Wall clock time and date at job start Tue Mar 31 2020 15:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34633 * 125.90019 * 2 1 4 4 H 0.97003 * 124.80298 * 0.02562 * 3 2 1 5 5 C 1.36426 * 110.38173 * 180.02562 * 3 2 1 6 6 C 1.50706 * 125.45266 * 180.02562 * 5 3 2 7 7 N 1.46897 * 109.46801 * 85.00262 * 6 5 3 8 8 C 1.46902 * 110.99575 * 179.97438 * 7 6 5 9 9 H 1.08992 * 109.47442 * 34.99907 * 8 7 6 10 10 C 1.53003 * 109.47236 * 154.99956 * 8 7 6 11 11 C 1.50698 * 109.47100 * 295.00086 * 10 8 7 12 12 H 1.08004 * 119.99771 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00074 * 179.97438 * 11 10 8 14 14 N 1.31517 * 120.00051 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00140 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46967 * 89.99603 * 15 13 11 17 17 H 1.48492 * 109.47551 * 209.99896 * 15 13 11 18 18 H 1.48502 * 109.47028 * 330.00154 * 15 13 11 19 19 C 1.50703 * 109.47080 * 274.99786 * 8 7 6 20 20 C 1.38234 * 120.00005 * 319.72696 * 19 8 7 21 21 C 1.38241 * 119.99761 * 179.80995 * 20 19 8 22 22 C 1.38234 * 119.99996 * 0.39462 * 21 20 19 23 23 C 1.38237 * 120.00066 * 359.86562 * 22 21 20 24 24 C 1.38232 * 119.99979 * 359.94359 * 23 22 21 25 25 C 1.34435 * 109.08678 * 0.26667 * 5 3 2 26 26 C 1.37843 * 125.89730 * 180.02562 * 2 1 3 27 27 C 1.47107 * 127.02293 * 359.97438 * 26 2 1 28 28 O 1.21554 * 120.00018 * 359.97438 * 27 26 2 29 29 O 1.34784 * 120.00097 * 179.97438 * 27 26 2 30 30 H 1.09001 * 109.47203 * 89.97094 * 1 2 3 31 31 H 1.08997 * 109.47130 * 209.97626 * 1 2 3 32 32 H 1.09004 * 109.46888 * 329.97764 * 1 2 3 33 33 H 1.08999 * 109.46712 * 204.99747 * 6 5 3 34 34 H 1.08999 * 109.46969 * 325.00048 * 6 5 3 35 35 H 1.00896 * 111.00599 * 303.94901 * 7 6 5 36 36 H 1.09001 * 109.46967 * 54.99691 * 10 8 7 37 37 H 1.08992 * 109.47211 * 174.99693 * 10 8 7 38 38 H 0.96998 * 119.99846 * 179.97438 * 14 13 11 39 39 H 1.07996 * 119.99939 * 0.02562 * 20 19 8 40 40 H 1.07996 * 119.99701 * 180.23588 * 21 20 19 41 41 H 1.07997 * 119.99934 * 179.83040 * 22 21 20 42 42 H 1.07995 * 120.00012 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.00257 * 180.02562 * 24 23 22 44 44 H 1.07998 * 126.80827 * 179.71273 * 25 5 3 45 45 H 0.96704 * 117.00007 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2964 1.0906 0.0000 4 1 1.9759 2.0061 0.0004 5 6 3.6110 0.7256 -0.0006 6 6 4.7817 1.6746 -0.0002 7 7 5.0864 2.0756 1.3797 8 6 6.2254 3.0025 1.4192 9 1 6.2010 3.6457 0.5396 10 6 6.1400 3.8621 2.6821 11 6 4.9156 4.7378 2.6118 12 1 4.2633 4.6861 1.7526 13 6 4.6275 5.6042 3.6450 14 7 3.5587 6.3681 3.5839 15 14 5.7545 5.6920 5.1321 16 1 6.8051 6.7150 4.8973 17 1 4.9625 6.0623 6.3323 18 1 6.3922 4.3685 5.3488 19 6 7.5117 2.2174 1.4319 20 6 7.6102 1.0644 2.1881 21 6 8.7889 0.3422 2.1966 22 6 9.8716 0.7773 1.4555 23 6 9.7748 1.9333 0.7036 24 6 8.5949 2.6534 0.6919 25 6 3.6946 -0.6162 -0.0069 26 6 2.3152 -1.1166 -0.0005 27 6 1.8831 -2.5228 -0.0006 28 8 0.6984 -2.7946 0.0002 29 8 2.8010 -3.5098 -0.0016 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 5.6503 1.1801 -0.4350 34 1 4.5337 2.5577 -0.5890 35 1 4.2764 2.4785 1.8265 36 1 6.0748 3.2160 3.5575 37 1 7.0299 4.4869 2.7571 38 1 3.3559 6.9774 4.3109 39 1 6.7653 0.7261 2.7694 40 1 8.8647 -0.5607 2.7844 41 1 10.7933 0.2145 1.4644 42 1 10.6208 2.2735 0.1249 43 1 8.5191 3.5563 0.1041 44 1 4.5979 -1.2081 -0.0132 45 1 2.4689 -4.4181 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599964536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:43 Heat of formation + Delta-G solvation = -54.041408 kcal Electronic energy + Delta-G solvation = -27169.229951 eV Core-core repulsion = 23343.626247 eV Total energy + Delta-G solvation = -3825.603704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35931 -40.55370 -40.23454 -37.61625 -36.88951 -34.93825 -33.60774 -32.19269 -31.81802 -31.55855 -30.93129 -28.41506 -26.45966 -25.23878 -23.86476 -23.36960 -23.13477 -21.49116 -20.99228 -20.59890 -19.06777 -18.88580 -17.77212 -17.41376 -16.75823 -16.68081 -16.43834 -16.39170 -16.17834 -15.69104 -15.39279 -14.88839 -14.87096 -14.61349 -14.36133 -14.11791 -14.04443 -13.94155 -13.67616 -13.54020 -13.52571 -13.22966 -13.10573 -12.82340 -12.55556 -12.43572 -12.36407 -12.23370 -11.83970 -11.70545 -11.52532 -11.47657 -11.26593 -10.78236 -9.92870 -9.65311 -9.43937 -9.37750 -9.05529 -8.31214 -6.33381 0.47630 0.61181 0.68560 1.30868 1.33686 1.37216 1.47423 1.99373 2.29712 2.34170 2.55436 3.02614 3.06360 3.46772 3.74028 3.89973 4.06427 4.11810 4.19701 4.32305 4.34711 4.44450 4.49611 4.53845 4.56375 4.65918 4.68987 4.73398 4.82106 4.87378 4.90394 5.05305 5.15424 5.27303 5.28869 5.33503 5.36464 5.59241 5.70153 5.73396 5.75053 5.78168 5.86198 5.96244 6.19779 6.27090 6.30831 6.45725 6.49883 6.71223 7.18567 7.31589 8.83865 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.003907 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.761218 B = 7165.217620 C = 9543.811298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.126 3.874 3 N -0.533 5.533 4 H 0.427 0.573 5 C 0.016 3.984 6 C 0.135 3.865 7 N -0.673 5.673 8 C 0.148 3.852 9 H 0.038 0.962 10 C -0.003 4.003 11 C -0.519 4.519 12 H 0.044 0.956 13 C 0.018 3.982 14 N -0.943 5.943 15 Si 0.935 3.065 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.254 1.254 19 C -0.080 4.080 20 C -0.102 4.102 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.126 4.126 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.264 4.264 27 C 0.563 3.437 28 O -0.558 6.558 29 O -0.510 6.510 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.035 0.965 35 H 0.346 0.654 36 H 0.021 0.979 37 H 0.016 0.984 38 H 0.265 0.735 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.120 0.880 44 H 0.154 0.846 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -15.115 -8.469 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.005 3.995 3 N -0.129 5.129 4 H 0.266 0.734 5 C -0.093 4.093 6 C 0.006 3.994 7 N -0.305 5.305 8 C 0.038 3.962 9 H 0.056 0.944 10 C -0.040 4.040 11 C -0.557 4.557 12 H 0.063 0.937 13 C -0.180 4.180 14 N -0.583 5.583 15 Si 0.760 3.240 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.177 1.177 19 C -0.080 4.080 20 C -0.120 4.120 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.273 4.273 27 C 0.411 3.589 28 O -0.452 6.452 29 O -0.323 6.323 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.054 0.946 35 H 0.166 0.834 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.138 0.862 44 H 0.172 0.828 45 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 4.720 -15.060 -8.248 17.808 hybrid contribution -0.752 1.223 0.498 1.520 sum 3.968 -13.837 -7.750 16.348 Atomic orbital electron populations 1.20659 0.85251 1.04769 1.04513 1.20906 0.94465 0.85123 0.99045 1.41647 1.05689 1.09120 1.56435 0.73422 1.20139 0.84054 0.94872 1.10240 1.20382 0.93683 0.95078 0.90300 1.60550 1.09549 1.44485 1.15964 1.20158 0.88284 0.90207 0.97556 0.94376 1.19615 0.95515 0.94314 0.94582 1.21250 1.08794 1.21016 1.04662 0.93735 1.25738 0.96258 0.94879 1.01092 1.70018 1.28078 1.25958 1.34255 0.85874 0.79268 0.79573 0.79247 1.19612 1.21272 1.17737 1.20018 0.94952 0.95876 0.97200 1.21063 0.97923 0.94664 0.98359 1.21416 0.93098 1.00413 0.99963 1.21412 0.99218 0.96971 0.97143 1.21333 0.97530 0.95611 0.99902 1.21218 0.93642 1.00377 1.00076 1.21881 0.95759 0.92404 1.05099 1.19469 0.94269 0.89190 1.24338 1.19784 0.82578 0.85723 0.70809 1.90819 1.19210 1.85063 1.50091 1.84568 1.41675 1.20424 1.85586 0.88804 0.89316 0.89525 0.88498 0.94644 0.83421 0.96065 0.96535 0.92609 0.86579 0.84619 0.83829 0.84085 0.86169 0.82791 0.71130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.92 9.90 71.24 0.71 -1.21 16 2 C 0.13 3.19 7.22 42.04 0.30 3.49 16 3 N -0.53 -13.25 5.89 -170.36 -1.00 -14.26 16 4 H 0.43 9.28 8.96 -92.71 -0.83 8.45 16 5 C 0.02 0.43 6.63 40.98 0.27 0.70 16 6 C 0.13 3.83 6.00 85.56 0.51 4.35 16 7 N -0.67 -22.95 5.55 -499.46 -2.77 -25.72 16 8 C 0.15 5.42 2.19 44.17 0.10 5.51 16 9 H 0.04 1.45 7.66 -2.39 -0.02 1.43 16 10 C 0.00 -0.12 3.62 29.85 0.11 -0.01 16 11 C -0.52 -27.33 8.67 25.60 0.22 -27.11 16 12 H 0.04 2.50 7.73 -2.91 -0.02 2.48 16 13 C 0.02 1.01 5.47 84.65 0.46 1.48 16 14 N -0.94 -55.88 13.96 21.45 0.30 -55.58 16 15 Si 0.94 43.31 27.47 68.60 1.88 45.19 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.25 -11.25 6.54 99.48 0.65 -10.59 16 19 C -0.08 -2.58 4.71 -19.86 -0.09 -2.68 16 20 C -0.10 -3.12 9.32 22.27 0.21 -2.92 16 21 C -0.13 -3.29 10.05 22.27 0.22 -3.06 16 22 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 23 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 24 C -0.13 -3.84 9.67 22.27 0.22 -3.63 16 25 C -0.13 -3.51 10.89 23.62 0.26 -3.26 16 26 C -0.26 -7.37 6.33 -18.82 -0.12 -7.49 16 27 C 0.56 15.04 8.32 70.15 0.58 15.63 16 28 O -0.56 -16.62 15.66 19.66 0.31 -16.31 16 29 O -0.51 -10.49 13.33 -56.95 -0.76 -11.25 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 2.03 6.51 -2.39 -0.02 2.02 16 32 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.10 2.62 8.00 -2.39 -0.02 2.60 16 34 H 0.04 1.01 8.06 -2.39 -0.02 0.99 16 35 H 0.35 13.41 7.20 -89.70 -0.65 12.76 16 36 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 37 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 38 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.12 3.80 7.73 -2.91 -0.02 3.78 16 40 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.12 3.24 8.04 -2.91 -0.02 3.21 16 44 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 45 H 0.43 4.42 9.11 -74.05 -0.67 3.74 16 Total: -1.00 -67.56 382.28 1.20 -66.36 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -1.17 Total: 37.16 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 4.41 Total: -25.59 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -3.48 Total: -95.56 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.45 Total: -27.57 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -67.56 1.20 -66.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599964536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.319 kcal (2) G-P(sol) polarization free energy of solvation -67.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds