Wall clock time and date at job start Tue Mar 31 2020 15:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34623 * 125.89427 * 2 1 4 4 H 0.97003 * 124.81748 * 359.97438 * 3 2 1 5 5 C 1.36437 * 110.37935 * 179.82650 * 3 2 1 6 6 C 1.50699 * 125.45653 * 180.20710 * 5 3 2 7 7 N 1.46908 * 109.46888 * 275.30018 * 6 5 3 8 8 C 1.46897 * 110.99976 * 176.23285 * 7 6 5 9 9 H 1.08997 * 109.47401 * 33.33047 * 8 7 6 10 10 C 1.53006 * 109.47162 * 273.33617 * 8 7 6 11 11 C 1.50702 * 109.47163 * 174.24943 * 10 8 7 12 12 H 1.07994 * 119.99732 * 357.34315 * 11 10 8 13 13 C 1.37878 * 119.99519 * 177.34099 * 11 10 8 14 14 N 1.31507 * 120.00241 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99481 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47201 * 59.99950 * 15 13 11 17 17 H 1.48498 * 109.46822 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47035 * 299.99752 * 15 13 11 19 19 C 1.50699 * 109.47360 * 153.33263 * 8 7 6 20 20 C 1.38241 * 119.99736 * 39.72496 * 19 8 7 21 21 C 1.38234 * 119.99880 * 179.79042 * 20 19 8 22 22 C 1.38232 * 119.99714 * 0.43971 * 21 20 19 23 23 C 1.38233 * 120.00396 * 359.81593 * 22 21 20 24 24 C 1.38224 * 120.00275 * 219.99995 * 19 8 7 25 25 C 1.34434 * 109.08438 * 0.44542 * 5 3 2 26 26 C 1.37843 * 125.89608 * 180.31367 * 2 1 3 27 27 C 1.47107 * 127.02712 * 0.02562 * 26 2 1 28 28 O 1.21555 * 119.99616 * 0.02562 * 27 26 2 29 29 O 1.34783 * 120.00206 * 180.02562 * 27 26 2 30 30 H 1.08996 * 109.47094 * 269.69320 * 1 2 3 31 31 H 1.09005 * 109.46811 * 149.68723 * 1 2 3 32 32 H 1.09003 * 109.47196 * 29.69041 * 1 2 3 33 33 H 1.08995 * 109.47426 * 35.29663 * 6 5 3 34 34 H 1.09003 * 109.47016 * 155.30729 * 6 5 3 35 35 H 1.00906 * 110.99590 * 52.27768 * 7 6 5 36 36 H 1.09006 * 109.46710 * 294.24580 * 10 8 7 37 37 H 1.08994 * 109.47246 * 54.24062 * 10 8 7 38 38 H 0.97011 * 119.99861 * 179.97438 * 14 13 11 39 39 H 1.07999 * 119.99988 * 0.02562 * 20 19 8 40 40 H 1.08000 * 119.99561 * 180.27664 * 21 20 19 41 41 H 1.08004 * 119.99725 * 179.83366 * 22 21 20 42 42 H 1.07997 * 119.99989 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.00432 * 359.97438 * 24 19 8 44 44 H 1.07997 * 126.81293 * 179.74161 * 25 5 3 45 45 H 0.96701 * 116.99602 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2963 1.0906 0.0000 4 1 1.9759 2.0062 -0.0004 5 6 3.6110 0.7256 0.0039 6 6 4.7816 1.6746 0.0095 7 7 5.0861 2.0847 -1.3679 8 6 6.1659 3.0802 -1.3943 9 1 6.8660 2.8786 -0.5835 10 6 5.5734 4.4801 -1.2199 11 6 6.6888 5.4870 -1.1053 12 1 7.7169 5.1566 -1.1090 13 6 6.3965 6.8300 -0.9957 14 7 5.1444 7.2322 -0.9917 15 14 7.7791 8.0782 -0.8544 16 1 8.6447 7.9965 -2.0582 17 1 7.2045 9.4435 -0.7490 18 1 8.5870 7.7869 0.3570 19 6 6.8895 3.0018 -2.7139 20 6 6.1773 2.8024 -3.8818 21 6 6.8406 2.7348 -5.0928 22 6 8.2168 2.8575 -5.1348 23 6 8.9294 3.0516 -3.9663 24 6 8.2657 3.1236 -2.7558 25 6 3.6947 -0.6161 -0.0034 26 6 2.3152 -1.1166 -0.0061 27 6 1.8832 -2.5228 -0.0143 28 8 0.6985 -2.7946 -0.0168 29 8 2.8011 -3.5098 -0.0191 30 1 -0.3633 -0.0055 1.0276 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3634 0.8928 -0.5090 33 1 4.5337 2.5539 0.6039 34 1 5.6504 1.1773 0.4409 35 1 4.2609 2.4338 -1.8320 36 1 4.9528 4.7220 -2.0827 37 1 4.9651 4.5071 -0.3159 38 1 4.9388 8.1771 -0.9142 39 1 5.1024 2.7032 -3.8486 40 1 6.2837 2.5834 -6.0057 41 1 8.7352 2.8020 -6.0806 42 1 10.0046 3.1479 -3.9992 43 1 8.8226 3.2754 -1.8430 44 1 4.5979 -1.2081 -0.0066 45 1 2.4690 -4.4180 -0.0249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599964537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:47 Heat of formation + Delta-G solvation = -36.129476 kcal Electronic energy + Delta-G solvation = -26928.799618 eV Core-core repulsion = 23103.972634 eV Total energy + Delta-G solvation = -3824.826985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40873 -39.59250 -38.88585 -36.30581 -35.95136 -33.25193 -32.15685 -31.23077 -30.70829 -30.26988 -28.59015 -27.28834 -25.08368 -23.82763 -22.86605 -22.28674 -21.72630 -20.54212 -19.68910 -19.66981 -17.94944 -17.02392 -16.52160 -16.13274 -15.70252 -15.66362 -14.99541 -14.84254 -14.76460 -14.38787 -14.17020 -13.85867 -13.49706 -13.30973 -13.16044 -12.89435 -12.77348 -12.59050 -12.56834 -12.30739 -12.04007 -11.88812 -11.57260 -11.50941 -11.47503 -11.06308 -10.86431 -10.76848 -10.50716 -10.37116 -10.09315 -9.93965 -9.32006 -8.95286 -8.48299 -8.30161 -8.26927 -8.02351 -7.74755 -6.11767 -4.13681 1.42413 2.02786 2.03725 2.32602 2.86787 3.26727 3.27818 3.31416 3.34262 3.41607 4.35817 4.41329 4.62994 4.71387 4.93266 4.98678 5.25360 5.32001 5.38372 5.41785 5.45677 5.45952 5.52077 5.60868 5.73336 5.79046 5.81128 5.88207 6.02279 6.13845 6.20596 6.20965 6.43793 6.52493 6.62984 6.66423 6.71567 6.92738 6.99695 7.06072 7.16511 7.29154 7.34493 7.39883 7.60119 7.64743 7.75343 7.86412 8.02300 8.26478 8.90483 9.51036 10.99331 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.003022 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.402733 B = 9261.636653 C =10770.827460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.122 3.878 3 N -0.538 5.538 4 H 0.420 0.580 5 C 0.022 3.978 6 C 0.126 3.874 7 N -0.681 5.681 8 C 0.119 3.881 9 H 0.077 0.923 10 C 0.007 3.993 11 C -0.513 4.513 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.896 5.896 15 Si 0.889 3.111 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.021 4.021 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.107 4.107 25 C -0.123 4.123 26 C -0.238 4.238 27 C 0.561 3.439 28 O -0.537 6.537 29 O -0.513 6.513 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.336 0.664 36 H 0.022 0.978 37 H 0.014 0.986 38 H 0.261 0.739 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.151 0.849 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 -14.768 0.073 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.001 3.999 3 N -0.134 5.134 4 H 0.257 0.743 5 C -0.086 4.086 6 C -0.004 4.004 7 N -0.311 5.311 8 C 0.011 3.989 9 H 0.095 0.905 10 C -0.031 4.031 11 C -0.552 4.552 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.536 5.536 15 Si 0.717 3.283 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.022 4.022 20 C -0.120 4.120 21 C -0.145 4.145 22 C -0.158 4.158 23 C -0.144 4.144 24 C -0.126 4.126 25 C -0.147 4.147 26 C -0.246 4.246 27 C 0.408 3.592 28 O -0.429 6.429 29 O -0.323 6.323 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.168 0.832 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.804 -14.666 -0.020 15.152 hybrid contribution -0.073 1.591 0.322 1.625 sum -3.877 -13.075 0.302 13.641 Atomic orbital electron populations 1.20617 0.86843 1.04410 1.03639 1.20506 0.93412 0.85394 1.00561 1.41633 1.06047 1.08641 1.57058 0.74276 1.20292 0.83768 0.95035 1.09540 1.20461 0.93241 0.95241 0.91447 1.60817 1.11826 1.43828 1.14591 1.20781 0.92087 0.92142 0.93897 0.90508 1.19685 0.96685 0.89681 0.97058 1.21050 0.92851 0.91170 1.50140 0.92275 1.24967 0.95374 0.98612 0.95177 1.69930 1.17395 1.15708 1.50518 0.86687 0.82390 0.80431 0.78768 1.20086 1.21343 1.20193 1.19638 0.93031 0.94755 0.94763 1.20790 0.99443 0.99828 0.91966 1.20981 0.94478 1.01597 0.97445 1.20909 0.94367 1.02892 0.97618 1.20967 0.99162 1.01347 0.92879 1.20930 0.94123 0.99920 0.97623 1.21797 0.95502 0.92315 1.05103 1.19222 0.93977 0.88415 1.23026 1.19833 0.82692 0.85419 0.71220 1.90834 1.18466 1.84706 1.48918 1.84618 1.42238 1.19299 1.86160 0.90181 0.88274 0.91239 0.93663 0.88752 0.84675 0.95966 0.96748 0.92939 0.86922 0.87137 0.87247 0.87036 0.86605 0.83173 0.73520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.90 36.01 0.36 -0.56 16 2 C 0.12 1.43 7.22 -81.51 -0.59 0.84 16 3 N -0.54 -6.07 5.89 -5.20 -0.03 -6.10 16 4 H 0.42 3.94 8.96 -40.82 -0.37 3.58 16 5 C 0.02 0.28 6.59 -81.89 -0.54 -0.26 16 6 C 0.13 1.72 6.00 -4.97 -0.03 1.69 16 7 N -0.68 -10.63 5.69 -109.22 -0.62 -11.25 16 8 C 0.12 2.22 2.21 -68.86 -0.15 2.07 16 9 H 0.08 1.44 7.68 -51.93 -0.40 1.04 16 10 C 0.01 0.16 4.41 -27.88 -0.12 0.04 16 11 C -0.51 -13.38 8.56 -34.44 -0.29 -13.68 16 12 H 0.06 1.50 6.68 -52.49 -0.35 1.15 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16 15 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.02 -0.40 4.50 -104.63 -0.47 -0.87 16 20 C -0.10 -1.81 9.33 -39.58 -0.37 -2.18 16 21 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16 22 C -0.14 -2.18 10.05 -39.59 -0.40 -2.57 16 23 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 24 C -0.11 -1.94 8.78 -39.59 -0.35 -2.29 16 25 C -0.12 -1.62 10.89 -37.49 -0.41 -2.03 16 26 C -0.24 -3.14 6.33 -103.01 -0.65 -3.80 16 27 C 0.56 7.24 8.32 34.33 0.29 7.52 16 28 O -0.54 -7.71 15.66 -19.31 -0.30 -8.02 16 29 O -0.51 -5.26 13.33 -40.72 -0.54 -5.81 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.05 6.51 -51.93 -0.34 0.71 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.66 7.41 -51.93 -0.38 0.27 16 34 H 0.09 1.23 8.12 -51.93 -0.42 0.81 16 35 H 0.34 5.26 7.83 -39.29 -0.31 4.95 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.01 0.35 7.42 -51.93 -0.39 -0.04 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.11 1.90 7.29 -52.49 -0.38 1.51 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.12 2.00 7.83 -52.48 -0.41 1.59 16 44 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 45 H 0.41 2.18 9.11 45.56 0.42 2.59 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -31.99 383.16 -10.06 -42.05 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.43 Total: 11.60 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -4.62 Total: -19.41 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.08 Total: -42.18 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.85 Total: -13.82 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.99 -10.06 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599964537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.921 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds