Wall clock time and date at job start Tue Mar 31 2020 15:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37839 * 119.40160 * 2 1 4 4 C 1.39463 * 119.35442 * 180.25593 * 3 2 1 5 5 N 1.39014 * 120.88498 * 179.75257 * 4 3 2 6 6 C 1.46504 * 119.99316 * 359.71893 * 5 4 3 7 7 C 1.53006 * 109.46883 * 179.97438 * 6 5 4 8 8 C 1.47201 * 109.47093 * 180.02562 * 7 6 5 9 9 N 7.32814 * 104.37676 * 359.73510 * 2 1 3 10 10 C 1.40270 * 118.23852 * 359.47980 * 4 3 2 11 11 C 1.48279 * 120.61599 * 180.29299 * 10 4 3 12 12 N 1.34111 * 126.68088 * 0.02838 * 11 10 4 13 13 N 1.28984 * 107.25978 * 180.02562 * 12 11 10 14 14 N 1.28729 * 108.96174 * 359.97438 * 13 12 11 15 15 H 0.97004 * 125.33426 * 180.02562 * 14 13 12 16 16 N 1.28872 * 109.33724 * 359.73013 * 14 13 12 17 17 C 1.39897 * 118.76880 * 0.27397 * 10 4 3 18 18 N 1.38820 * 119.74886 * 179.97438 * 17 10 4 19 19 C 1.46503 * 120.00085 * 180.02562 * 18 17 10 20 20 C 1.50694 * 109.47420 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99713 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00297 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00070 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00243 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47209 * 89.99976 * 24 22 20 26 26 H 1.48497 * 109.47188 * 209.99699 * 24 22 20 27 27 H 1.48497 * 109.47000 * 330.00320 * 24 22 20 28 28 N 1.32084 * 119.39628 * 179.72843 * 2 1 3 29 29 H 1.09004 * 109.46920 * 270.28054 * 1 2 3 30 30 H 1.08999 * 109.47075 * 30.27188 * 1 2 3 31 31 H 1.08996 * 109.47751 * 150.27259 * 1 2 3 32 32 H 1.08001 * 120.32188 * 0.02562 * 3 2 1 33 33 H 0.96992 * 120.00718 * 179.72261 * 5 4 3 34 34 H 1.09001 * 109.46891 * 60.00383 * 6 5 4 35 35 H 1.08993 * 109.47378 * 299.99755 * 6 5 4 36 36 H 1.09001 * 109.46801 * 300.00349 * 7 6 5 37 37 H 1.09001 * 109.46998 * 59.99945 * 7 6 5 38 38 H 0.96993 * 120.00322 * 359.97438 * 18 17 10 39 39 H 1.09002 * 109.46800 * 299.99995 * 19 18 17 40 40 H 1.09000 * 109.46983 * 59.99614 * 19 18 17 41 41 H 0.96999 * 120.00289 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1836 1.2009 0.0000 4 6 3.5783 1.1997 -0.0054 5 7 4.2928 2.3921 -0.0107 6 6 3.5808 3.6725 -0.0169 7 6 4.5938 4.8193 -0.0213 8 6 3.8785 6.1058 -0.0269 9 7 3.3265 7.0986 -0.0328 10 6 4.2409 -0.0366 0.0005 11 6 5.7224 -0.0992 0.0017 12 7 6.5683 0.9415 -0.0019 13 7 7.7655 0.4615 0.0002 14 7 7.7008 -0.8241 0.0055 15 1 8.4629 -1.4242 0.0084 16 7 6.4649 -1.1891 0.0125 17 6 3.4782 -1.2093 0.0057 18 7 4.1131 -2.4438 0.0111 19 6 3.3197 -3.6755 0.0159 20 6 4.2421 -4.8672 0.0206 21 1 5.3122 -4.7217 0.0204 22 6 3.7199 -6.1431 0.0262 23 7 2.4167 -6.3203 0.0279 24 14 4.8632 -7.6203 0.0327 25 1 5.1662 -8.0057 1.4345 26 1 4.2074 -8.7570 -0.6623 27 1 6.1251 -7.2727 -0.6688 28 7 2.1553 -1.1508 0.0055 29 1 -0.3633 0.0050 1.0277 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3634 -0.8923 -0.5096 32 1 1.6391 2.1336 0.0004 33 1 5.2626 2.3765 -0.0104 34 1 2.9550 3.7445 0.8726 35 1 2.9555 3.7363 -0.9074 36 1 5.2188 4.7553 0.8694 37 1 5.2201 4.7474 -0.9105 38 1 5.0818 -2.4911 0.0108 39 1 2.6907 -3.6989 0.9058 40 1 2.6913 -3.7063 -0.8741 41 1 2.0493 -7.2180 0.0315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592047686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:22 Heat of formation + Delta-G solvation = 167.636717 kcal Electronic energy + Delta-G solvation = -26917.432800 eV Core-core repulsion = 23062.486939 eV Total energy + Delta-G solvation = -3854.945861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.36022 -41.21881 -38.48063 -37.43797 -36.75132 -35.36854 -34.97898 -34.18924 -33.01734 -32.03508 -30.13466 -29.13352 -28.18856 -25.86852 -24.85612 -24.67472 -23.97532 -22.55604 -22.01037 -20.16393 -19.00965 -18.67621 -18.05367 -17.88663 -17.51053 -16.88636 -16.67986 -16.50056 -16.14324 -15.77898 -15.69223 -15.04304 -14.59168 -14.53307 -14.47253 -14.23564 -14.14415 -14.03118 -13.50621 -13.39588 -13.30751 -13.01182 -12.86910 -12.78254 -12.66831 -12.41721 -12.39451 -12.33001 -12.20443 -11.97954 -11.92943 -11.43594 -11.38781 -10.78641 -10.33562 -10.14327 -8.68679 -8.39494 -8.24166 -6.38768 -0.04859 0.28239 0.91636 1.41624 1.42600 1.44166 1.46599 1.54872 1.69746 1.85914 2.25166 2.38739 2.81082 2.86881 3.08682 3.14659 3.20448 3.30216 3.78755 3.92575 4.22678 4.23622 4.28691 4.41503 4.49390 4.59770 4.82216 4.85599 4.96189 4.97753 4.98704 5.04566 5.20172 5.23188 5.32107 5.42879 5.55365 5.67142 5.72774 5.93529 6.30200 6.47543 6.61105 6.75121 6.80846 6.96044 7.24786 7.30946 7.72362 8.87544 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.003255 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.380488 B = 8601.072225 C =10478.398895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.215 3.785 3 C -0.314 4.314 4 C 0.335 3.665 5 N -0.715 5.715 6 C 0.119 3.881 7 C -0.028 4.028 8 C 0.244 3.756 9 N -0.494 5.494 10 C -0.262 4.262 11 C 0.255 3.745 12 N -0.301 5.301 13 N -0.036 5.036 14 N -0.202 5.202 15 H 0.492 0.508 16 N -0.343 5.343 17 C 0.455 3.545 18 N -0.698 5.698 19 C 0.284 3.716 20 C -0.557 4.557 21 H 0.069 0.931 22 C 0.009 3.991 23 N -0.924 5.924 24 Si 0.977 3.023 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.260 1.260 28 N -0.614 5.614 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.167 0.833 33 H 0.418 0.582 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.414 0.586 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 18.850 -0.064 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.076 3.924 3 C -0.342 4.342 4 C 0.216 3.784 5 N -0.348 5.348 6 C -0.006 4.006 7 C -0.068 4.068 8 C -0.073 4.073 9 N -0.171 5.171 10 C -0.280 4.280 11 C -0.023 4.023 12 N -0.175 5.175 13 N -0.031 5.031 14 N -0.052 5.052 15 H 0.350 0.650 16 N -0.195 5.195 17 C 0.212 3.788 18 N -0.331 5.331 19 C 0.160 3.840 20 C -0.595 4.595 21 H 0.087 0.913 22 C -0.191 4.191 23 N -0.563 5.563 24 Si 0.801 3.199 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.184 1.184 28 N -0.338 5.338 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.185 0.815 33 H 0.262 0.738 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.259 0.741 39 H 0.009 0.991 40 H 0.009 0.991 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.833 19.680 -0.069 20.833 hybrid contribution 1.586 -1.504 0.027 2.186 sum 8.419 18.177 -0.042 20.032 Atomic orbital electron populations 1.20839 0.87103 1.04042 1.03956 1.21424 0.97775 0.86929 0.86270 1.21155 0.91133 0.99897 1.22019 1.17450 0.91243 0.84381 0.85331 1.45022 1.10126 1.01656 1.78013 1.21435 0.94696 0.80442 1.04048 1.19468 0.96677 0.81608 1.09048 1.29156 0.92516 0.94375 0.91286 1.81313 1.10716 1.13971 1.11130 1.16925 0.85292 0.92933 1.32868 1.23279 0.95524 0.84528 0.98987 1.75269 0.94528 1.25797 1.21940 1.78632 1.17091 0.93437 1.13971 1.47553 1.06832 1.06020 1.44817 0.64991 1.74477 0.92041 1.27171 1.25836 1.18400 0.88486 0.85464 0.86407 1.45730 1.10208 1.02741 1.74461 1.18432 0.90683 0.80633 0.94207 1.21585 0.93647 0.91471 1.52826 0.91298 1.25932 0.96881 1.02239 0.94045 1.70118 1.12798 1.23378 1.49963 0.85273 0.78574 0.77508 0.78562 1.19636 1.20600 1.18446 1.67315 1.07121 1.31190 1.28181 0.89177 0.87384 0.92113 0.81531 0.73812 0.89892 0.89876 0.84331 0.84320 0.74138 0.99148 0.99147 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.39 10.15 71.23 0.72 -1.67 16 2 C 0.22 6.75 6.77 42.42 0.29 7.04 16 3 C -0.31 -7.72 8.98 22.47 0.20 -7.52 16 4 C 0.33 8.82 6.69 38.79 0.26 9.08 16 5 N -0.72 -12.54 5.66 -338.32 -1.91 -14.45 16 6 C 0.12 1.14 4.90 86.38 0.42 1.56 16 7 C -0.03 -0.14 5.82 28.79 0.17 0.03 16 8 C 0.24 3.00 15.43 89.44 1.38 4.38 16 9 N -0.49 -9.99 18.54 20.01 0.37 -9.62 16 10 C -0.26 -8.97 5.92 -19.71 -0.12 -9.08 16 11 C 0.25 7.91 7.88 137.28 1.08 9.00 16 12 N -0.30 -7.51 9.59 -52.25 -0.50 -8.01 16 13 N -0.04 -0.79 13.47 37.02 0.50 -0.29 16 14 N -0.20 -4.22 7.90 37.02 0.29 -3.93 16 15 H 0.49 5.68 8.96 -347.52 -3.12 2.56 16 16 N -0.34 -10.44 9.36 -52.20 -0.49 -10.93 16 17 C 0.45 19.27 7.49 133.30 1.00 20.27 16 18 N -0.70 -33.05 5.63 -348.27 -1.96 -35.01 16 19 C 0.28 16.00 5.44 85.63 0.47 16.46 16 20 C -0.56 -31.63 9.28 25.60 0.24 -31.39 16 21 H 0.07 3.68 7.60 -2.91 -0.02 3.66 16 22 C 0.01 0.50 5.46 84.65 0.46 0.96 16 23 N -0.92 -55.64 13.29 21.45 0.28 -55.35 16 24 Si 0.98 43.03 29.54 68.60 2.03 45.06 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 27 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 28 N -0.61 -25.84 9.46 -180.93 -1.71 -27.55 16 29 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.11 1.69 8.07 -2.39 -0.02 1.67 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.17 2.71 6.88 -2.91 -0.02 2.69 16 33 H 0.42 7.40 5.22 -92.71 -0.48 6.92 16 34 H 0.08 0.72 7.98 -2.39 -0.02 0.70 16 35 H 0.08 0.72 8.00 -2.39 -0.02 0.70 16 36 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.41 18.26 4.90 -92.71 -0.45 17.81 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -80.09 358.74 0.55 -79.54 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -2.92 Total: 21.43 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.57 Total: 19.11 kcal Atomic # 7 Polarization: -160.01 SS G_CDS: -5.13 Total: -165.14 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -80.09 0.55 -79.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592047686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.180 kcal (2) G-P(sol) polarization free energy of solvation -80.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds