Wall clock time and date at job start Tue Mar 31 2020 15:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 111.81123 * 2 1 4 4 C 1.57019 * 112.09070 * 233.17016 * 2 1 3 5 5 H 1.08996 * 117.07035 * 64.12041 * 4 2 1 6 6 C 1.55982 * 100.60517 * 297.39890 * 4 2 1 7 7 C 1.54612 * 104.46207 * 325.66952 * 6 4 2 8 8 C 1.55913 * 104.58575 * 0.32721 * 7 6 4 9 9 C 1.50702 * 115.85179 * 159.96430 * 8 7 6 10 10 O 1.21282 * 120.00115 * 241.01724 * 9 8 7 11 11 N 1.34772 * 119.99789 * 60.73918 * 9 8 7 12 12 C 1.39474 * 119.99670 * 175.01801 * 11 9 8 13 13 C 1.38603 * 119.57806 * 185.34601 * 12 11 9 14 14 C 1.40806 * 118.79444 * 179.97438 * 13 12 11 15 15 C 1.41548 * 120.99380 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99569 * 151.68184 * 15 14 13 17 17 C 1.40025 * 119.99903 * 331.67983 * 15 14 13 18 18 N 1.30736 * 120.00359 * 350.13442 * 17 15 14 19 19 Si 1.86806 * 119.99882 * 170.12730 * 17 15 14 20 20 H 1.48508 * 109.46858 * 60.00524 * 19 17 15 21 21 H 1.48504 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47444 * 300.00508 * 19 17 15 23 23 C 1.41177 * 118.00787 * 0.02562 * 14 13 12 24 24 C 1.37587 * 119.01483 * 359.97438 * 23 14 13 25 25 N 1.32079 * 121.11077 * 359.72663 * 24 23 14 26 26 C 1.53524 * 104.56022 * 288.73593 * 8 7 6 27 27 O 1.20758 * 127.32990 * 250.91892 * 26 8 7 28 28 C 1.54051 * 104.42632 * 70.67495 * 26 8 7 29 29 H 1.08999 * 109.46634 * 293.16194 * 1 2 3 30 30 H 1.08997 * 109.46944 * 53.16628 * 1 2 3 31 31 H 1.08993 * 109.46760 * 173.16615 * 1 2 3 32 32 H 1.09001 * 109.47290 * 186.83463 * 3 2 1 33 33 H 1.09000 * 109.47252 * 306.83760 * 3 2 1 34 34 H 1.09009 * 109.47157 * 66.83234 * 3 2 1 35 35 H 1.08995 * 110.43826 * 206.91730 * 6 4 2 36 36 H 1.09004 * 110.43363 * 84.40807 * 6 4 2 37 37 H 1.09000 * 110.41011 * 241.54948 * 7 6 4 38 38 H 1.08999 * 110.51196 * 119.15635 * 7 6 4 39 39 H 0.97000 * 120.00402 * 355.01396 * 11 9 8 40 40 H 1.07997 * 120.59986 * 359.97438 * 13 12 11 41 41 H 0.97001 * 120.00520 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.48872 * 180.02562 * 23 14 13 43 43 H 1.08001 * 119.44079 * 180.02562 * 24 23 14 44 44 H 1.09001 * 110.04450 * 241.10174 * 28 26 8 45 45 H 1.09006 * 110.58493 * 118.97022 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0985 1.4205 0.0000 4 6 2.1205 -0.8721 -1.1645 5 1 1.9145 -0.5442 -2.1834 6 6 1.5747 -2.2802 -0.7739 7 6 1.5802 -2.2810 0.7722 8 6 2.1201 -0.8718 1.1638 9 6 1.8035 -0.4124 2.5637 10 8 1.1447 0.5908 2.7383 11 7 2.2478 -1.1195 3.6216 12 6 2.0447 -0.6402 4.9156 13 6 2.6008 -1.3158 5.9905 14 6 2.3858 -0.8171 7.2896 15 6 2.9323 -1.4697 8.4205 16 1 3.1698 -0.9029 9.3086 17 6 3.1651 -2.8501 8.3878 18 7 2.7047 -3.5674 7.3965 19 14 4.1337 -3.6667 9.7605 20 1 3.4369 -3.4510 11.0541 21 1 4.2405 -5.1234 9.4922 22 1 5.4941 -3.0750 9.8264 23 6 1.6088 0.3532 7.4304 24 6 1.0978 0.9545 6.3033 25 7 1.3276 0.4581 5.1011 26 6 3.6096 -0.9127 0.7938 27 8 4.5512 -0.9435 1.5492 28 6 3.6225 -0.9116 -0.7467 29 1 -0.3632 0.4042 0.9448 30 1 -0.3633 0.6161 -0.8225 31 1 -0.3632 -1.0203 -0.1223 32 1 3.1808 1.3787 -0.1223 33 1 1.6615 1.9867 -0.8225 34 1 1.8581 1.9081 0.9449 35 1 2.2300 -3.0622 -1.1573 36 1 0.5607 -2.4133 -1.1509 37 1 2.2424 -3.0603 1.1496 38 1 0.5704 -2.4219 1.1576 39 1 2.7086 -1.9617 3.4831 40 1 3.1884 -2.2084 5.8344 41 1 2.8662 -4.5235 7.3736 42 1 1.4190 0.7706 8.4082 43 1 0.5028 1.8503 6.4030 44 1 4.0955 -1.8211 -1.1169 45 1 4.1445 -0.0325 -1.1249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521259931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:36 Heat of formation + Delta-G solvation = -47.578477 kcal Electronic energy + Delta-G solvation = -28792.082761 eV Core-core repulsion = 24966.759310 eV Total energy + Delta-G solvation = -3825.323451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.77883 -40.86532 -39.35524 -38.94986 -36.15891 -35.53792 -32.88779 -32.52852 -31.74199 -30.88684 -29.60776 -27.94921 -27.39572 -25.17750 -24.01861 -23.81739 -22.44178 -21.98156 -20.10624 -19.89127 -19.37981 -18.23752 -17.55235 -17.05865 -16.83492 -16.71472 -16.32024 -16.11109 -15.75306 -15.64982 -15.30748 -15.15005 -14.75116 -14.38589 -14.37895 -14.26458 -14.03369 -13.70447 -13.31116 -13.22531 -13.09680 -12.96100 -12.90858 -12.72524 -12.59445 -12.30067 -12.15406 -11.98402 -11.95730 -11.61681 -11.50182 -11.29166 -11.26188 -11.20407 -10.87605 -10.35581 -9.96168 -9.64348 -8.92628 -8.63459 -6.62583 0.65083 0.78232 0.95821 1.37498 1.49405 1.51121 1.74298 2.04838 2.17653 2.76004 2.84446 3.16968 3.37299 3.47536 3.64374 3.69460 3.93467 4.01959 4.15415 4.16284 4.24598 4.40827 4.43216 4.44574 4.70255 4.72329 4.76461 4.83633 4.85926 4.86307 4.90360 5.01431 5.02578 5.03963 5.11767 5.17803 5.18594 5.21626 5.35543 5.42016 5.45749 5.53127 5.60795 5.86608 6.06962 6.33167 6.40498 6.52872 6.74395 6.79223 7.22189 7.74730 8.26640 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.003527 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.523927 B = 7937.867291 C = 8713.761487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 C -0.147 4.147 4 C -0.063 4.063 5 H 0.158 0.842 6 C -0.114 4.114 7 C -0.107 4.107 8 C -0.167 4.167 9 C 0.524 3.476 10 O -0.504 6.504 11 N -0.650 5.650 12 C 0.332 3.668 13 C -0.257 4.257 14 C 0.116 3.884 15 C -0.488 4.488 16 H 0.086 0.914 17 C 0.036 3.964 18 N -0.821 5.821 19 Si 0.991 3.009 20 H -0.257 1.257 21 H -0.265 1.265 22 H -0.261 1.261 23 C -0.294 4.294 24 C 0.112 3.888 25 N -0.573 5.573 26 C 0.371 3.629 27 O -0.475 6.475 28 C -0.159 4.159 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.413 0.587 40 H 0.119 0.881 41 H 0.291 0.709 42 H 0.119 0.881 43 H 0.153 0.847 44 H 0.128 0.872 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 -2.018 -20.772 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.033 4.033 3 C -0.204 4.204 4 C -0.081 4.081 5 H 0.176 0.824 6 C -0.151 4.151 7 C -0.145 4.145 8 C -0.171 4.171 9 C 0.311 3.689 10 O -0.376 6.376 11 N -0.296 5.296 12 C 0.107 3.893 13 C -0.283 4.283 14 C 0.108 3.892 15 C -0.519 4.519 16 H 0.104 0.896 17 C -0.180 4.180 18 N -0.447 5.447 19 Si 0.811 3.189 20 H -0.181 1.181 21 H -0.189 1.189 22 H -0.185 1.185 23 C -0.318 4.318 24 C -0.042 4.042 25 N -0.293 5.293 26 C 0.247 3.753 27 O -0.348 6.348 28 C -0.196 4.196 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.249 0.751 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.137 0.863 43 H 0.170 0.830 44 H 0.146 0.854 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.745 -1.120 -21.169 21.212 hybrid contribution 0.866 -1.019 2.305 2.665 sum 0.121 -2.139 -18.864 18.985 Atomic orbital electron populations 1.21737 0.92548 1.03120 1.01884 1.22350 0.96383 0.93611 0.90968 1.21836 1.00437 0.95758 1.02334 1.23761 0.91128 0.94225 0.98995 0.82410 1.22787 1.04026 0.97226 0.91065 1.22602 1.01623 0.90628 0.99620 1.24049 0.98958 1.02266 0.91847 1.20436 0.79084 0.83552 0.85868 1.90711 1.36172 1.24947 1.85748 1.43507 1.57545 1.24974 1.03549 1.18469 0.94420 0.91792 0.84657 1.21573 1.09815 1.05187 0.91682 1.18010 0.87790 0.90531 0.92883 1.19859 1.38222 0.93874 0.99945 0.89633 1.26860 0.93963 0.97668 0.99533 1.69793 1.34791 1.08720 1.31417 0.85117 0.78854 0.77207 0.77720 1.18118 1.18933 1.18487 1.22136 1.07815 1.02842 0.99019 1.22269 0.96652 0.98160 0.87113 1.67342 1.22076 1.13867 1.26008 1.26439 0.87659 0.66961 0.94268 1.90465 1.44521 1.38665 1.61197 1.23555 1.00233 1.06702 0.89149 0.95009 0.89852 0.90674 0.92766 0.89127 0.94931 0.88412 0.88501 0.90889 0.90587 0.75103 0.86317 0.89820 0.86274 0.82950 0.85409 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.46 71.98 0.61 -2.20 16 2 C -0.03 -0.67 0.57 -49.39 -0.03 -0.70 16 3 C -0.15 -3.38 8.51 71.98 0.61 -2.76 16 4 C -0.06 -0.67 4.56 -7.33 -0.03 -0.70 16 5 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 6 C -0.11 -1.19 5.56 32.18 0.18 -1.01 16 7 C -0.11 -2.15 5.19 32.15 0.17 -1.99 16 8 C -0.17 -4.62 0.69 -50.37 -0.03 -4.65 16 9 C 0.52 21.46 6.84 87.66 0.60 22.06 16 10 O -0.50 -23.93 11.96 -3.03 -0.04 -23.97 16 11 N -0.65 -29.25 5.39 -308.65 -1.66 -30.91 16 12 C 0.33 17.76 7.42 132.75 0.98 18.74 16 13 C -0.26 -14.36 8.59 22.99 0.20 -14.16 16 14 C 0.12 6.55 5.58 -21.11 -0.12 6.43 16 15 C -0.49 -26.47 9.13 23.52 0.21 -26.26 16 16 H 0.09 4.40 7.87 -2.91 -0.02 4.37 16 17 C 0.04 1.79 5.30 85.29 0.45 2.24 16 18 N -0.82 -42.46 10.84 21.84 0.24 -42.22 16 19 Si 0.99 37.65 29.57 68.60 2.03 39.68 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 21 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 C -0.29 -15.30 9.90 22.84 0.23 -15.08 16 24 C 0.11 5.67 11.15 84.50 0.94 6.61 16 25 N -0.57 -31.22 7.85 -193.53 -1.52 -32.74 16 26 C 0.37 9.92 6.06 31.13 0.19 10.11 16 27 O -0.47 -17.13 17.87 -1.44 -0.03 -17.16 16 28 C -0.16 -2.19 5.48 31.97 0.18 -2.01 16 29 H 0.03 0.94 6.75 -2.39 -0.02 0.92 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.28 5.40 -2.39 -0.01 1.27 16 32 H 0.05 1.17 5.82 -2.39 -0.01 1.16 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 1.04 6.70 -2.38 -0.02 1.03 16 35 H 0.10 0.64 7.85 -2.39 -0.02 0.62 16 36 H 0.10 0.73 7.21 -2.39 -0.02 0.71 16 37 H 0.07 1.45 8.02 -2.39 -0.02 1.43 16 38 H 0.08 1.66 7.57 -2.39 -0.02 1.65 16 39 H 0.41 16.79 8.70 -92.71 -0.81 15.99 16 40 H 0.12 6.71 6.27 -2.91 -0.02 6.69 16 41 H 0.29 13.50 8.29 -92.71 -0.77 12.73 16 42 H 0.12 5.60 8.06 -2.91 -0.02 5.58 16 43 H 0.15 6.59 8.06 -2.91 -0.02 6.56 16 44 H 0.13 1.15 7.84 -2.39 -0.02 1.13 16 45 H 0.12 1.34 7.26 -2.38 -0.02 1.32 16 Total: -1.00 -77.25 355.88 4.59 -72.66 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: 0.23 Total: 39.98 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.33 Total: -5.32 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -2.95 Total: -105.87 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.06 Total: -41.13 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -77.25 4.59 -72.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521259931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.086 kcal (2) G-P(sol) polarization free energy of solvation -77.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds