Wall clock time and date at job start Tue Mar 31 2020 15:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34623 * 125.89427 * 2 1 4 4 H 0.97003 * 124.81748 * 359.97438 * 3 2 1 5 5 C 1.36437 * 110.37935 * 179.82650 * 3 2 1 6 6 C 1.50699 * 125.45653 * 180.20710 * 5 3 2 7 7 N 1.46908 * 109.46888 * 275.30018 * 6 5 3 8 8 C 1.46897 * 110.99976 * 176.23285 * 7 6 5 9 9 H 1.08997 * 109.47401 * 33.33047 * 8 7 6 10 10 C 1.53006 * 109.47162 * 273.33617 * 8 7 6 11 11 C 1.50702 * 109.47163 * 174.24943 * 10 8 7 12 12 H 1.07994 * 119.99732 * 357.34315 * 11 10 8 13 13 C 1.37878 * 119.99519 * 177.34099 * 11 10 8 14 14 N 1.31507 * 120.00241 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99481 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47201 * 59.99950 * 15 13 11 17 17 H 1.48498 * 109.46822 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47035 * 299.99752 * 15 13 11 19 19 C 1.50699 * 109.47360 * 153.33263 * 8 7 6 20 20 C 1.38241 * 119.99736 * 39.72496 * 19 8 7 21 21 C 1.38234 * 119.99880 * 179.79042 * 20 19 8 22 22 C 1.38232 * 119.99714 * 0.43971 * 21 20 19 23 23 C 1.38233 * 120.00396 * 359.81593 * 22 21 20 24 24 C 1.38224 * 120.00275 * 219.99995 * 19 8 7 25 25 C 1.34434 * 109.08438 * 0.44542 * 5 3 2 26 26 C 1.37843 * 125.89608 * 180.31367 * 2 1 3 27 27 C 1.47107 * 127.02712 * 0.02562 * 26 2 1 28 28 O 1.21555 * 119.99616 * 0.02562 * 27 26 2 29 29 O 1.34783 * 120.00206 * 180.02562 * 27 26 2 30 30 H 1.08996 * 109.47094 * 269.69320 * 1 2 3 31 31 H 1.09005 * 109.46811 * 149.68723 * 1 2 3 32 32 H 1.09003 * 109.47196 * 29.69041 * 1 2 3 33 33 H 1.08995 * 109.47426 * 35.29663 * 6 5 3 34 34 H 1.09003 * 109.47016 * 155.30729 * 6 5 3 35 35 H 1.00906 * 110.99590 * 52.27768 * 7 6 5 36 36 H 1.09006 * 109.46710 * 294.24580 * 10 8 7 37 37 H 1.08994 * 109.47246 * 54.24062 * 10 8 7 38 38 H 0.97011 * 119.99861 * 179.97438 * 14 13 11 39 39 H 1.07999 * 119.99988 * 0.02562 * 20 19 8 40 40 H 1.08000 * 119.99561 * 180.27664 * 21 20 19 41 41 H 1.08004 * 119.99725 * 179.83366 * 22 21 20 42 42 H 1.07997 * 119.99989 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.00432 * 359.97438 * 24 19 8 44 44 H 1.07997 * 126.81293 * 179.74161 * 25 5 3 45 45 H 0.96701 * 116.99602 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2963 1.0906 0.0000 4 1 1.9759 2.0062 -0.0004 5 6 3.6110 0.7256 0.0039 6 6 4.7816 1.6746 0.0095 7 7 5.0861 2.0847 -1.3679 8 6 6.1659 3.0802 -1.3943 9 1 6.8660 2.8786 -0.5835 10 6 5.5734 4.4801 -1.2199 11 6 6.6888 5.4870 -1.1053 12 1 7.7169 5.1566 -1.1090 13 6 6.3965 6.8300 -0.9957 14 7 5.1444 7.2322 -0.9917 15 14 7.7791 8.0782 -0.8544 16 1 8.6447 7.9965 -2.0582 17 1 7.2045 9.4435 -0.7490 18 1 8.5870 7.7869 0.3570 19 6 6.8895 3.0018 -2.7139 20 6 6.1773 2.8024 -3.8818 21 6 6.8406 2.7348 -5.0928 22 6 8.2168 2.8575 -5.1348 23 6 8.9294 3.0516 -3.9663 24 6 8.2657 3.1236 -2.7558 25 6 3.6947 -0.6161 -0.0034 26 6 2.3152 -1.1166 -0.0061 27 6 1.8832 -2.5228 -0.0143 28 8 0.6985 -2.7946 -0.0168 29 8 2.8011 -3.5098 -0.0191 30 1 -0.3633 -0.0055 1.0276 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3634 0.8928 -0.5090 33 1 4.5337 2.5539 0.6039 34 1 5.6504 1.1773 0.4409 35 1 4.2609 2.4338 -1.8320 36 1 4.9528 4.7220 -2.0827 37 1 4.9651 4.5071 -0.3159 38 1 4.9388 8.1771 -0.9142 39 1 5.1024 2.7032 -3.8486 40 1 6.2837 2.5834 -6.0057 41 1 8.7352 2.8020 -6.0806 42 1 10.0046 3.1479 -3.9992 43 1 8.8226 3.2754 -1.8430 44 1 4.5979 -1.2081 -0.0066 45 1 2.4690 -4.4180 -0.0249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599964537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:46 Heat of formation + Delta-G solvation = -55.730126 kcal Electronic energy + Delta-G solvation = -26929.649566 eV Core-core repulsion = 23103.972634 eV Total energy + Delta-G solvation = -3825.676933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.37341 -40.55156 -40.21297 -37.63985 -36.88792 -35.02156 -33.51178 -32.20195 -31.85138 -31.52884 -30.21056 -28.49568 -26.38994 -25.21055 -23.94959 -23.84279 -23.02500 -21.55947 -21.09264 -20.60485 -18.90459 -18.51585 -18.11406 -17.29008 -16.76592 -16.64267 -16.57467 -16.20799 -16.03683 -15.68879 -15.36016 -14.94281 -14.74138 -14.41600 -14.35035 -14.22997 -14.03628 -13.87328 -13.79955 -13.38346 -13.25366 -13.16982 -13.05582 -12.79246 -12.62467 -12.52944 -12.43484 -12.40199 -11.82509 -11.71027 -11.55710 -11.47791 -11.23947 -10.55240 -9.93669 -9.60121 -9.52345 -9.19344 -9.05767 -8.18579 -6.26234 0.47377 0.71854 0.73074 1.29852 1.39267 1.40678 1.47484 1.98398 2.29397 2.40518 2.54791 3.09050 3.16750 3.42752 3.73708 3.90501 4.07110 4.14521 4.18528 4.33272 4.38599 4.44351 4.49893 4.51438 4.58768 4.69574 4.70035 4.82705 4.85640 4.88147 4.92630 5.06121 5.23246 5.28827 5.34068 5.44031 5.52733 5.67443 5.70002 5.74748 5.78508 5.81081 5.88714 5.95005 6.08813 6.31532 6.35360 6.41801 6.45139 6.87281 7.18619 7.41692 8.91856 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.003022 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.402733 B = 9261.636653 C =10770.827460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.129 3.871 3 N -0.533 5.533 4 H 0.428 0.572 5 C 0.015 3.985 6 C 0.131 3.869 7 N -0.672 5.672 8 C 0.136 3.864 9 H 0.074 0.926 10 C 0.019 3.981 11 C -0.520 4.520 12 H 0.063 0.937 13 C 0.006 3.994 14 N -0.932 5.932 15 Si 0.949 3.051 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.046 4.046 20 C -0.119 4.119 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.265 4.265 27 C 0.562 3.438 28 O -0.558 6.558 29 O -0.510 6.510 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.035 0.965 34 H 0.102 0.898 35 H 0.335 0.665 36 H -0.006 1.006 37 H -0.004 1.004 38 H 0.260 0.740 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.116 0.884 44 H 0.155 0.845 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -15.316 -0.739 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.007 3.993 3 N -0.129 5.129 4 H 0.267 0.733 5 C -0.094 4.094 6 C 0.001 3.999 7 N -0.301 5.301 8 C 0.027 3.973 9 H 0.092 0.908 10 C -0.019 4.019 11 C -0.559 4.559 12 H 0.081 0.919 13 C -0.192 4.192 14 N -0.572 5.572 15 Si 0.774 3.226 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.046 4.046 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.273 4.273 27 C 0.411 3.589 28 O -0.452 6.452 29 O -0.323 6.323 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.120 0.880 35 H 0.152 0.848 36 H 0.013 0.987 37 H 0.014 0.986 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.134 0.866 44 H 0.173 0.827 45 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -2.791 -15.244 -0.826 15.519 hybrid contribution -0.381 1.683 0.539 1.808 sum -3.172 -13.560 -0.287 13.929 Atomic orbital electron populations 1.20669 0.85110 1.04916 1.04503 1.20904 0.94467 0.85035 0.98865 1.41630 1.05561 1.09141 1.56568 0.73302 1.20074 0.84022 0.94719 1.10564 1.20424 0.94160 0.95102 0.90182 1.60841 1.11239 1.42259 1.15759 1.20439 0.92515 0.90015 0.94340 0.90804 1.19510 0.95470 0.92157 0.94754 1.21474 0.93784 0.91869 1.48784 0.91871 1.25769 0.97441 1.00698 0.95268 1.70052 1.19230 1.15900 1.52053 0.85737 0.79740 0.78009 0.79065 1.19677 1.21354 1.19121 1.19728 0.93671 0.96404 0.94844 1.20952 0.99684 1.00529 0.92574 1.21340 0.95219 1.00670 0.97723 1.21332 0.94261 1.01283 0.98789 1.21324 1.00638 1.00375 0.92400 1.21115 0.94059 1.00845 0.98673 1.21929 0.95892 0.92461 1.04825 1.19476 0.94258 0.89214 1.24362 1.19802 0.82577 0.85754 0.70814 1.90821 1.19191 1.85070 1.50085 1.84571 1.41730 1.20465 1.85570 0.89024 0.89291 0.89145 0.94636 0.87960 0.84768 0.98746 0.98599 0.93108 0.86955 0.84626 0.83998 0.84455 0.86638 0.82720 0.71119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.90 71.24 0.71 -0.96 16 2 C 0.13 2.92 7.22 42.04 0.30 3.22 16 3 N -0.53 -11.75 5.89 -170.37 -1.00 -12.75 16 4 H 0.43 7.86 8.96 -92.71 -0.83 7.03 16 5 C 0.01 0.37 6.59 40.97 0.27 0.64 16 6 C 0.13 3.61 6.00 85.56 0.51 4.12 16 7 N -0.67 -21.26 5.69 -499.45 -2.84 -24.10 16 8 C 0.14 5.16 2.21 44.17 0.10 5.25 16 9 H 0.07 2.80 7.68 -2.39 -0.02 2.79 16 10 C 0.02 0.92 4.41 29.85 0.13 1.05 16 11 C -0.52 -27.47 8.56 25.60 0.22 -27.25 16 12 H 0.06 3.22 6.68 -2.91 -0.02 3.20 16 13 C 0.01 0.33 5.46 84.66 0.46 0.79 16 14 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 15 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 19 C -0.05 -1.72 4.50 -19.87 -0.09 -1.81 16 20 C -0.12 -4.17 9.33 22.27 0.21 -3.96 16 21 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 22 C -0.14 -3.93 10.05 22.27 0.22 -3.71 16 23 C -0.13 -3.93 10.05 22.27 0.22 -3.71 16 24 C -0.13 -4.54 8.78 22.27 0.20 -4.35 16 25 C -0.13 -3.28 10.89 23.63 0.26 -3.02 16 26 C -0.26 -6.85 6.33 -18.82 -0.12 -6.97 16 27 C 0.56 14.14 8.32 70.15 0.58 14.73 16 28 O -0.56 -15.71 15.66 19.66 0.31 -15.41 16 29 O -0.51 -9.92 13.33 -56.95 -0.76 -10.68 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.80 6.51 -2.38 -0.02 1.79 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.06 7.41 -2.39 -0.02 1.04 16 34 H 0.10 2.65 8.12 -2.39 -0.02 2.63 16 35 H 0.33 10.73 7.83 -89.69 -0.70 10.03 16 36 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 37 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 38 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 39 H 0.11 3.81 7.29 -2.91 -0.02 3.79 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 41 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 43 H 0.12 3.95 7.83 -2.91 -0.02 3.93 16 44 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 45 H 0.43 3.98 9.11 -74.06 -0.67 3.31 16 Total: -1.00 -68.51 383.16 1.26 -67.25 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -1.16 Total: 34.14 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 4.41 Total: -29.68 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -3.56 Total: -90.72 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.45 Total: -26.09 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -68.51 1.26 -67.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599964537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.520 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds