Wall clock time and date at job start Tue Mar 31 2020 15:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30176 * 126.80387 * 2 1 4 4 O 1.20926 * 111.60574 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56299 * 359.75791 * 4 3 2 6 6 C 1.50707 * 126.77391 * 180.28520 * 5 4 3 7 7 C 1.35449 * 106.45110 * 0.38210 * 5 4 3 8 8 C 1.50694 * 128.00894 * 179.90779 * 7 5 4 9 9 H 1.09004 * 109.47123 * 194.67637 * 8 7 5 10 10 C 1.53007 * 109.46866 * 74.68107 * 8 7 5 11 11 N 1.46497 * 109.47273 * 314.68261 * 8 7 5 12 12 C 1.34780 * 119.99874 * 204.99499 * 11 8 7 13 13 O 1.21287 * 120.00145 * 0.02562 * 12 11 8 14 14 C 1.50700 * 120.00166 * 179.97438 * 12 11 8 15 15 H 1.08997 * 109.47059 * 59.99971 * 14 12 11 16 16 C 1.50707 * 109.47164 * 300.00516 * 14 12 11 17 17 H 1.07999 * 119.99967 * 333.16877 * 16 14 12 18 18 C 1.37878 * 120.00083 * 153.16518 * 16 14 12 19 19 N 1.31513 * 119.99720 * 6.15240 * 18 16 14 20 20 Si 1.86797 * 119.99841 * 186.43086 * 18 16 14 21 21 H 1.48507 * 109.46896 * 179.72382 * 20 18 16 22 22 H 1.48504 * 109.47080 * 299.72193 * 20 18 16 23 23 H 1.48491 * 109.47334 * 59.72326 * 20 18 16 24 24 C 1.50694 * 109.47604 * 180.02562 * 14 12 11 25 25 C 1.38240 * 119.99847 * 66.38847 * 24 14 12 26 26 C 1.38234 * 119.99672 * 179.79334 * 25 24 14 27 27 C 1.38234 * 120.00278 * 0.43873 * 26 25 24 28 28 C 1.38239 * 120.00141 * 359.81968 * 27 26 25 29 29 C 1.38227 * 120.00134 * 246.67038 * 24 14 12 30 30 H 1.08993 * 109.47450 * 270.03213 * 1 2 3 31 31 H 1.08999 * 109.46852 * 30.03248 * 1 2 3 32 32 H 1.09004 * 109.46912 * 150.02689 * 1 2 3 33 33 H 1.08991 * 109.47475 * 270.11205 * 6 5 4 34 34 H 1.09003 * 109.47072 * 30.11614 * 6 5 4 35 35 H 1.09001 * 109.46558 * 150.10967 * 6 5 4 36 36 H 1.09003 * 109.46638 * 179.97438 * 10 8 7 37 37 H 1.08994 * 109.46772 * 299.99828 * 10 8 7 38 38 H 1.09000 * 109.47288 * 59.99930 * 10 8 7 39 39 H 0.97001 * 120.00005 * 24.99634 * 11 8 7 40 40 H 0.97003 * 119.99932 * 355.80255 * 19 18 16 41 41 H 1.07996 * 120.00067 * 0.02562 * 25 24 14 42 42 H 1.08000 * 119.99872 * 180.28211 * 26 25 24 43 43 H 1.07997 * 120.00409 * 179.83495 * 27 26 25 44 44 H 1.07991 * 120.00263 * 179.97438 * 28 27 26 45 45 H 1.07998 * 120.00359 * 359.97407 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6069 0.0062 6 6 4.9021 -1.3697 0.0145 7 6 2.3539 -1.1321 0.0007 8 6 1.9590 -2.5864 0.0017 9 1 0.9057 -2.6771 -0.2640 10 6 2.1858 -3.1755 1.3955 11 7 2.7734 -3.3143 -0.9745 12 6 2.3095 -4.4550 -1.5223 13 8 1.2175 -4.8786 -1.2074 14 6 3.1470 -5.2035 -2.5270 15 1 4.0904 -5.4971 -2.0667 16 6 3.4218 -4.3154 -3.7131 17 1 2.7311 -3.5250 -3.9674 18 6 4.5550 -4.5118 -4.4736 19 7 5.3326 -5.5462 -4.2397 20 14 4.9896 -3.3044 -5.8310 21 1 6.2490 -3.7337 -6.4907 22 1 3.8934 -3.2695 -6.8322 23 1 5.1721 -1.9504 -5.2494 24 6 2.4053 -6.4337 -2.9823 25 6 1.2404 -6.3066 -3.7156 26 6 0.5624 -7.4352 -4.1370 27 6 1.0443 -8.6907 -3.8173 28 6 2.2063 -8.8178 -3.0794 29 6 2.8867 -7.6892 -2.6617 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 5.2208 -1.5558 -1.0110 34 1 5.6633 -0.7849 0.5312 35 1 4.7623 -2.3200 0.5297 36 1 1.8998 -4.2273 1.3964 37 1 3.2390 -3.0848 1.6612 38 1 1.5799 -2.6339 2.1219 39 1 3.6466 -2.9753 -1.2266 40 1 5.1430 -6.1368 -3.4939 41 1 0.8621 -5.3257 -3.9626 42 1 -0.3453 -7.3359 -4.7138 43 1 0.5132 -9.5724 -4.1442 44 1 2.5826 -9.7987 -2.8293 45 1 3.7945 -7.7885 -2.0853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456685536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:43 Heat of formation + Delta-G solvation = 29.348260 kcal Electronic energy + Delta-G solvation = -28424.884134 eV Core-core repulsion = 24602.896477 eV Total energy + Delta-G solvation = -3821.987657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.91719 -39.48713 -38.07414 -36.24101 -34.20870 -34.02406 -32.62379 -30.97391 -30.19207 -30.05320 -28.70569 -27.73110 -27.11338 -24.30250 -23.60530 -21.70453 -21.49978 -20.85795 -19.93982 -19.47336 -17.64601 -17.60267 -16.91693 -16.17906 -15.78576 -15.58676 -14.72474 -14.35972 -14.15055 -13.92501 -13.87462 -13.56330 -13.47145 -13.38048 -13.15980 -12.97280 -12.81990 -12.69289 -12.50277 -12.36978 -12.25399 -12.10450 -11.96539 -11.60736 -11.12766 -11.03776 -10.95533 -10.87934 -10.34425 -10.24798 -10.18531 -9.88101 -9.21974 -9.04489 -8.85905 -8.65191 -8.57202 -8.05574 -7.69114 -6.61860 -4.37770 1.45204 2.15401 2.25773 2.30590 3.08072 3.30664 3.32781 3.51172 3.53188 3.82156 4.15230 4.35056 4.44878 4.72417 4.77926 4.94539 5.12008 5.16239 5.33925 5.37770 5.39447 5.43326 5.53294 5.58021 5.63295 5.66572 5.71570 5.75703 5.81065 5.90929 5.92931 6.04747 6.07967 6.19597 6.32282 6.36635 6.42915 6.56606 6.83885 6.93341 7.01920 7.25997 7.32246 7.53875 7.78285 7.91302 8.13640 8.18816 8.27511 8.55837 9.03828 9.33940 10.76850 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.004480 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.640233 B = 6248.438897 C = 7568.494373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.032 3.968 3 N -0.370 5.370 4 O 0.096 5.904 5 C -0.015 4.015 6 C -0.087 4.087 7 C -0.206 4.206 8 C 0.222 3.778 9 H 0.095 0.905 10 C -0.157 4.157 11 N -0.726 5.726 12 C 0.536 3.464 13 O -0.561 6.561 14 C 0.045 3.955 15 H 0.065 0.935 16 C -0.595 4.595 17 H 0.057 0.943 18 C 0.033 3.967 19 N -0.891 5.891 20 Si 1.065 2.935 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.019 4.019 25 C -0.078 4.078 26 C -0.132 4.132 27 C -0.146 4.146 28 C -0.129 4.129 29 C -0.127 4.127 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.403 0.597 40 H 0.273 0.727 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 5.014 8.785 10.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 N -0.077 5.077 4 O 0.032 5.968 5 C -0.079 4.079 6 C -0.144 4.144 7 C -0.210 4.210 8 C 0.116 3.884 9 H 0.113 0.887 10 C -0.215 4.215 11 N -0.380 5.380 12 C 0.325 3.675 13 O -0.439 6.439 14 C 0.023 3.977 15 H 0.082 0.918 16 C -0.633 4.633 17 H 0.075 0.925 18 C -0.174 4.174 19 N -0.525 5.525 20 Si 0.892 3.108 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.020 4.020 25 C -0.096 4.096 26 C -0.151 4.151 27 C -0.164 4.164 28 C -0.147 4.147 29 C -0.145 4.145 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.239 0.761 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.892 6.311 7.793 10.437 hybrid contribution -0.791 -0.877 0.931 1.504 sum -3.683 5.434 8.724 10.918 Atomic orbital electron populations 1.20194 0.86007 1.04000 1.03290 1.23366 0.98863 0.88243 1.02307 1.73820 0.89276 1.23844 1.20712 1.84781 1.21598 1.22498 1.67946 1.24257 0.98209 0.83653 1.01818 1.20564 0.90022 0.98728 1.05118 1.21079 0.91975 0.97265 1.10718 1.18870 0.96999 0.83034 0.89489 0.88714 1.22174 1.01858 1.01941 0.95539 1.46125 1.21924 1.25741 1.44168 1.21340 0.86711 0.79786 0.79637 1.90592 1.22338 1.68123 1.62846 1.18151 0.93877 0.91303 0.94337 0.91764 1.21544 1.10411 1.17417 1.13888 0.92465 1.25826 0.92907 0.98143 1.00541 1.70802 1.40627 1.12521 1.28549 0.83575 0.76685 0.74853 0.75647 1.20536 1.21247 1.21125 1.20075 0.93441 0.94262 0.94187 1.20785 0.94714 0.97679 0.96430 1.20983 0.99889 0.92982 1.01198 1.20825 0.97484 0.96732 1.01348 1.20883 0.96162 0.97710 0.99918 1.20952 0.99832 0.92486 1.01239 0.90148 0.90525 0.89780 0.88318 0.89507 0.88656 0.91237 0.92446 0.92022 0.76058 0.91501 0.87049 0.87432 0.87527 0.87408 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.34 36.00 0.37 -0.48 16 2 C 0.03 0.44 7.33 -82.10 -0.60 -0.16 16 3 N -0.37 -5.61 12.07 33.43 0.40 -5.21 16 4 O 0.10 1.37 11.20 17.17 0.19 1.56 16 5 C -0.02 -0.20 7.34 -35.30 -0.26 -0.46 16 6 C -0.09 -0.89 8.72 36.01 0.31 -0.57 16 7 C -0.21 -2.90 5.24 -104.42 -0.55 -3.45 16 8 C 0.22 3.30 2.84 -69.08 -0.20 3.11 16 9 H 0.09 1.54 6.79 -51.93 -0.35 1.18 16 10 C -0.16 -2.02 9.47 37.16 0.35 -1.66 16 11 N -0.73 -12.56 4.80 -54.93 -0.26 -12.83 16 12 C 0.54 11.25 7.01 -10.98 -0.08 11.17 16 13 O -0.56 -12.87 15.09 5.55 0.08 -12.78 16 14 C 0.04 1.01 1.94 -94.07 -0.18 0.83 16 15 H 0.06 1.49 6.63 -51.93 -0.34 1.14 16 16 C -0.60 -14.59 7.45 -34.44 -0.26 -14.85 16 17 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 18 C 0.03 0.84 5.45 -17.82 -0.10 0.74 16 19 N -0.89 -23.89 13.63 55.43 0.76 -23.14 16 20 Si 1.07 23.00 29.91 -169.99 -5.08 17.91 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 C -0.02 -0.42 4.17 -104.63 -0.44 -0.86 16 25 C -0.08 -1.74 8.32 -39.58 -0.33 -2.07 16 26 C -0.13 -2.60 10.05 -39.58 -0.40 -3.00 16 27 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 28 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 29 C -0.13 -2.68 9.51 -39.58 -0.38 -3.06 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.91 7.45 -51.93 -0.39 0.53 16 33 H 0.10 1.04 7.78 -51.93 -0.40 0.64 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.92 6.41 -51.93 -0.33 0.59 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.66 6.81 -51.93 -0.35 0.31 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.40 6.65 5.99 -40.82 -0.24 6.41 16 40 H 0.27 7.23 6.49 -40.82 -0.26 6.96 16 41 H 0.11 2.56 7.88 -52.49 -0.41 2.14 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.11 2.14 7.96 -52.49 -0.42 1.73 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -30.17 376.15 -7.86 -38.04 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.10 Total: 11.44 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -3.51 Total: -20.67 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.90 Total: -41.17 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.28 Total: -11.22 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.08 Total: 17.91 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.17 -7.86 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456685536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.384 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds