.67342 * 8 7 5 11 11 N 1.46503 * 109.47023 * 314.67632 * 8 7 5 12 12 C 1.34769 * 119.99983 * 204.99813 * 11 8 7 13 13 O 1.21275 * 120.00292 * 359.97438 * 12 11 8 14 14 C 1.50703 * 119.99884 * 180.02562 * 12 11 8 15 15 H 1.09005 * 109.47019 * 322.62091 * 14 12 11 16 16 C 1.50703 * 109.47213 * 82.62339 * 14 12 11 17 17 H 1.07997 * 119.99754 * 54.09037 * 16 14 12 18 18 C 1.37881 * 119.99741 * 234.08917 * 16 14 12 19 19 N 1.31513 * 119.99394 * 172.40309 * 18 16 14 20 20 Si 1.86797 * 119.99976 * 352.39947 * 18 16 14 21 21 H 1.48497 * 109.47024 * 84.53235 * 20 18 16 22 22 H 1.48500 * 109.47107 * 204.52815 * 20 18 16 23 23 H 1.48494 * 109.47571 * 324.53034 * 20 18 16 24 24 C 1.50703 * 109.47100 * 202.62218 * 14 12 11 25 25 C 1.38235 * 119.99787 * 292.04851 * 24 14 12 26 26 C 1.38236 * 119.99572 * 179.81059 * 25 24 14 27 27 C 1.38242 * 120.00179 * 0.39552 * 26 25 24 28 28 C 1.38236 * 119.99564 * 359.85712 * 27 26 25 29 29 C 1.38225 * 120.00425 * 359.95600 * 28 27 26 30 30 H 1.09007 * 109.46835 * 270.02192 * 1 2 3 31 31 H 1.09000 * 109.46828 * 30.01884 * 1 2 3 32 32 H 1.08999 * 109.47502 * 150.02062 * 1 2 3 33 33 H 1.09006 * 109.47109 * 270.11560 * 6 5 4 34 34 H 1.08999 * 109.46749 * 30.11233 * 6 5 4 35 35 H 1.08994 * 109.47334 * 150.11168 * 6 5 4 36 36 H 1.09001 * 109.47329 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.47329 * 300.00377 * 10 8 7 38 38 H 1.09004 * 109.46739 * 60.00493 * 10 8 7 39 39 H 0.97005 * 119.99523 * 25.00457 * 11 8 7 40 40 H 0.97005 * 119.99389 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.00589 * 359.97438 * 25 24 14 42 42 H 1.08001 * 119.99998 * 180.22823 * 26 25 24 43 43 H 1.08004 * 119.99923 * 179.83888 * 27 26 25 44 44 H 1.08004 * 119.99165 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.00416 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4538 0.7252 0.0005 5 6 3.6024 -0.6068 0.0061 6 6 4.9021 -1.3697 0.0145 7 6 2.3539 -1.1321 0.0006 8 6 1.9589 -2.5864 0.0016 9 1 0.9057 -2.6771 -0.2643 10 6 2.1858 -3.1756 1.3953 11 7 2.7733 -3.3143 -0.9748 12 6 2.3094 -4.4548 -1.5227 13 8 1.2179 -4.8789 -1.2072 14 6 3.1474 -5.2039 -2.5265 15 1 3.6757 -4.4927 -3.1616 16 6 4.1463 -6.0686 -1.8016 17 1 3.8100 -6.7702 -1.0526 18 6 5.4896 -5.9639 -2.0946 19 7 6.3741 -6.6055 -1.3627 20 14 6.0529 -4.9109 -3.5309 21 1 6.1742 -3.4978 -3.0911 22 1 7.3720 -5.3945 -4.0118 23 1 5.0605 -5.0033 -4.6317 24 6 2.2561 -6.0714 -3.3774 25 6 1.6093 -7.1571 -2.8170 26 6 0.7887 -7.9505 -3.5967 27 6 0.6212 -7.6632 -4.9385 28 6 1.2721 -6.5806 -5.4999 29 6 2.0897 -5.7849 -4.7195 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 5.2208 -1.5557 -1.0112 34 1 5.6631 -0.7851 0.5312 35 1 4.7622 -2.3201 0.5295 36 1 1.9005 -4.2276 1.3959 37 1 3.2390 -3.0849 1.6611 38 1 1.5798 -2.6340 2.1217 39 1 3.6466 -2.9753 -1.2268 40 1 7.3191 -6.5316 -1.5686 41 1 1.7431 -7.3838 -1.7697 42 1 0.2804 -8.7966 -3.1581 43 1 -0.0180 -8.2847 -5.5482 44 1 1.1416 -6.3564 -6.5483 45 1 2.5979 -4.9389 -5.1580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456685524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:40 Heat of formation + Delta-G solvation = 35.026214 kcal Electronic energy + Delta-G solvation = -28432.735841 eV Core-core repulsion = 24610.994399 eV Total energy + Delta-G solvation = -3821.741442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.95037 -39.50341 -38.15097 -36.24352 -34.23004 -33.66901 -32.62993 -31.62039 -30.18751 -30.14746 -28.73275 -27.77358 -27.63043 -24.35712 -23.49398 -21.88617 -21.55800 -20.87432 -19.87045 -19.39482 -17.67532 -17.27122 -17.11828 -16.22581 -16.11780 -15.56581 -14.79448 -14.45862 -14.27351 -14.07295 -13.84159 -13.56309 -13.45502 -13.32827 -13.08083 -12.97639 -12.80435 -12.76912 -12.67802 -12.44482 -12.33279 -12.12421 -11.88698 -11.81163 -11.18961 -11.13572 -11.09422 -10.91729 -10.52311 -10.19733 -10.07433 -9.91162 -9.58434 -9.25080 -9.06267 -8.73468 -8.57254 -8.16541 -7.85563 -6.37571 -4.39430 1.41778 2.09222 2.14024 2.19030 3.01389 3.05749 3.17579 3.19673 3.54325 3.81396 4.12249 4.13201 4.43190 4.59581 4.78801 4.94027 4.97871 5.18326 5.36836 5.37447 5.41964 5.46030 5.52095 5.54306 5.56183 5.61930 5.67233 5.74798 5.82934 5.92855 5.94047 6.00080 6.07174 6.12605 6.23170 6.32604 6.37583 6.46679 6.70159 6.82780 6.99723 7.13838 7.21552 7.24216 7.55731 7.76071 8.06872 8.23999 8.24415 8.67003 9.03665 9.20059 10.73591 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.004620 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.162698 B = 6059.773244 C = 7313.253675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.031 3.969 3 N -0.371 5.371 4 O 0.095 5.905 5 C -0.017 4.017 6 C -0.089 4.089 7 C -0.207 4.207 8 C 0.223 3.777 9 H 0.096 0.904 10 C -0.157 4.157 11 N -0.731 5.731 12 C 0.535 3.465 13 O -0.555 6.555 14 C 0.033 3.967 15 H 0.058 0.942 16 C -0.505 4.505 17 H 0.085 0.915 18 C 0.083 3.917 19 N -0.878 5.878 20 Si 0.862 3.138 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.033 4.033 25 C -0.068 4.068 26 C -0.131 4.131 27 C -0.141 4.141 28 C -0.131 4.131 29 C -0.134 4.134 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.397 0.603 40 H 0.270 0.730 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 8.986 0.533 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 N -0.077 5.077 4 O 0.031 5.969 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.211 4.211 8 C 0.118 3.882 9 H 0.114 0.886 10 C -0.215 4.215 11 N -0.385 5.385 12 C 0.325 3.675 13 O -0.433 6.433 14 C 0.012 3.988 15 H 0.076 0.924 16 C -0.542 4.542 17 H 0.103 0.897 18 C -0.121 4.121 19 N -0.513 5.513 20 Si 0.688 3.312 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.034 4.034 25 C -0.086 4.086 26 C -0.150 4.150 27 C -0.160 4.160 28 C -0.149 4.149 29 C -0.152 4.152 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.232 0.768 40 H 0.080 0.920 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.750 9.945 0.795 12.045 hybrid contribution 0.956 -0.092 -0.883 1.305 sum -5.794 9.853 -0.089 11.430 Atomic orbital electron populations 1.20199 0.85947 1.03917 1.03425 1.23377 0.98874 0.88225 1.02321 1.73821 0.89291 1.23869 1.20755 1.84780 1.21595 1.22552 1.67973 1.24317 0.98300 0.83580 1.01863 1.20600 0.89969 0.99262 1.04803 1.21145 0.91933 0.97388 1.10666 1.18892 0.96718 0.82747 0.89871 0.88599 1.22164 1.02104 1.02162 0.95076 1.46189 1.21496 1.25919 1.44854 1.21486 0.85706 0.78657 0.81662 1.90571 1.22125 1.66850 1.63745 1.18343 0.93627 0.94401 0.92472 0.92427 1.20528 0.89189 1.22035 1.22473 0.89710 1.25030 0.96328 0.95187 0.95603 1.69867 1.01981 1.41809 1.37677 0.87070 0.79013 0.80791 0.84311 1.19697 1.20814 1.18407 1.19981 0.94176 0.95871 0.93327 1.20921 0.94412 0.93447 0.99847 1.21064 0.99892 0.99873 0.94132 1.20889 1.01356 0.98356 0.95363 1.20880 0.98723 0.96426 0.98886 1.21005 0.99814 1.00132 0.94224 0.90057 0.90576 0.89749 0.88957 0.89387 0.87894 0.90847 0.92211 0.92269 0.76834 0.92025 0.86073 0.87082 0.87333 0.87279 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.34 36.00 0.37 -0.43 16 2 C 0.03 0.42 7.33 -82.10 -0.60 -0.18 16 3 N -0.37 -5.44 12.07 33.42 0.40 -5.04 16 4 O 0.09 1.33 11.20 17.20 0.19 1.52 16 5 C -0.02 -0.22 7.34 -35.30 -0.26 -0.48 16 6 C -0.09 -0.99 8.72 36.01 0.31 -0.67 16 7 C -0.21 -2.87 5.24 -104.42 -0.55 -3.41 16 8 C 0.22 3.35 2.84 -69.08 -0.20 3.15 16 9 H 0.10 1.50 6.79 -51.93 -0.35 1.15 16 10 C -0.16 -2.22 9.47 37.16 0.35 -1.87 16 11 N -0.73 -12.67 4.90 -54.93 -0.27 -12.94 16 12 C 0.54 11.09 6.90 -10.99 -0.08 11.01 16 13 O -0.56 -12.51 14.91 5.56 0.08 -12.42 16 14 C 0.03 0.73 2.19 -94.07 -0.21 0.52 16 15 H 0.06 1.21 4.72 -51.93 -0.25 0.96 16 16 C -0.50 -12.60 8.22 -34.44 -0.28 -12.88 16 17 H 0.08 2.37 7.70 -52.49 -0.40 1.97 16 18 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.88 -23.79 13.96 55.43 0.77 -23.01 16 20 Si 0.86 18.60 26.86 -169.99 -4.57 14.03 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.26 -5.50 6.94 56.52 0.39 -5.11 16 24 C -0.03 -0.70 4.53 -104.62 -0.47 -1.18 16 25 C -0.07 -1.44 8.06 -39.58 -0.32 -1.75 16 26 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 27 C -0.14 -2.37 10.05 -39.58 -0.40 -2.77 16 28 C -0.13 -2.25 10.05 -39.59 -0.40 -2.65 16 29 C -0.13 -2.60 9.67 -39.59 -0.38 -2.98 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.85 7.45 -51.93 -0.39 0.46 16 33 H 0.09 1.01 7.78 -51.93 -0.40 0.60 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.20 6.41 -51.93 -0.33 0.87 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 0.81 6.81 -51.93 -0.35 0.46 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.40 6.47 6.11 -40.82 -0.25 6.22 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.12 2.68 7.45 -52.49 -0.39 2.29 16 42 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 45 H 0.11 1.96 7.96 -52.49 -0.42 1.55 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -29.50 373.85 -7.41 -36.91 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -6.06 Total: 12.65 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -3.60 Total: -17.34 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.91 Total: -40.99 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.28 Total: -10.90 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.57 Total: 14.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.50 -7.41 -36.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456685524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.932 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds