Wall clock time and date at job start Tue Mar 31 2020 15:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30172 * 126.80829 * 2 1 4 4 O 1.20922 * 111.60874 * 179.97438 * 3 2 1 5 5 C 1.34030 * 111.56546 * 359.76193 * 4 3 2 6 6 C 1.50703 * 126.77942 * 180.28870 * 5 4 3 7 7 C 1.35450 * 106.44969 * 0.38336 * 5 4 3 8 8 C 1.50700 * 128.01143 * 179.91249 * 7 5 4 9 9 H 1.09002 * 109.47322 * 194.67723 * 8 7 5 10 10 C 1.53004 * 109.47131 * 74.67342 * 8 7 5 11 11 N 1.46503 * 109.47023 * 314.67632 * 8 7 5 12 12 C 1.34769 * 119.99983 * 204.99813 * 11 8 7 13 13 O 1.21275 * 120.00292 * 359.97438 * 12 11 8 14 14 C 1.50703 * 119.99884 * 180.02562 * 12 11 8 15 15 H 1.09005 * 109.47019 * 322.62091 * 14 12 11 16 16 C 1.50703 * 109.47213 * 82.62339 * 14 12 11 17 17 H 1.07997 * 119.99754 * 54.09037 * 16 14 12 18 18 C 1.37881 * 119.99741 * 234.08917 * 16 14 12 19 19 N 1.31513 * 119.99394 * 172.40309 * 18 16 14 20 20 Si 1.86797 * 119.99976 * 352.39947 * 18 16 14 21 21 H 1.48497 * 109.47024 * 84.53235 * 20 18 16 22 22 H 1.48500 * 109.47107 * 204.52815 * 20 18 16 23 23 H 1.48494 * 109.47571 * 324.53034 * 20 18 16 24 24 C 1.50703 * 109.47100 * 202.62218 * 14 12 11 25 25 C 1.38235 * 119.99787 * 292.04851 * 24 14 12 26 26 C 1.38236 * 119.99572 * 179.81059 * 25 24 14 27 27 C 1.38242 * 120.00179 * 0.39552 * 26 25 24 28 28 C 1.38236 * 119.99564 * 359.85712 * 27 26 25 29 29 C 1.38225 * 120.00425 * 359.95600 * 28 27 26 30 30 H 1.09007 * 109.46835 * 270.02192 * 1 2 3 31 31 H 1.09000 * 109.46828 * 30.01884 * 1 2 3 32 32 H 1.08999 * 109.47502 * 150.02062 * 1 2 3 33 33 H 1.09006 * 109.47109 * 270.11560 * 6 5 4 34 34 H 1.08999 * 109.46749 * 30.11233 * 6 5 4 35 35 H 1.08994 * 109.47334 * 150.11168 * 6 5 4 36 36 H 1.09001 * 109.47329 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.47329 * 300.00377 * 10 8 7 38 38 H 1.09004 * 109.46739 * 60.00493 * 10 8 7 39 39 H 0.97005 * 119.99523 * 25.00457 * 11 8 7 40 40 H 0.97005 * 119.99389 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.00589 * 359.97438 * 25 24 14 42 42 H 1.08001 * 119.99998 * 180.22823 * 26 25 24 43 43 H 1.08004 * 119.99923 * 179.83888 * 27 26 25 44 44 H 1.08004 * 119.99165 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.00416 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4538 0.7252 0.0005 5 6 3.6024 -0.6068 0.0061 6 6 4.9021 -1.3697 0.0145 7 6 2.3539 -1.1321 0.0006 8 6 1.9589 -2.5864 0.0016 9 1 0.9057 -2.6771 -0.2643 10 6 2.1858 -3.1756 1.3953 11 7 2.7733 -3.3143 -0.9748 12 6 2.3094 -4.4548 -1.5227 13 8 1.2179 -4.8789 -1.2072 14 6 3.1474 -5.2039 -2.5265 15 1 3.6757 -4.4927 -3.1616 16 6 4.1463 -6.0686 -1.8016 17 1 3.8100 -6.7702 -1.0526 18 6 5.4896 -5.9639 -2.0946 19 7 6.3741 -6.6055 -1.3627 20 14 6.0529 -4.9109 -3.5309 21 1 6.1742 -3.4978 -3.0911 22 1 7.3720 -5.3945 -4.0118 23 1 5.0605 -5.0033 -4.6317 24 6 2.2561 -6.0714 -3.3774 25 6 1.6093 -7.1571 -2.8170 26 6 0.7887 -7.9505 -3.5967 27 6 0.6212 -7.6632 -4.9385 28 6 1.2721 -6.5806 -5.4999 29 6 2.0897 -5.7849 -4.7195 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 5.2208 -1.5557 -1.0112 34 1 5.6631 -0.7851 0.5312 35 1 4.7622 -2.3201 0.5295 36 1 1.9005 -4.2276 1.3959 37 1 3.2390 -3.0849 1.6611 38 1 1.5798 -2.6340 2.1217 39 1 3.6466 -2.9753 -1.2268 40 1 7.3191 -6.5316 -1.5686 41 1 1.7431 -7.3838 -1.7697 42 1 0.2804 -8.7966 -3.1581 43 1 -0.0180 -8.2847 -5.5482 44 1 1.1416 -6.3564 -6.5483 45 1 2.5979 -4.9389 -5.1580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456685524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:39 Heat of formation + Delta-G solvation = 18.561445 kcal Electronic energy + Delta-G solvation = -28433.449807 eV Core-core repulsion = 24610.994399 eV Total energy + Delta-G solvation = -3822.455408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.01511 -41.06863 -39.58474 -37.55586 -35.48188 -35.30894 -33.83160 -33.36003 -31.60909 -31.45599 -29.65389 -29.33166 -28.69243 -25.84321 -24.99742 -23.35086 -22.88377 -22.08687 -21.14497 -20.82245 -19.10415 -18.74598 -18.46206 -17.66964 -17.50556 -16.97113 -16.40325 -15.79107 -15.68166 -15.53389 -15.23752 -14.78683 -14.58129 -14.45526 -14.45099 -14.26081 -14.11111 -13.99315 -13.76537 -13.67433 -13.62330 -13.36190 -13.31816 -13.06080 -12.85348 -12.72628 -12.23004 -12.06047 -12.02829 -11.88410 -11.69038 -11.39947 -10.96324 -10.87062 -10.56289 -10.26765 -10.01462 -9.62249 -9.35696 -8.32684 -6.40126 0.36395 0.64961 0.72211 1.07162 1.32302 1.42713 1.49819 1.88834 2.01967 2.31623 2.41413 3.01561 3.11891 3.17596 3.45190 3.64795 3.89345 4.06762 4.16348 4.24067 4.26979 4.30389 4.37779 4.42054 4.44340 4.49745 4.53084 4.58596 4.62522 4.64883 4.78820 4.82195 4.84888 4.90159 4.92707 5.05218 5.14743 5.22167 5.29603 5.35103 5.40948 5.58957 5.71609 5.76919 5.97305 6.22136 6.32592 6.61297 6.65651 7.19546 7.23071 7.43158 8.82242 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.004620 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.162698 B = 6059.773244 C = 7313.253675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.032 3.968 3 N -0.389 5.389 4 O 0.089 5.911 5 C -0.006 4.006 6 C -0.093 4.093 7 C -0.222 4.222 8 C 0.228 3.772 9 H 0.090 0.910 10 C -0.152 4.152 11 N -0.722 5.722 12 C 0.534 3.466 13 O -0.579 6.579 14 C 0.036 3.964 15 H 0.069 0.931 16 C -0.502 4.502 17 H 0.034 0.966 18 C 0.037 3.963 19 N -0.927 5.927 20 Si 0.917 3.083 21 H -0.236 1.236 22 H -0.288 1.288 23 H -0.250 1.250 24 C -0.063 4.063 25 C -0.098 4.098 26 C -0.136 4.136 27 C -0.134 4.134 28 C -0.125 4.125 29 C -0.147 4.147 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.402 0.598 40 H 0.272 0.728 41 H 0.089 0.911 42 H 0.133 0.867 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 10.622 -1.689 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 N -0.098 5.098 4 O 0.028 5.972 5 C -0.070 4.070 6 C -0.150 4.150 7 C -0.226 4.226 8 C 0.123 3.877 9 H 0.108 0.892 10 C -0.210 4.210 11 N -0.374 5.374 12 C 0.322 3.678 13 O -0.459 6.459 14 C 0.014 3.986 15 H 0.087 0.913 16 C -0.540 4.540 17 H 0.052 0.948 18 C -0.164 4.164 19 N -0.564 5.564 20 Si 0.739 3.261 21 H -0.159 1.159 22 H -0.214 1.214 23 H -0.174 1.174 24 C -0.064 4.064 25 C -0.116 4.116 26 C -0.154 4.154 27 C -0.152 4.152 28 C -0.143 4.143 29 C -0.165 4.165 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.151 0.849 43 H 0.167 0.833 44 H 0.166 0.834 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.450 11.619 -1.412 13.874 hybrid contribution 1.085 -0.686 -0.148 1.293 sum -6.364 10.932 -1.560 12.746 Atomic orbital electron populations 1.20338 0.84048 1.04482 1.04740 1.23816 1.00173 0.87668 1.01059 1.73823 0.89577 1.24393 1.22030 1.84767 1.21524 1.22747 1.68147 1.24626 0.98763 0.83408 1.00217 1.20723 0.89801 0.99007 1.05428 1.20990 0.92644 0.96570 1.12407 1.18878 0.95952 0.83423 0.89420 0.89237 1.22112 1.02851 1.00714 0.95351 1.46111 1.21773 1.24979 1.44561 1.21282 0.85386 0.79439 0.81650 1.90548 1.23159 1.67711 1.64472 1.18267 0.93349 0.94297 0.92693 0.91291 1.20423 0.90304 1.21579 1.21693 0.94790 1.25780 0.96021 0.96519 0.98071 1.70009 1.02399 1.44146 1.39830 0.86173 0.78130 0.80898 0.80911 1.15915 1.21410 1.17364 1.20049 0.95467 0.96340 0.94549 1.20852 0.96693 0.95071 0.98983 1.21362 0.99058 0.99927 0.95034 1.21358 1.00802 0.98297 0.94745 1.21347 0.97003 0.95460 1.00507 1.21259 1.00670 1.01221 0.93393 0.88325 0.89576 0.89567 0.88333 0.86823 0.88716 0.93510 0.91735 0.89901 0.76147 0.91912 0.89231 0.84943 0.83293 0.83421 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.34 71.23 0.74 -0.77 16 2 C 0.03 0.82 7.33 43.58 0.32 1.14 16 3 N -0.39 -10.86 12.07 -49.55 -0.60 -11.46 16 4 O 0.09 2.37 11.20 71.73 0.80 3.17 16 5 C -0.01 -0.15 7.34 25.04 0.18 0.03 16 6 C -0.09 -1.88 8.72 71.24 0.62 -1.26 16 7 C -0.22 -5.88 5.24 -19.73 -0.10 -5.99 16 8 C 0.23 6.80 2.84 44.25 0.13 6.92 16 9 H 0.09 2.81 6.79 -2.39 -0.02 2.79 16 10 C -0.15 -4.33 9.47 71.98 0.68 -3.65 16 11 N -0.72 -25.09 4.90 -446.09 -2.19 -27.28 16 12 C 0.53 22.71 6.90 87.66 0.60 23.32 16 13 O -0.58 -27.18 14.91 -3.01 -0.04 -27.22 16 14 C 0.04 1.59 2.19 -13.03 -0.03 1.56 16 15 H 0.07 2.84 4.72 -2.38 -0.01 2.83 16 16 C -0.50 -26.31 8.22 25.60 0.21 -26.10 16 17 H 0.03 2.07 7.70 -2.91 -0.02 2.05 16 18 C 0.04 1.90 5.47 84.66 0.46 2.36 16 19 N -0.93 -52.09 13.96 21.45 0.30 -51.79 16 20 Si 0.92 37.51 26.86 68.60 1.84 39.35 16 21 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 22 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.25 -9.78 6.94 99.48 0.69 -9.09 16 24 C -0.06 -2.75 4.53 -19.86 -0.09 -2.84 16 25 C -0.10 -4.27 8.06 22.27 0.18 -4.09 16 26 C -0.14 -4.82 10.05 22.27 0.22 -4.60 16 27 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 28 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 29 C -0.15 -5.46 9.67 22.27 0.22 -5.25 16 30 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.62 7.45 -2.39 -0.02 1.60 16 33 H 0.10 1.92 7.78 -2.38 -0.02 1.90 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 2.12 6.41 -2.39 -0.02 2.11 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.75 6.81 -2.39 -0.02 1.74 16 38 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.40 12.88 6.11 -92.70 -0.57 12.31 16 40 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 41 H 0.09 4.35 7.45 -2.91 -0.02 4.32 16 42 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 43 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 44 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 45 H 0.12 4.09 7.96 -2.91 -0.02 4.07 16 Total: -1.00 -67.27 373.85 5.34 -61.92 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: 0.44 Total: 39.98 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 4.79 Total: -26.68 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.49 Total: -90.53 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: 0.76 Total: -24.05 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 1.84 Total: 39.35 kcal Total: -67.27 5.34 -61.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456685524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.486 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds