Wall clock time and date at job start Tue Mar 31 2020 15:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37839 * 119.40160 * 2 1 4 4 C 1.39463 * 119.35442 * 180.25593 * 3 2 1 5 5 N 1.39014 * 120.88498 * 179.75257 * 4 3 2 6 6 C 1.46504 * 119.99316 * 359.71893 * 5 4 3 7 7 C 1.53006 * 109.46883 * 179.97438 * 6 5 4 8 8 C 1.47201 * 109.47093 * 180.02562 * 7 6 5 9 9 N 7.32814 * 104.37676 * 359.73510 * 2 1 3 10 10 C 1.40270 * 118.23852 * 359.47980 * 4 3 2 11 11 C 1.48279 * 120.61599 * 180.29299 * 10 4 3 12 12 N 1.34111 * 126.68088 * 0.02838 * 11 10 4 13 13 N 1.28984 * 107.25978 * 180.02562 * 12 11 10 14 14 N 1.28729 * 108.96174 * 359.97438 * 13 12 11 15 15 H 0.97004 * 125.33426 * 180.02562 * 14 13 12 16 16 N 1.28872 * 109.33724 * 359.73013 * 14 13 12 17 17 C 1.39897 * 118.76880 * 0.27397 * 10 4 3 18 18 N 1.38820 * 119.74886 * 179.97438 * 17 10 4 19 19 C 1.46503 * 120.00085 * 180.02562 * 18 17 10 20 20 C 1.50694 * 109.47420 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99713 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00297 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00070 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00243 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47209 * 89.99976 * 24 22 20 26 26 H 1.48497 * 109.47188 * 209.99699 * 24 22 20 27 27 H 1.48497 * 109.47000 * 330.00320 * 24 22 20 28 28 N 1.32084 * 119.39628 * 179.72843 * 2 1 3 29 29 H 1.09004 * 109.46920 * 270.28054 * 1 2 3 30 30 H 1.08999 * 109.47075 * 30.27188 * 1 2 3 31 31 H 1.08996 * 109.47751 * 150.27259 * 1 2 3 32 32 H 1.08001 * 120.32188 * 0.02562 * 3 2 1 33 33 H 0.96992 * 120.00718 * 179.72261 * 5 4 3 34 34 H 1.09001 * 109.46891 * 60.00383 * 6 5 4 35 35 H 1.08993 * 109.47378 * 299.99755 * 6 5 4 36 36 H 1.09001 * 109.46801 * 300.00349 * 7 6 5 37 37 H 1.09001 * 109.46998 * 59.99945 * 7 6 5 38 38 H 0.96993 * 120.00322 * 359.97438 * 18 17 10 39 39 H 1.09002 * 109.46800 * 299.99995 * 19 18 17 40 40 H 1.09000 * 109.46983 * 59.99614 * 19 18 17 41 41 H 0.96999 * 120.00289 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1836 1.2009 0.0000 4 6 3.5783 1.1997 -0.0054 5 7 4.2928 2.3921 -0.0107 6 6 3.5808 3.6725 -0.0169 7 6 4.5938 4.8193 -0.0213 8 6 3.8785 6.1058 -0.0269 9 7 3.3265 7.0986 -0.0328 10 6 4.2409 -0.0366 0.0005 11 6 5.7224 -0.0992 0.0017 12 7 6.5683 0.9415 -0.0019 13 7 7.7655 0.4615 0.0002 14 7 7.7008 -0.8241 0.0055 15 1 8.4629 -1.4242 0.0084 16 7 6.4649 -1.1891 0.0125 17 6 3.4782 -1.2093 0.0057 18 7 4.1131 -2.4438 0.0111 19 6 3.3197 -3.6755 0.0159 20 6 4.2421 -4.8672 0.0206 21 1 5.3122 -4.7217 0.0204 22 6 3.7199 -6.1431 0.0262 23 7 2.4167 -6.3203 0.0279 24 14 4.8632 -7.6203 0.0327 25 1 5.1662 -8.0057 1.4345 26 1 4.2074 -8.7570 -0.6623 27 1 6.1251 -7.2727 -0.6688 28 7 2.1553 -1.1508 0.0055 29 1 -0.3633 0.0050 1.0277 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3634 -0.8923 -0.5096 32 1 1.6391 2.1336 0.0004 33 1 5.2626 2.3765 -0.0104 34 1 2.9550 3.7445 0.8726 35 1 2.9555 3.7363 -0.9074 36 1 5.2188 4.7553 0.8694 37 1 5.2201 4.7474 -0.9105 38 1 5.0818 -2.4911 0.0108 39 1 2.6907 -3.6989 0.9058 40 1 2.6913 -3.7063 -0.8741 41 1 2.0493 -7.2180 0.0315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592047686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:23 Heat of formation + Delta-G solvation = 192.314104 kcal Electronic energy + Delta-G solvation = -26916.362708 eV Core-core repulsion = 23062.486939 eV Total energy + Delta-G solvation = -3853.875769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.28589 -39.98850 -37.67088 -36.45373 -35.37444 -34.27871 -33.55311 -32.62822 -32.08489 -30.64252 -29.12441 -27.70775 -26.68795 -24.72647 -23.97368 -23.36983 -22.40347 -21.33699 -20.78217 -19.13130 -18.02068 -17.14992 -16.99020 -16.78985 -16.17411 -15.96802 -15.66350 -15.08534 -14.79663 -14.43375 -14.40850 -13.99917 -13.64956 -13.58964 -13.22422 -12.99688 -12.87420 -12.76945 -12.29275 -12.20996 -12.06611 -11.96894 -11.89014 -11.68119 -11.52055 -11.27644 -10.99879 -10.92276 -10.84802 -10.78602 -10.44061 -10.21645 -9.33985 -9.17431 -8.82205 -8.48892 -7.66352 -6.89617 -6.14146 -4.19422 1.09256 1.38385 2.15700 2.31839 2.36575 2.43040 2.62493 3.10383 3.23947 3.30152 3.32285 3.79836 4.01645 4.19475 4.33686 4.40864 4.41815 4.46088 4.63315 4.95076 4.98042 5.22060 5.34397 5.39677 5.43304 5.50871 5.57524 5.65798 5.87058 5.91652 5.95176 6.10698 6.29966 6.43116 6.52675 6.76213 7.17737 7.27584 7.38270 7.60347 7.64369 7.75488 8.00475 8.12051 8.32159 8.49079 8.80326 9.15207 9.45666 10.96002 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.003255 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.380488 B = 8601.072225 C =10478.398895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.239 3.761 3 C -0.335 4.335 4 C 0.334 3.666 5 N -0.730 5.730 6 C 0.127 3.873 7 C -0.038 4.038 8 C 0.213 3.787 9 N -0.432 5.432 10 C -0.255 4.255 11 C 0.270 3.730 12 N -0.309 5.309 13 N -0.049 5.049 14 N -0.225 5.225 15 H 0.474 0.526 16 N -0.318 5.318 17 C 0.480 3.520 18 N -0.680 5.680 19 C 0.254 3.746 20 C -0.541 4.541 21 H 0.060 0.940 22 C 0.065 3.935 23 N -0.884 5.884 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.274 1.274 28 N -0.567 5.567 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.417 0.583 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.411 0.589 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 17.015 -0.069 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 C -0.364 4.364 4 C 0.218 3.782 5 N -0.365 5.365 6 C 0.000 4.000 7 C -0.078 4.078 8 C -0.106 4.106 9 N -0.108 5.108 10 C -0.273 4.273 11 C -0.007 4.007 12 N -0.183 5.183 13 N -0.044 5.044 14 N -0.071 5.071 15 H 0.328 0.672 16 N -0.170 5.170 17 C 0.235 3.765 18 N -0.309 5.309 19 C 0.133 3.867 20 C -0.579 4.579 21 H 0.078 0.922 22 C -0.139 4.139 23 N -0.522 5.522 24 Si 0.728 3.272 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.199 1.199 28 N -0.289 5.289 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.261 0.739 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.255 0.745 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.980 17.729 -0.074 18.415 hybrid contribution 2.118 -1.149 0.027 2.410 sum 7.098 16.581 -0.047 18.036 Atomic orbital electron populations 1.20748 0.89352 1.03246 1.02990 1.20791 0.96172 0.87149 0.86235 1.20801 0.91276 0.99311 1.25046 1.17372 0.90816 0.84005 0.85983 1.44934 1.09984 1.01680 1.79928 1.21190 0.94085 0.81663 1.03035 1.19373 0.97342 0.84207 1.06898 1.28796 0.93943 0.94583 0.93268 1.81267 1.08797 1.11931 1.08834 1.16832 0.84495 0.92866 1.33105 1.23359 0.95649 0.83800 0.97897 1.75282 0.94663 1.26460 1.21920 1.78690 1.17758 0.93311 1.14683 1.47549 1.07277 1.05940 1.46336 0.67187 1.74567 0.90640 1.26469 1.25353 1.18156 0.87814 0.85362 0.85155 1.46135 1.10560 1.03169 1.70991 1.19151 0.91180 0.78407 0.97926 1.21233 0.93117 0.90745 1.52833 0.92165 1.24900 0.95201 0.98891 0.94868 1.69967 1.10614 1.22469 1.49155 0.86466 0.80589 0.81977 0.78165 1.20526 1.20999 1.19899 1.67372 1.06574 1.28429 1.26547 0.90307 0.90998 0.90180 0.85446 0.73942 0.90893 0.90887 0.86485 0.86478 0.74516 0.95249 0.95248 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.15 36.00 0.37 -0.91 16 2 C 0.24 3.76 6.77 -82.63 -0.56 3.20 16 3 C -0.34 -4.50 8.98 -39.27 -0.35 -4.86 16 4 C 0.33 4.72 6.69 -83.38 -0.56 4.16 16 5 N -0.73 -7.62 5.66 -58.29 -0.33 -7.95 16 6 C 0.13 0.87 4.90 -4.04 -0.02 0.86 16 7 C -0.04 -0.18 5.82 -29.51 -0.17 -0.35 16 8 C 0.21 1.62 15.43 -20.76 -0.32 1.30 16 9 N -0.43 -4.73 18.54 42.15 0.78 -3.94 16 10 C -0.25 -4.37 5.92 -104.38 -0.62 -4.98 16 11 C 0.27 4.30 7.88 -156.27 -1.23 3.07 16 12 N -0.31 -4.18 9.59 32.13 0.31 -3.87 16 13 N -0.05 -0.59 13.47 60.35 0.81 0.22 16 14 N -0.22 -2.53 7.90 60.35 0.48 -2.05 16 15 H 0.47 3.17 8.96 -340.35 -3.05 0.12 16 16 N -0.32 -4.91 9.36 32.15 0.30 -4.61 16 17 C 0.48 9.71 7.49 -154.89 -1.16 8.55 16 18 N -0.68 -15.16 5.63 -61.43 -0.35 -15.50 16 19 C 0.25 6.67 5.44 -5.20 -0.03 6.64 16 20 C -0.54 -14.75 9.28 -34.45 -0.32 -15.07 16 21 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.88 -25.59 13.29 55.43 0.74 -24.85 16 24 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 N -0.57 -11.30 9.46 -8.54 -0.08 -11.38 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.13 1.32 6.88 -52.49 -0.36 0.96 16 33 H 0.42 4.40 5.22 -40.82 -0.21 4.18 16 34 H 0.07 0.48 7.98 -51.93 -0.41 0.07 16 35 H 0.07 0.49 8.00 -51.93 -0.42 0.07 16 36 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.41 8.67 4.90 -40.82 -0.20 8.47 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -34.18 358.74 -9.17 -43.35 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.14 Total: 6.15 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -5.07 Total: 3.30 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: 2.66 Total: -73.95 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.18 -9.17 -43.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592047686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.666 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds