Wall clock time and date at job start Tue Mar 31 2020 15:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39796 * 126.51512 * 2 1 4 4 C 1.35488 * 107.83912 * 179.86661 * 3 2 1 5 5 C 1.50706 * 125.50540 * 180.14948 * 4 3 2 6 6 N 1.46904 * 109.47236 * 265.31886 * 5 4 3 7 7 C 1.46900 * 110.99963 * 176.23683 * 6 5 4 8 8 H 1.09005 * 109.47066 * 33.32758 * 7 6 5 9 9 C 1.52998 * 109.46865 * 273.33027 * 7 6 5 10 10 C 1.50704 * 109.46922 * 174.25030 * 9 7 6 11 11 H 1.08003 * 120.00084 * 357.34018 * 10 9 7 12 12 C 1.37875 * 120.00092 * 177.34542 * 10 9 7 13 13 N 1.31514 * 119.99958 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00183 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46918 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46794 * 119.99686 * 14 12 10 17 17 H 1.48499 * 109.47063 * 239.99797 * 14 12 10 18 18 C 1.50699 * 109.47008 * 153.32992 * 7 6 5 19 19 C 1.38240 * 119.99953 * 39.72437 * 18 7 6 20 20 C 1.38231 * 119.99723 * 179.78764 * 19 18 7 21 21 C 1.38239 * 120.00067 * 0.44117 * 20 19 18 22 22 C 1.38236 * 120.00135 * 359.81600 * 21 20 19 23 23 C 1.38234 * 119.99844 * 359.97438 * 22 21 20 24 24 N 1.34957 * 108.98733 * 0.40135 * 4 3 2 25 25 H 0.96998 * 125.63520 * 179.74321 * 24 4 3 26 26 C 1.37696 * 108.72633 * 359.74949 * 24 4 3 27 27 C 1.46502 * 126.25929 * 179.97438 * 26 24 4 28 28 O 1.21615 * 119.99684 * 180.02562 * 27 26 24 29 29 O 1.34894 * 119.99908 * 0.03740 * 27 26 24 30 30 H 1.09000 * 109.47011 * 269.68848 * 1 2 3 31 31 H 1.08999 * 109.47025 * 149.68754 * 1 2 3 32 32 H 1.08997 * 109.47015 * 29.68742 * 1 2 3 33 33 H 1.08002 * 126.08031 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.46855 * 25.31782 * 5 4 3 35 35 H 1.09001 * 109.47087 * 145.31922 * 5 4 3 36 36 H 1.00900 * 110.99572 * 52.27995 * 6 5 4 37 37 H 1.08998 * 109.47206 * 294.24647 * 9 7 6 38 38 H 1.08996 * 109.47395 * 54.24759 * 9 7 6 39 39 H 0.96999 * 120.00654 * 180.02562 * 13 12 10 40 40 H 1.07993 * 119.99854 * 359.97438 * 19 18 7 41 41 H 1.08003 * 120.00193 * 180.27989 * 20 19 18 42 42 H 1.08002 * 120.00257 * 179.83360 * 21 20 19 43 43 H 1.07994 * 120.00345 * 179.97438 * 22 21 20 44 44 H 1.07997 * 120.00359 * 180.02562 * 23 22 21 45 45 H 0.96702 * 116.99288 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3389 1.1235 0.0000 4 6 3.6224 0.6897 0.0030 5 6 4.8445 1.5716 0.0073 6 7 5.3114 1.7681 -1.3717 7 6 6.4494 2.6960 -1.4149 8 1 7.0501 2.5765 -0.5132 9 6 5.9324 4.1336 -1.4966 10 6 7.0922 5.0909 -1.3987 11 1 8.0926 4.7134 -1.2462 12 6 6.8763 6.4486 -1.5039 13 7 5.6583 6.9082 -1.6900 14 14 8.3139 7.6352 -1.3819 15 1 9.5702 6.8710 -1.1741 16 1 8.4150 8.4209 -2.6379 17 1 8.0993 8.5567 -0.2373 18 6 7.2956 2.3969 -2.6255 19 6 6.6934 2.0699 -3.8261 20 6 7.4696 1.7999 -4.9376 21 6 8.8481 1.8479 -4.8463 22 6 9.4504 2.1698 -3.6444 23 6 8.6742 2.4440 -2.5340 24 7 3.6298 -0.6598 -0.0041 25 1 4.4212 -1.2207 -0.0073 26 6 2.3281 -1.1090 -0.0061 27 6 1.8944 -2.5083 -0.0138 28 8 0.7084 -2.7773 -0.0153 29 8 2.8106 -3.4984 -0.0190 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3633 0.8927 -0.5090 33 1 2.0158 2.1541 0.0004 34 1 4.5942 2.5371 0.4471 35 1 5.6320 1.0984 0.5936 36 1 4.5610 2.0882 -1.9653 37 1 5.4184 4.2815 -2.4463 38 1 5.2392 4.3176 -0.6758 39 1 5.5063 7.8633 -1.7644 40 1 5.6166 2.0283 -3.8963 41 1 6.9990 1.5488 -5.8768 42 1 9.4546 1.6344 -5.7141 43 1 10.5273 2.2070 -3.5730 44 1 9.1446 2.6959 -1.5950 45 1 2.4763 -4.4058 -0.0244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600203052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:02 Heat of formation + Delta-G solvation = -35.628000 kcal Electronic energy + Delta-G solvation = -26978.610497 eV Core-core repulsion = 23153.805258 eV Total energy + Delta-G solvation = -3824.805239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59023 -39.74996 -38.90263 -36.36282 -36.20285 -33.21192 -32.60270 -31.66708 -30.34228 -29.68135 -28.40533 -27.21782 -25.94191 -23.84630 -22.54769 -22.26711 -21.75896 -20.42435 -19.75003 -19.29962 -18.65792 -17.56485 -16.61461 -16.38032 -15.95967 -15.48493 -14.88299 -14.78532 -14.59889 -14.21891 -13.96214 -13.92605 -13.45343 -13.28483 -13.04172 -12.94870 -12.80157 -12.64693 -12.48033 -12.40613 -12.07107 -12.03662 -11.77380 -11.47887 -11.42217 -11.05928 -10.83736 -10.76160 -10.66368 -10.39892 -10.09227 -9.91607 -9.25783 -8.81565 -8.45638 -8.34752 -8.30162 -8.09485 -7.78088 -6.07893 -4.10028 1.10190 2.00688 2.01474 2.55601 2.75314 3.01798 3.16987 3.26459 3.34883 3.37841 4.35634 4.40900 4.61988 4.89683 4.96269 5.13571 5.22983 5.29018 5.40710 5.43494 5.48109 5.59405 5.66918 5.73442 5.75949 5.81175 5.87482 5.99270 6.05585 6.12140 6.18615 6.20464 6.38628 6.44014 6.61505 6.65462 6.71542 6.89789 6.97537 7.03931 7.14121 7.30532 7.34601 7.44239 7.61853 7.63031 7.71953 7.75981 7.89964 8.29546 8.94597 9.54564 11.03144 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.003070 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.265638 B = 9118.800904 C =10721.775757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.055 4.055 3 C -0.209 4.209 4 C 0.092 3.908 5 C 0.116 3.884 6 N -0.685 5.685 7 C 0.120 3.880 8 H 0.075 0.925 9 C 0.006 3.994 10 C -0.513 4.513 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.888 3.112 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.022 4.022 19 C -0.102 4.102 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.126 4.126 23 C -0.108 4.108 24 N -0.513 5.513 25 H 0.423 0.577 26 C -0.064 4.064 27 C 0.555 3.445 28 O -0.511 6.511 29 O -0.523 6.523 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.149 0.851 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.344 0.656 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.260 0.740 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -16.341 1.750 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.064 4.064 3 C -0.233 4.233 4 C -0.029 4.029 5 C -0.014 4.014 6 N -0.316 5.316 7 C 0.012 3.988 8 H 0.094 0.906 9 C -0.032 4.032 10 C -0.552 4.552 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.022 4.022 19 C -0.121 4.121 20 C -0.145 4.145 21 C -0.158 4.158 22 C -0.144 4.144 23 C -0.126 4.126 24 N -0.108 5.108 25 H 0.261 0.739 26 C -0.174 4.174 27 C 0.402 3.598 28 O -0.401 6.401 29 O -0.335 6.335 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.162 0.838 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.818 -16.578 1.745 16.906 hybrid contribution 0.566 0.905 0.100 1.072 sum -2.252 -15.673 1.845 15.941 Atomic orbital electron populations 1.20391 0.89187 1.03086 1.02327 1.19952 0.95742 0.90387 1.00319 1.20709 0.90830 0.99101 1.12650 1.20565 0.96844 0.82639 1.02830 1.20565 0.91612 0.96822 0.92398 1.60832 1.11328 1.51889 1.07522 1.20777 0.90212 0.92754 0.95061 0.90637 1.19699 0.96947 0.88890 0.97699 1.21114 0.93693 0.90927 1.49464 0.92277 1.24969 0.95479 0.98509 0.95196 1.69952 1.19882 1.13657 1.49774 0.86588 0.82933 0.81221 0.77634 1.19668 1.21042 1.21072 1.19655 0.93224 0.94528 0.94828 1.20816 0.99455 0.99431 0.92385 1.20991 0.93933 1.01484 0.98098 1.20914 0.94808 1.02729 0.97355 1.20968 0.99090 1.00970 0.93360 1.20934 0.93472 0.99656 0.98564 1.41696 1.07163 1.06708 1.55222 0.73855 1.18907 0.84546 0.89745 1.24184 1.19517 0.83402 0.84451 0.72476 1.90912 1.17684 1.83758 1.47706 1.84601 1.42575 1.19896 1.86454 0.91324 0.90458 0.91391 0.83363 0.91341 0.90242 0.83783 0.95790 0.96372 0.93027 0.86769 0.87117 0.87252 0.87056 0.86628 0.72722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.83 36.01 0.35 -0.69 16 2 C -0.06 -0.72 6.22 -104.13 -0.65 -1.36 16 3 C -0.21 -2.71 10.66 -39.98 -0.43 -3.13 16 4 C 0.09 1.16 6.58 -82.20 -0.54 0.62 16 5 C 0.12 1.54 6.00 -4.97 -0.03 1.51 16 6 N -0.68 -10.45 5.68 -109.21 -0.62 -11.07 16 7 C 0.12 2.21 2.21 -68.87 -0.15 2.06 16 8 H 0.08 1.38 7.68 -51.93 -0.40 0.98 16 9 C 0.01 0.13 4.41 -27.88 -0.12 0.01 16 10 C -0.51 -13.38 8.56 -34.44 -0.29 -13.67 16 11 H 0.06 1.51 6.68 -52.48 -0.35 1.16 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 14 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.02 -0.40 4.50 -104.62 -0.47 -0.87 16 19 C -0.10 -1.79 9.33 -39.58 -0.37 -2.16 16 20 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 21 C -0.14 -2.15 10.05 -39.58 -0.40 -2.54 16 22 C -0.13 -2.02 10.05 -39.58 -0.40 -2.41 16 23 C -0.11 -1.92 8.78 -39.58 -0.35 -2.26 16 24 N -0.51 -5.95 6.07 -5.82 -0.04 -5.98 16 25 H 0.42 4.16 8.96 -40.82 -0.37 3.79 16 26 C -0.06 -0.81 7.10 -81.99 -0.58 -1.39 16 27 C 0.56 6.60 8.30 34.06 0.28 6.88 16 28 O -0.51 -7.07 15.60 -19.35 -0.30 -7.37 16 29 O -0.52 -4.52 13.44 -41.02 -0.55 -5.07 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.93 6.50 -51.93 -0.34 0.59 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.07 0.99 7.41 -51.93 -0.38 0.60 16 35 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 36 H 0.34 5.43 7.83 -39.29 -0.31 5.12 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.02 0.44 7.42 -51.93 -0.39 0.06 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.11 1.90 7.29 -52.49 -0.38 1.52 16 41 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.12 1.98 7.83 -52.49 -0.41 1.57 16 45 H 0.41 1.65 9.11 45.56 0.42 2.07 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -31.36 382.83 -10.09 -41.45 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.43 Total: 11.45 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -4.64 Total: -20.29 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.08 Total: -41.97 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.85 Total: -12.44 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.36 -10.09 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600203052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.821 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds