Wall clock time and date at job start Tue Mar 31 2020 15:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30176 * 126.80387 * 2 1 4 4 O 1.20926 * 111.60574 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56299 * 359.75791 * 4 3 2 6 6 C 1.50707 * 126.77391 * 180.28520 * 5 4 3 7 7 C 1.35449 * 106.45110 * 0.38210 * 5 4 3 8 8 C 1.50694 * 128.00894 * 179.90779 * 7 5 4 9 9 H 1.09004 * 109.47123 * 194.67637 * 8 7 5 10 10 C 1.53007 * 109.46866 * 74.68107 * 8 7 5 11 11 N 1.46497 * 109.47273 * 314.68261 * 8 7 5 12 12 C 1.34780 * 119.99874 * 204.99499 * 11 8 7 13 13 O 1.21287 * 120.00145 * 0.02562 * 12 11 8 14 14 C 1.50700 * 120.00166 * 179.97438 * 12 11 8 15 15 H 1.08997 * 109.47059 * 59.99971 * 14 12 11 16 16 C 1.50707 * 109.47164 * 300.00516 * 14 12 11 17 17 H 1.07999 * 119.99967 * 333.16877 * 16 14 12 18 18 C 1.37878 * 120.00083 * 153.16518 * 16 14 12 19 19 N 1.31513 * 119.99720 * 6.15240 * 18 16 14 20 20 Si 1.86797 * 119.99841 * 186.43086 * 18 16 14 21 21 H 1.48507 * 109.46896 * 179.72382 * 20 18 16 22 22 H 1.48504 * 109.47080 * 299.72193 * 20 18 16 23 23 H 1.48491 * 109.47334 * 59.72326 * 20 18 16 24 24 C 1.50694 * 109.47604 * 180.02562 * 14 12 11 25 25 C 1.38240 * 119.99847 * 66.38847 * 24 14 12 26 26 C 1.38234 * 119.99672 * 179.79334 * 25 24 14 27 27 C 1.38234 * 120.00278 * 0.43873 * 26 25 24 28 28 C 1.38239 * 120.00141 * 359.81968 * 27 26 25 29 29 C 1.38227 * 120.00134 * 246.67038 * 24 14 12 30 30 H 1.08993 * 109.47450 * 270.03213 * 1 2 3 31 31 H 1.08999 * 109.46852 * 30.03248 * 1 2 3 32 32 H 1.09004 * 109.46912 * 150.02689 * 1 2 3 33 33 H 1.08991 * 109.47475 * 270.11205 * 6 5 4 34 34 H 1.09003 * 109.47072 * 30.11614 * 6 5 4 35 35 H 1.09001 * 109.46558 * 150.10967 * 6 5 4 36 36 H 1.09003 * 109.46638 * 179.97438 * 10 8 7 37 37 H 1.08994 * 109.46772 * 299.99828 * 10 8 7 38 38 H 1.09000 * 109.47288 * 59.99930 * 10 8 7 39 39 H 0.97001 * 120.00005 * 24.99634 * 11 8 7 40 40 H 0.97003 * 119.99932 * 355.80255 * 19 18 16 41 41 H 1.07996 * 120.00067 * 0.02562 * 25 24 14 42 42 H 1.08000 * 119.99872 * 180.28211 * 26 25 24 43 43 H 1.07997 * 120.00409 * 179.83495 * 27 26 25 44 44 H 1.07991 * 120.00263 * 179.97438 * 28 27 26 45 45 H 1.07998 * 120.00359 * 359.97407 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6069 0.0062 6 6 4.9021 -1.3697 0.0145 7 6 2.3539 -1.1321 0.0007 8 6 1.9590 -2.5864 0.0017 9 1 0.9057 -2.6771 -0.2640 10 6 2.1858 -3.1755 1.3955 11 7 2.7734 -3.3143 -0.9745 12 6 2.3095 -4.4550 -1.5223 13 8 1.2175 -4.8786 -1.2074 14 6 3.1470 -5.2035 -2.5270 15 1 4.0904 -5.4971 -2.0667 16 6 3.4218 -4.3154 -3.7131 17 1 2.7311 -3.5250 -3.9674 18 6 4.5550 -4.5118 -4.4736 19 7 5.3326 -5.5462 -4.2397 20 14 4.9896 -3.3044 -5.8310 21 1 6.2490 -3.7337 -6.4907 22 1 3.8934 -3.2695 -6.8322 23 1 5.1721 -1.9504 -5.2494 24 6 2.4053 -6.4337 -2.9823 25 6 1.2404 -6.3066 -3.7156 26 6 0.5624 -7.4352 -4.1370 27 6 1.0443 -8.6907 -3.8173 28 6 2.2063 -8.8178 -3.0794 29 6 2.8867 -7.6892 -2.6617 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 5.2208 -1.5558 -1.0110 34 1 5.6633 -0.7849 0.5312 35 1 4.7623 -2.3200 0.5297 36 1 1.8998 -4.2273 1.3964 37 1 3.2390 -3.0848 1.6612 38 1 1.5799 -2.6339 2.1219 39 1 3.6466 -2.9753 -1.2266 40 1 5.1430 -6.1368 -3.4939 41 1 0.8621 -5.3257 -3.9626 42 1 -0.3453 -7.3359 -4.7138 43 1 0.5132 -9.5724 -4.1442 44 1 2.5826 -9.7987 -2.8293 45 1 3.7945 -7.7885 -2.0853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456685536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:42 Heat of formation + Delta-G solvation = 13.559391 kcal Electronic energy + Delta-G solvation = -28425.568791 eV Core-core repulsion = 24602.896477 eV Total energy + Delta-G solvation = -3822.672314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.01225 -41.09364 -39.59313 -37.56689 -35.86164 -35.32001 -33.81254 -32.70403 -31.62553 -31.45887 -29.67868 -28.82379 -28.64842 -25.83683 -25.11572 -23.27607 -22.89128 -22.10605 -21.35219 -20.83720 -19.31843 -18.74853 -18.27673 -17.58388 -17.38336 -17.00977 -16.28405 -15.72383 -15.66006 -15.46612 -15.40050 -14.85038 -14.59672 -14.48418 -14.27829 -14.21501 -14.04466 -13.97539 -13.83421 -13.65188 -13.60720 -13.33525 -13.23577 -13.06409 -12.83060 -12.59824 -12.23913 -12.03392 -11.97545 -11.91152 -11.77746 -10.97040 -10.90511 -10.63089 -10.54982 -10.25222 -10.01491 -9.63893 -9.32951 -8.61485 -6.37205 0.37964 0.66994 0.72260 1.06563 1.56072 1.59751 1.80129 1.84695 2.05212 2.41219 2.56245 3.09235 3.11564 3.22208 3.45668 3.64297 3.89429 4.11119 4.14644 4.22706 4.24820 4.31806 4.37130 4.39809 4.41422 4.57146 4.58181 4.60028 4.63817 4.68256 4.77721 4.80575 4.85022 4.89763 4.92576 5.05539 5.11534 5.26508 5.27655 5.33469 5.57416 5.70519 5.74091 5.75398 6.06242 6.15965 6.32405 6.54884 6.65958 7.19845 7.38833 7.42330 8.77644 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.004480 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.640233 B = 6248.438897 C = 7568.494373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.028 3.972 3 N -0.391 5.391 4 O 0.088 5.912 5 C -0.006 4.006 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.225 3.775 9 H 0.080 0.920 10 C -0.150 4.150 11 N -0.715 5.715 12 C 0.536 3.464 13 O -0.584 6.584 14 C 0.044 3.956 15 H 0.053 0.947 16 C -0.590 4.590 17 H 0.043 0.957 18 C -0.003 4.003 19 N -0.916 5.916 20 Si 1.102 2.898 21 H -0.284 1.284 22 H -0.285 1.285 23 H -0.264 1.264 24 C -0.044 4.044 25 C -0.107 4.107 26 C -0.135 4.135 27 C -0.141 4.141 28 C -0.127 4.127 29 C -0.148 4.148 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.407 0.593 40 H 0.266 0.734 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 4.678 9.098 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.131 4.131 3 N -0.100 5.100 4 O 0.027 5.973 5 C -0.070 4.070 6 C -0.147 4.147 7 C -0.229 4.229 8 C 0.121 3.879 9 H 0.098 0.902 10 C -0.208 4.208 11 N -0.367 5.367 12 C 0.325 3.675 13 O -0.464 6.464 14 C 0.023 3.977 15 H 0.071 0.929 16 C -0.628 4.628 17 H 0.061 0.939 18 C -0.206 4.206 19 N -0.551 5.551 20 Si 0.925 3.075 21 H -0.209 1.209 22 H -0.211 1.211 23 H -0.189 1.189 24 C -0.045 4.045 25 C -0.126 4.126 26 C -0.153 4.153 27 C -0.159 4.159 28 C -0.145 4.145 29 C -0.166 4.166 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.244 0.756 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.153 0.847 43 H 0.166 0.834 44 H 0.160 0.840 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.090 6.007 8.133 10.573 hybrid contribution -0.778 -0.813 0.862 1.417 sum -3.868 5.194 8.995 11.084 Atomic orbital electron populations 1.20315 0.84264 1.04230 1.04740 1.23826 1.00154 0.87915 1.01254 1.73816 0.89632 1.24442 1.22076 1.84760 1.21454 1.22959 1.68123 1.24726 0.98969 0.83340 0.99926 1.20733 0.89434 0.99067 1.05421 1.21011 0.92691 0.96678 1.12477 1.18909 0.95687 0.83544 0.89797 0.90209 1.22110 1.03291 1.00850 0.94534 1.46048 1.22122 1.24651 1.43896 1.21056 0.86208 0.80639 0.79646 1.90565 1.23116 1.69032 1.63732 1.18084 0.93780 0.91701 0.94122 0.92883 1.21591 1.09799 1.17039 1.14339 0.93884 1.26845 0.92964 0.98702 1.02067 1.70882 1.41582 1.13534 1.29133 0.83101 0.76177 0.74376 0.73872 1.20901 1.21094 1.18907 1.20150 0.94197 0.94852 0.95350 1.20806 0.95613 0.97967 0.98170 1.21338 1.00465 0.92736 1.00748 1.21302 0.97114 0.97546 0.99964 1.21321 0.95932 0.98439 0.98787 1.21163 1.00491 0.92843 1.02086 0.88048 0.89792 0.89980 0.88559 0.86710 0.88054 0.92967 0.90899 0.90002 0.75587 0.92296 0.89051 0.84743 0.83432 0.83996 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.34 71.23 0.74 -0.91 16 2 C 0.03 0.76 7.33 43.58 0.32 1.08 16 3 N -0.39 -11.57 12.07 -49.54 -0.60 -12.17 16 4 O 0.09 2.46 11.20 71.60 0.80 3.26 16 5 C -0.01 -0.14 7.34 25.04 0.18 0.04 16 6 C -0.09 -1.68 8.72 71.24 0.62 -1.06 16 7 C -0.22 -6.16 5.24 -19.74 -0.10 -6.26 16 8 C 0.23 6.68 2.84 44.25 0.13 6.80 16 9 H 0.08 2.63 6.79 -2.39 -0.02 2.61 16 10 C -0.15 -3.71 9.47 71.98 0.68 -3.03 16 11 N -0.71 -25.03 4.80 -446.09 -2.14 -27.17 16 12 C 0.54 23.14 7.01 87.66 0.61 23.75 16 13 O -0.58 -27.59 15.09 -3.05 -0.05 -27.63 16 14 C 0.04 2.08 1.94 -13.03 -0.03 2.06 16 15 H 0.05 2.56 6.63 -2.39 -0.02 2.55 16 16 C -0.59 -29.64 7.45 25.60 0.19 -29.45 16 17 H 0.04 2.24 7.82 -2.91 -0.02 2.22 16 18 C 0.00 -0.17 5.45 84.66 0.46 0.29 16 19 N -0.92 -49.84 13.63 21.45 0.29 -49.55 16 20 Si 1.10 46.35 29.91 68.60 2.05 48.41 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 24 C -0.04 -2.08 4.17 -19.87 -0.08 -2.16 16 25 C -0.11 -4.88 8.32 22.27 0.19 -4.70 16 26 C -0.13 -5.12 10.05 22.27 0.22 -4.90 16 27 C -0.14 -4.80 10.05 22.27 0.22 -4.57 16 28 C -0.13 -4.54 10.05 22.27 0.22 -4.32 16 29 C -0.15 -6.24 9.51 22.27 0.21 -6.03 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.76 7.45 -2.39 -0.02 1.74 16 33 H 0.10 1.92 7.78 -2.39 -0.02 1.90 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 1.80 6.41 -2.39 -0.02 1.78 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.56 6.81 -2.39 -0.02 1.55 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.41 13.50 5.99 -92.71 -0.56 12.95 16 40 H 0.27 14.45 6.49 -92.71 -0.60 13.85 16 41 H 0.09 4.39 7.88 -2.91 -0.02 4.36 16 42 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 43 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.14 4.03 8.06 -2.92 -0.02 4.00 16 45 H 0.11 4.48 7.96 -2.91 -0.02 4.45 16 Total: -1.00 -66.03 376.15 5.78 -60.25 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.63 Total: 37.97 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 4.79 Total: -33.37 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -2.45 Total: -88.89 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.76 Total: -24.37 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.05 Total: 48.41 kcal Total: -66.03 5.78 -60.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456685536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.808 kcal (2) G-P(sol) polarization free energy of solvation -66.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds