Wall clock time and date at job start Tue Mar 31 2020 15:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34633 * 125.90019 * 2 1 4 4 H 0.97003 * 124.80298 * 0.02562 * 3 2 1 5 5 C 1.36426 * 110.38173 * 180.02562 * 3 2 1 6 6 C 1.50706 * 125.45266 * 180.02562 * 5 3 2 7 7 N 1.46897 * 109.46801 * 85.00262 * 6 5 3 8 8 C 1.46902 * 110.99575 * 179.97438 * 7 6 5 9 9 H 1.08992 * 109.47442 * 34.99907 * 8 7 6 10 10 C 1.53003 * 109.47236 * 154.99956 * 8 7 6 11 11 C 1.50698 * 109.47100 * 295.00086 * 10 8 7 12 12 H 1.08004 * 119.99771 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00074 * 179.97438 * 11 10 8 14 14 N 1.31517 * 120.00051 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00140 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46967 * 89.99603 * 15 13 11 17 17 H 1.48492 * 109.47551 * 209.99896 * 15 13 11 18 18 H 1.48502 * 109.47028 * 330.00154 * 15 13 11 19 19 C 1.50703 * 109.47080 * 274.99786 * 8 7 6 20 20 C 1.38234 * 120.00005 * 319.72696 * 19 8 7 21 21 C 1.38241 * 119.99761 * 179.80995 * 20 19 8 22 22 C 1.38234 * 119.99996 * 0.39462 * 21 20 19 23 23 C 1.38237 * 120.00066 * 359.86562 * 22 21 20 24 24 C 1.38232 * 119.99979 * 359.94359 * 23 22 21 25 25 C 1.34435 * 109.08678 * 0.26667 * 5 3 2 26 26 C 1.37843 * 125.89730 * 180.02562 * 2 1 3 27 27 C 1.47107 * 127.02293 * 359.97438 * 26 2 1 28 28 O 1.21554 * 120.00018 * 359.97438 * 27 26 2 29 29 O 1.34784 * 120.00097 * 179.97438 * 27 26 2 30 30 H 1.09001 * 109.47203 * 89.97094 * 1 2 3 31 31 H 1.08997 * 109.47130 * 209.97626 * 1 2 3 32 32 H 1.09004 * 109.46888 * 329.97764 * 1 2 3 33 33 H 1.08999 * 109.46712 * 204.99747 * 6 5 3 34 34 H 1.08999 * 109.46969 * 325.00048 * 6 5 3 35 35 H 1.00896 * 111.00599 * 303.94901 * 7 6 5 36 36 H 1.09001 * 109.46967 * 54.99691 * 10 8 7 37 37 H 1.08992 * 109.47211 * 174.99693 * 10 8 7 38 38 H 0.96998 * 119.99846 * 179.97438 * 14 13 11 39 39 H 1.07996 * 119.99939 * 0.02562 * 20 19 8 40 40 H 1.07996 * 119.99701 * 180.23588 * 21 20 19 41 41 H 1.07997 * 119.99934 * 179.83040 * 22 21 20 42 42 H 1.07995 * 120.00012 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.00257 * 180.02562 * 24 23 22 44 44 H 1.07998 * 126.80827 * 179.71273 * 25 5 3 45 45 H 0.96704 * 117.00007 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2964 1.0906 0.0000 4 1 1.9759 2.0061 0.0004 5 6 3.6110 0.7256 -0.0006 6 6 4.7817 1.6746 -0.0002 7 7 5.0864 2.0756 1.3797 8 6 6.2254 3.0025 1.4192 9 1 6.2010 3.6457 0.5396 10 6 6.1400 3.8621 2.6821 11 6 4.9156 4.7378 2.6118 12 1 4.2633 4.6861 1.7526 13 6 4.6275 5.6042 3.6450 14 7 3.5587 6.3681 3.5839 15 14 5.7545 5.6920 5.1321 16 1 6.8051 6.7150 4.8973 17 1 4.9625 6.0623 6.3323 18 1 6.3922 4.3685 5.3488 19 6 7.5117 2.2174 1.4319 20 6 7.6102 1.0644 2.1881 21 6 8.7889 0.3422 2.1966 22 6 9.8716 0.7773 1.4555 23 6 9.7748 1.9333 0.7036 24 6 8.5949 2.6534 0.6919 25 6 3.6946 -0.6162 -0.0069 26 6 2.3152 -1.1166 -0.0005 27 6 1.8831 -2.5228 -0.0006 28 8 0.6984 -2.7946 0.0002 29 8 2.8010 -3.5098 -0.0016 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 5.6503 1.1801 -0.4350 34 1 4.5337 2.5577 -0.5890 35 1 4.2764 2.4785 1.8265 36 1 6.0748 3.2160 3.5575 37 1 7.0299 4.4869 2.7571 38 1 3.3559 6.9774 4.3109 39 1 6.7653 0.7261 2.7694 40 1 8.8647 -0.5607 2.7844 41 1 10.7933 0.2145 1.4644 42 1 10.6208 2.2735 0.1249 43 1 8.5191 3.5563 0.1041 44 1 4.5979 -1.2081 -0.0132 45 1 2.4689 -4.4181 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599964536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:44 Heat of formation + Delta-G solvation = -34.660669 kcal Electronic energy + Delta-G solvation = -27168.389539 eV Core-core repulsion = 23343.626247 eV Total energy + Delta-G solvation = -3824.763292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31900 -39.53088 -39.06283 -36.29730 -35.89798 -33.16301 -32.19283 -31.14487 -30.72607 -30.46111 -29.37394 -27.20059 -25.08130 -23.98798 -22.80024 -22.11552 -21.71668 -20.42672 -19.63422 -19.58021 -17.87410 -17.13106 -16.68485 -16.23475 -15.66418 -15.61834 -15.20845 -14.96755 -14.73567 -14.41831 -14.18121 -13.78142 -13.64790 -13.30816 -13.04553 -12.97762 -12.89878 -12.66270 -12.53840 -12.37967 -12.28695 -11.92557 -11.63832 -11.48144 -11.42831 -11.27789 -10.91171 -10.67256 -10.54552 -10.42395 -10.00713 -9.85101 -9.37990 -8.86607 -8.68670 -8.54833 -8.26735 -8.11965 -7.88377 -6.20475 -4.20219 1.50530 1.73185 1.79320 2.40462 2.95445 3.23421 3.31951 3.35256 3.36997 3.49461 4.17469 4.33981 4.68530 4.77731 4.97377 5.07797 5.18168 5.22993 5.29208 5.33565 5.41966 5.45797 5.51680 5.55160 5.60069 5.81456 5.87842 5.90294 5.91941 5.97123 6.07229 6.26787 6.28164 6.38655 6.48344 6.58512 6.78839 6.79457 6.85983 6.98864 7.01765 7.07201 7.13577 7.38661 7.42784 7.60118 7.68284 7.97390 8.08677 8.30642 8.78288 9.42269 10.91976 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.003907 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.761218 B = 7165.217620 C = 9543.811298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.123 3.877 3 N -0.536 5.536 4 H 0.420 0.580 5 C 0.025 3.975 6 C 0.126 3.874 7 N -0.675 5.675 8 C 0.137 3.863 9 H 0.048 0.952 10 C -0.010 4.010 11 C -0.527 4.527 12 H 0.069 0.931 13 C 0.073 3.927 14 N -0.899 5.899 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.061 4.061 20 C -0.087 4.087 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.239 4.239 27 C 0.561 3.439 28 O -0.537 6.537 29 O -0.513 6.513 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.035 0.965 35 H 0.361 0.639 36 H 0.029 0.971 37 H 0.020 0.980 38 H 0.265 0.735 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.149 0.851 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -13.720 -8.293 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.003 3.997 3 N -0.132 5.132 4 H 0.258 0.742 5 C -0.084 4.084 6 C -0.003 4.003 7 N -0.309 5.309 8 C 0.028 3.972 9 H 0.066 0.934 10 C -0.047 4.047 11 C -0.565 4.565 12 H 0.087 0.913 13 C -0.129 4.129 14 N -0.537 5.537 15 Si 0.705 3.295 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.187 1.187 19 C -0.062 4.062 20 C -0.105 4.105 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.149 4.149 26 C -0.247 4.247 27 C 0.409 3.591 28 O -0.430 6.430 29 O -0.324 6.324 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.183 0.817 36 H 0.047 0.953 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.167 0.833 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.631 -13.635 -8.056 16.054 hybrid contribution -0.137 0.869 0.523 1.024 sum 2.493 -12.766 -7.533 15.031 Atomic orbital electron populations 1.20617 0.86876 1.04546 1.03504 1.20505 0.93419 0.85391 1.00435 1.41630 1.06020 1.08706 1.56805 0.74183 1.20234 0.83763 0.94988 1.09374 1.20452 0.93073 0.94984 0.91828 1.60505 1.10576 1.45421 1.14370 1.20404 0.86508 0.90160 1.00132 0.93443 1.19741 0.97654 0.94593 0.92727 1.20978 1.08272 1.21315 1.05945 0.91334 1.24956 0.94919 0.94843 0.98182 1.69894 1.26098 1.24592 1.33147 0.86792 0.80966 0.79172 0.82524 1.20272 1.21347 1.18721 1.20184 0.95470 0.95194 0.95328 1.21081 0.97197 0.94274 0.97972 1.21148 0.93713 1.00010 0.99871 1.21009 0.98447 0.97251 0.98588 1.20989 0.97535 0.95907 1.00144 1.21057 0.93282 0.99805 0.99989 1.21752 0.95423 0.92286 1.05390 1.19202 0.93970 0.88368 1.23200 1.19841 0.82683 0.85412 0.71209 1.90831 1.18469 1.84702 1.48951 1.84620 1.42266 1.19259 1.86212 0.90275 0.88288 0.91113 0.89210 0.94654 0.81741 0.95283 0.96163 0.92571 0.85262 0.86766 0.87009 0.86850 0.86561 0.83327 0.73597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.90 36.00 0.36 -0.68 16 2 C 0.12 1.58 7.22 -81.51 -0.59 0.99 16 3 N -0.54 -6.69 5.89 -5.20 -0.03 -6.72 16 4 H 0.42 4.55 8.96 -40.82 -0.37 4.19 16 5 C 0.03 0.34 6.63 -81.89 -0.54 -0.20 16 6 C 0.13 1.79 6.00 -4.97 -0.03 1.76 16 7 N -0.67 -11.29 5.55 -109.22 -0.61 -11.90 16 8 C 0.14 2.50 2.19 -68.86 -0.15 2.34 16 9 H 0.05 0.88 7.66 -51.93 -0.40 0.48 16 10 C -0.01 -0.21 3.62 -27.88 -0.10 -0.31 16 11 C -0.53 -13.56 8.67 -34.44 -0.30 -13.86 16 12 H 0.07 1.85 7.73 -52.48 -0.41 1.45 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -26.04 13.96 55.43 0.77 -25.26 16 15 Si 0.88 20.93 27.47 -169.99 -4.67 16.27 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 19 C -0.06 -1.01 4.71 -104.62 -0.49 -1.50 16 20 C -0.09 -1.38 9.32 -39.58 -0.37 -1.75 16 21 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 22 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 23 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 24 C -0.12 -1.85 9.67 -39.58 -0.38 -2.24 16 25 C -0.12 -1.74 10.89 -37.49 -0.41 -2.15 16 26 C -0.24 -3.38 6.33 -103.01 -0.65 -4.03 16 27 C 0.56 7.68 8.32 34.33 0.29 7.96 16 28 O -0.54 -8.14 15.66 -19.31 -0.30 -8.44 16 29 O -0.51 -5.60 13.33 -40.72 -0.54 -6.14 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.16 6.51 -51.93 -0.34 0.82 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.23 8.00 -51.93 -0.42 0.81 16 34 H 0.04 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.36 6.76 7.20 -39.29 -0.28 6.47 16 36 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 37 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 2.12 7.73 -52.49 -0.41 1.72 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.12 1.63 8.04 -52.49 -0.42 1.21 16 44 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 45 H 0.41 2.42 9.11 45.56 0.42 2.83 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -31.31 382.28 -9.79 -41.10 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.51 Total: 13.55 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -4.66 Total: -18.20 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.14 Total: -43.89 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.85 Total: -14.59 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.31 -9.79 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599964536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.442 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds