Wall clock time and date at job start Tue Mar 31 2020 15:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 111.81123 * 2 1 4 4 C 1.57019 * 112.09070 * 233.17016 * 2 1 3 5 5 H 1.08996 * 117.07035 * 64.12041 * 4 2 1 6 6 C 1.55982 * 100.60517 * 297.39890 * 4 2 1 7 7 C 1.54612 * 104.46207 * 325.66952 * 6 4 2 8 8 C 1.55913 * 104.58575 * 0.32721 * 7 6 4 9 9 C 1.50702 * 115.85179 * 159.96430 * 8 7 6 10 10 O 1.21282 * 120.00115 * 241.01724 * 9 8 7 11 11 N 1.34772 * 119.99789 * 60.73918 * 9 8 7 12 12 C 1.39474 * 119.99670 * 175.01801 * 11 9 8 13 13 C 1.38603 * 119.57806 * 185.34601 * 12 11 9 14 14 C 1.40806 * 118.79444 * 179.97438 * 13 12 11 15 15 C 1.41548 * 120.99380 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99569 * 151.68184 * 15 14 13 17 17 C 1.40025 * 119.99903 * 331.67983 * 15 14 13 18 18 N 1.30736 * 120.00359 * 350.13442 * 17 15 14 19 19 Si 1.86806 * 119.99882 * 170.12730 * 17 15 14 20 20 H 1.48508 * 109.46858 * 60.00524 * 19 17 15 21 21 H 1.48504 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47444 * 300.00508 * 19 17 15 23 23 C 1.41177 * 118.00787 * 0.02562 * 14 13 12 24 24 C 1.37587 * 119.01483 * 359.97438 * 23 14 13 25 25 N 1.32079 * 121.11077 * 359.72663 * 24 23 14 26 26 C 1.53524 * 104.56022 * 288.73593 * 8 7 6 27 27 O 1.20758 * 127.32990 * 250.91892 * 26 8 7 28 28 C 1.54051 * 104.42632 * 70.67495 * 26 8 7 29 29 H 1.08999 * 109.46634 * 293.16194 * 1 2 3 30 30 H 1.08997 * 109.46944 * 53.16628 * 1 2 3 31 31 H 1.08993 * 109.46760 * 173.16615 * 1 2 3 32 32 H 1.09001 * 109.47290 * 186.83463 * 3 2 1 33 33 H 1.09000 * 109.47252 * 306.83760 * 3 2 1 34 34 H 1.09009 * 109.47157 * 66.83234 * 3 2 1 35 35 H 1.08995 * 110.43826 * 206.91730 * 6 4 2 36 36 H 1.09004 * 110.43363 * 84.40807 * 6 4 2 37 37 H 1.09000 * 110.41011 * 241.54948 * 7 6 4 38 38 H 1.08999 * 110.51196 * 119.15635 * 7 6 4 39 39 H 0.97000 * 120.00402 * 355.01396 * 11 9 8 40 40 H 1.07997 * 120.59986 * 359.97438 * 13 12 11 41 41 H 0.97001 * 120.00520 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.48872 * 180.02562 * 23 14 13 43 43 H 1.08001 * 119.44079 * 180.02562 * 24 23 14 44 44 H 1.09001 * 110.04450 * 241.10174 * 28 26 8 45 45 H 1.09006 * 110.58493 * 118.97022 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0985 1.4205 0.0000 4 6 2.1205 -0.8721 -1.1645 5 1 1.9145 -0.5442 -2.1834 6 6 1.5747 -2.2802 -0.7739 7 6 1.5802 -2.2810 0.7722 8 6 2.1201 -0.8718 1.1638 9 6 1.8035 -0.4124 2.5637 10 8 1.1447 0.5908 2.7383 11 7 2.2478 -1.1195 3.6216 12 6 2.0447 -0.6402 4.9156 13 6 2.6008 -1.3158 5.9905 14 6 2.3858 -0.8171 7.2896 15 6 2.9323 -1.4697 8.4205 16 1 3.1698 -0.9029 9.3086 17 6 3.1651 -2.8501 8.3878 18 7 2.7047 -3.5674 7.3965 19 14 4.1337 -3.6667 9.7605 20 1 3.4369 -3.4510 11.0541 21 1 4.2405 -5.1234 9.4922 22 1 5.4941 -3.0750 9.8264 23 6 1.6088 0.3532 7.4304 24 6 1.0978 0.9545 6.3033 25 7 1.3276 0.4581 5.1011 26 6 3.6096 -0.9127 0.7938 27 8 4.5512 -0.9435 1.5492 28 6 3.6225 -0.9116 -0.7467 29 1 -0.3632 0.4042 0.9448 30 1 -0.3633 0.6161 -0.8225 31 1 -0.3632 -1.0203 -0.1223 32 1 3.1808 1.3787 -0.1223 33 1 1.6615 1.9867 -0.8225 34 1 1.8581 1.9081 0.9449 35 1 2.2300 -3.0622 -1.1573 36 1 0.5607 -2.4133 -1.1509 37 1 2.2424 -3.0603 1.1496 38 1 0.5704 -2.4219 1.1576 39 1 2.7086 -1.9617 3.4831 40 1 3.1884 -2.2084 5.8344 41 1 2.8662 -4.5235 7.3736 42 1 1.4190 0.7706 8.4082 43 1 0.5028 1.8503 6.4030 44 1 4.0955 -1.8211 -1.1169 45 1 4.1445 -0.0325 -1.1249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521259931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:36 Heat of formation + Delta-G solvation = -28.192055 kcal Electronic energy + Delta-G solvation = -28791.242103 eV Core-core repulsion = 24966.759310 eV Total energy + Delta-G solvation = -3824.482792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76917 -39.13665 -38.01776 -37.44423 -34.31366 -33.72394 -31.99551 -30.86891 -30.49046 -29.63155 -28.09664 -26.50404 -25.96054 -24.26697 -22.45154 -21.89457 -21.59618 -20.30657 -19.05800 -18.60332 -17.57934 -16.98703 -15.93252 -15.79909 -15.71123 -15.29148 -14.92324 -14.33155 -14.21101 -14.15761 -14.11610 -13.74790 -13.44308 -13.13823 -13.01084 -12.66457 -12.57798 -12.48894 -12.36049 -12.13787 -11.95729 -11.75412 -11.54327 -11.39143 -11.22998 -11.18979 -10.89787 -10.73041 -10.58057 -10.34572 -10.25825 -10.14429 -9.70098 -9.53560 -9.35177 -9.13324 -7.93877 -7.71943 -7.01088 -6.73383 -4.60159 1.81123 2.51218 2.82899 3.02934 3.06086 3.16624 3.36162 3.55452 3.81515 3.88254 4.08671 4.24046 4.36153 4.71054 4.73392 4.81924 4.88598 4.95589 5.07069 5.18536 5.28354 5.30718 5.40470 5.55060 5.66116 5.68742 5.71691 5.73597 5.77369 5.88851 5.92823 5.96833 6.00902 6.09302 6.39654 6.42843 6.60334 6.67361 6.81233 6.98123 7.14086 7.35894 7.40100 7.48274 7.79434 7.96680 8.23449 8.43776 8.72135 8.77753 8.88752 9.68593 10.13591 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.003527 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.523927 B = 7937.867291 C = 8713.761487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 C -0.148 4.148 4 C -0.090 4.090 5 H 0.115 0.885 6 C -0.122 4.122 7 C -0.106 4.106 8 C -0.152 4.152 9 C 0.533 3.467 10 O -0.469 6.469 11 N -0.648 5.648 12 C 0.336 3.664 13 C -0.234 4.234 14 C 0.144 3.856 15 C -0.458 4.458 16 H 0.081 0.919 17 C 0.077 3.923 18 N -0.797 5.797 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.281 4.281 24 C 0.117 3.883 25 N -0.551 5.551 26 C 0.377 3.623 27 O -0.423 6.423 28 C -0.170 4.170 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.407 0.593 40 H 0.129 0.871 41 H 0.281 0.719 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 -0.645 -17.839 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.205 4.205 4 C -0.108 4.108 5 H 0.133 0.867 6 C -0.159 4.159 7 C -0.144 4.144 8 C -0.156 4.156 9 C 0.317 3.683 10 O -0.339 6.339 11 N -0.293 5.293 12 C 0.112 3.888 13 C -0.259 4.259 14 C 0.136 3.864 15 C -0.490 4.490 16 H 0.099 0.901 17 C -0.141 4.141 18 N -0.423 5.423 19 Si 0.738 3.262 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.305 4.305 24 C -0.038 4.038 25 N -0.270 5.270 26 C 0.249 3.751 27 O -0.293 6.293 28 C -0.208 4.208 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.242 0.758 40 H 0.147 0.853 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.141 0.859 44 H 0.116 0.884 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.052 0.256 -18.188 18.221 hybrid contribution 1.040 -1.489 1.376 2.278 sum -0.012 -1.233 -16.813 16.858 Atomic orbital electron populations 1.21776 0.92614 1.01970 1.03338 1.22199 0.96292 0.93950 0.90496 1.21855 0.99895 0.94998 1.03739 1.23651 0.92940 0.95500 0.98723 0.86690 1.22729 1.02054 0.96604 0.94540 1.22494 1.02500 0.92940 0.96423 1.23911 0.97345 0.99381 0.95006 1.19355 0.80472 0.84367 0.84141 1.90743 1.34829 1.23550 1.84769 1.43349 1.57288 1.24420 1.04233 1.18187 0.95321 0.92223 0.83071 1.21612 1.08455 1.04800 0.91073 1.17572 0.87102 0.89501 0.92230 1.19529 1.37034 0.92578 0.99812 0.90092 1.25922 0.93628 0.97718 0.96871 1.69733 1.34760 1.07927 1.29897 0.86271 0.80743 0.77969 0.81171 1.18915 1.20275 1.18786 1.21939 1.07607 1.02949 0.97998 1.21758 0.96981 0.97524 0.87531 1.67198 1.21232 1.13294 1.25289 1.25682 0.88846 0.68908 0.91640 1.90485 1.43422 1.36100 1.59273 1.23470 0.98692 1.04485 0.94123 0.90546 0.92351 0.92241 0.93140 0.91974 0.90300 0.90975 0.90469 0.90818 0.89588 0.75835 0.85335 0.90784 0.87950 0.85872 0.88373 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.46 37.16 0.31 -1.24 16 2 C -0.03 -0.32 0.57 -150.20 -0.09 -0.41 16 3 C -0.15 -1.77 8.51 37.16 0.32 -1.46 16 4 C -0.09 -0.71 4.56 -85.27 -0.39 -1.10 16 5 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.12 -0.93 5.56 -24.29 -0.14 -1.06 16 7 C -0.11 -1.14 5.19 -24.33 -0.13 -1.27 16 8 C -0.15 -2.10 0.69 -151.70 -0.11 -2.21 16 9 C 0.53 10.30 6.84 -10.99 -0.08 10.22 16 10 O -0.47 -10.42 11.96 5.56 0.07 -10.35 16 11 N -0.65 -13.62 5.39 -11.49 -0.06 -13.69 16 12 C 0.34 8.46 7.42 -154.70 -1.15 7.31 16 13 C -0.23 -6.16 8.59 -38.48 -0.33 -6.49 16 14 C 0.14 3.89 5.58 -106.55 -0.59 3.29 16 15 C -0.46 -12.04 9.13 -37.65 -0.34 -12.39 16 16 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 17 C 0.08 1.89 5.30 -17.35 -0.09 1.80 16 18 N -0.80 -20.13 10.84 55.55 0.60 -19.52 16 19 Si 0.91 18.42 29.57 -169.99 -5.03 13.39 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.28 -7.03 9.90 -38.70 -0.38 -7.42 16 24 C 0.12 2.84 11.15 -17.68 -0.20 2.65 16 25 N -0.55 -14.25 7.85 -12.52 -0.10 -14.35 16 26 C 0.38 5.17 6.06 -25.91 -0.16 5.01 16 27 O -0.42 -7.40 17.87 6.00 0.11 -7.29 16 28 C -0.17 -1.52 5.48 -24.60 -0.13 -1.66 16 29 H 0.08 1.10 6.75 -51.93 -0.35 0.75 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.58 5.40 -51.93 -0.28 0.30 16 32 H 0.05 0.58 5.82 -51.93 -0.30 0.27 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.22 6.70 -51.92 -0.35 0.87 16 35 H 0.07 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.08 0.51 7.21 -51.93 -0.37 0.14 16 37 H 0.07 0.76 8.02 -51.93 -0.42 0.35 16 38 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 39 H 0.41 7.65 8.70 -40.82 -0.36 7.29 16 40 H 0.13 3.40 6.27 -52.49 -0.33 3.07 16 41 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 42 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 44 H 0.10 0.71 7.84 -51.93 -0.41 0.31 16 45 H 0.10 0.80 7.26 -51.93 -0.38 0.42 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -32.16 355.88 -8.72 -40.88 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.00 Total: 11.98 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -3.67 Total: -6.41 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.44 Total: -47.56 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.16 -8.72 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521259931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.689 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds