Wall clock time and date at job start Tue Mar 31 2020 15:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30836 * 125.89822 * 2 1 4 4 N 1.40085 * 108.20674 * 180.14854 * 3 2 1 5 5 C 1.46498 * 126.03862 * 179.85335 * 4 3 2 6 6 C 1.50702 * 109.47206 * 269.69244 * 5 4 3 7 7 C 1.38634 * 119.75068 * 90.00006 * 6 5 4 8 8 C 1.37617 * 120.24624 * 179.97438 * 7 6 5 9 9 C 1.40710 * 119.74835 * 0.27471 * 8 7 6 10 10 C 1.41398 * 120.24546 * 179.70126 * 9 8 7 11 11 H 1.07995 * 119.99746 * 29.11227 * 10 9 8 12 12 C 1.39949 * 119.99976 * 209.11874 * 10 9 8 13 13 N 1.30827 * 119.99922 * 10.97861 * 12 10 9 14 14 Si 1.86802 * 119.99884 * 190.98644 * 12 10 9 15 15 H 1.48498 * 109.46971 * 59.99605 * 14 12 10 16 16 H 1.48498 * 109.46915 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46745 * 299.99152 * 14 12 10 18 18 C 1.40713 * 119.51131 * 359.47228 * 9 8 7 19 19 C 1.37619 * 119.74356 * 0.50585 * 18 9 8 20 20 C 1.34941 * 107.92416 * 359.59163 * 4 3 2 21 21 C 1.50699 * 126.12945 * 180.21608 * 20 4 3 22 22 C 1.35321 * 107.74763 * 0.24201 * 20 4 3 23 23 C 1.50705 * 126.04037 * 179.97438 * 22 20 4 24 24 H 1.08993 * 109.46694 * 175.07406 * 23 22 20 25 25 C 1.53001 * 109.46873 * 55.07676 * 23 22 20 26 26 C 1.50696 * 109.47316 * 295.07771 * 23 22 20 27 27 O 1.20827 * 120.00103 * 359.97438 * 26 23 22 28 28 O 1.34222 * 120.00034 * 180.02562 * 26 23 22 29 29 H 1.08999 * 109.46690 * 265.07968 * 1 2 3 30 30 H 1.09003 * 109.47333 * 25.07983 * 1 2 3 31 31 H 1.09002 * 109.47170 * 145.07781 * 1 2 3 32 32 H 1.09001 * 109.47346 * 149.69236 * 5 4 3 33 33 H 1.09004 * 109.47049 * 29.69271 * 5 4 3 34 34 H 1.07995 * 119.87490 * 359.95956 * 7 6 5 35 35 H 1.08000 * 120.12236 * 180.02562 * 8 7 6 36 36 H 0.97000 * 119.99884 * 180.02562 * 13 12 10 37 37 H 1.07994 * 120.13305 * 180.24703 * 18 9 8 38 38 H 1.08006 * 119.88104 * 179.74023 * 19 18 9 39 39 H 1.09005 * 109.47003 * 90.02841 * 21 20 4 40 40 H 1.08995 * 109.47573 * 210.02387 * 21 20 4 41 41 H 1.08999 * 109.47387 * 330.03125 * 21 20 4 42 42 H 1.09000 * 109.46986 * 303.98814 * 25 23 22 43 43 H 1.09006 * 109.47081 * 63.98657 * 25 23 22 44 44 H 1.08998 * 109.46857 * 183.98128 * 25 23 22 45 45 H 0.96702 * 117.00138 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0034 5 6 4.7899 1.5008 -0.0076 6 6 5.1953 1.7906 -1.4299 7 6 4.6683 2.8932 -2.0844 8 6 5.0319 3.1677 -3.3830 9 6 5.9377 2.3209 -4.0483 10 6 6.3136 2.5895 -5.3847 11 1 6.3219 3.6059 -5.7494 12 6 6.6749 1.5380 -6.2347 13 7 6.4624 0.2997 -5.8702 14 14 7.4608 1.9029 -7.8896 15 1 8.7282 2.6483 -7.6822 16 1 7.7469 0.6271 -8.5937 17 1 6.5322 2.7231 -8.7083 18 6 6.4703 1.2077 -3.3723 19 6 6.0929 0.9527 -2.0736 20 6 3.6143 -0.7152 0.0036 21 6 4.8350 -1.5988 0.0077 22 6 2.3271 -1.1330 0.0059 23 6 1.8600 -2.5658 0.0129 24 1 0.7740 -2.5933 0.1015 25 6 2.4872 -3.3009 1.1991 26 6 2.2765 -3.2363 -1.2708 27 8 2.8894 -2.6144 -2.1060 28 8 1.9658 -4.5240 -1.4869 29 1 -0.3633 -0.0881 1.0239 30 1 -0.3634 0.9308 -0.4356 31 1 -0.3633 -0.8426 -0.5883 32 1 5.6092 1.0010 0.5091 33 1 4.5561 2.4360 0.5012 34 1 3.9697 3.5390 -1.5734 35 1 4.6205 4.0274 -3.8909 36 1 6.7132 -0.4291 -6.4592 37 1 7.1693 0.5535 -3.8719 38 1 6.4972 0.0965 -1.5540 39 1 5.1296 -1.8068 1.0364 40 1 4.6075 -2.5353 -0.5015 41 1 5.6511 -1.0934 -0.5087 42 1 3.5725 -3.2126 1.1485 43 1 2.1298 -2.8602 2.1298 44 1 2.2061 -4.3534 1.1641 45 1 2.2540 -4.9105 -2.3251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600789126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:14 Heat of formation + Delta-G solvation = -12.428104 kcal Electronic energy + Delta-G solvation = -28181.140982 eV Core-core repulsion = 24357.341766 eV Total energy + Delta-G solvation = -3823.799216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.28304 -39.85935 -37.68954 -35.99663 -34.79581 -34.05959 -33.27366 -31.11932 -30.05196 -29.28741 -28.44034 -27.00376 -25.90534 -24.71933 -23.54412 -21.50250 -21.06975 -20.21807 -19.16640 -18.90613 -17.77256 -17.34508 -16.48316 -16.18312 -15.48032 -15.45241 -15.10539 -14.19669 -14.05196 -13.95048 -13.72148 -13.52239 -13.36051 -13.08702 -12.82621 -12.62189 -12.54447 -12.35349 -12.10805 -12.09192 -11.91586 -11.82305 -11.66681 -11.51017 -11.32568 -11.10260 -11.05437 -10.93648 -10.70792 -10.43185 -10.23307 -10.01813 -9.75800 -9.41467 -9.25299 -8.56130 -7.94092 -7.52396 -7.35437 -6.75517 -4.43544 2.23512 2.41062 2.55936 2.81508 2.99147 3.03371 3.05058 3.07458 3.35972 3.46946 3.90729 4.59934 4.71887 4.88464 4.93878 5.12844 5.14181 5.29947 5.46772 5.53650 5.56553 5.60124 5.62521 5.69821 5.73138 5.76443 5.82524 5.90028 5.97753 6.00752 6.11007 6.26781 6.31643 6.38485 6.55247 6.64017 6.89210 7.02986 7.05581 7.19652 7.30342 7.52493 7.56138 7.76341 7.98783 8.00435 8.07898 8.22020 8.24659 8.58176 8.84034 8.90509 10.18147 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.003703 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.849995 B = 7560.206310 C = 8595.777455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.073 3.927 3 N -0.293 5.293 4 N -0.343 5.343 5 C 0.191 3.809 6 C -0.245 4.245 7 C -0.062 4.062 8 C -0.226 4.226 9 C 0.120 3.880 10 C -0.461 4.461 11 H 0.078 0.922 12 C 0.073 3.927 13 N -0.794 5.794 14 Si 0.912 3.088 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.160 4.160 19 C -0.082 4.082 20 C 0.129 3.871 21 C -0.100 4.100 22 C -0.254 4.254 23 C 0.011 3.989 24 H 0.109 0.891 25 C -0.145 4.145 26 C 0.466 3.534 27 O -0.486 6.486 28 O -0.525 6.525 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.281 0.719 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 -9.036 12.184 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 N -0.115 5.115 4 N -0.123 5.123 5 C 0.072 3.928 6 C -0.247 4.247 7 C -0.081 4.081 8 C -0.245 4.245 9 C 0.117 3.883 10 C -0.491 4.491 11 H 0.096 0.904 12 C -0.145 4.145 13 N -0.419 5.419 14 Si 0.737 3.263 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.190 1.190 18 C -0.180 4.180 19 C -0.101 4.101 20 C -0.001 4.001 21 C -0.157 4.157 22 C -0.266 4.266 23 C -0.010 4.010 24 H 0.127 0.873 25 C -0.202 4.202 26 C 0.306 3.694 27 O -0.371 6.371 28 O -0.337 6.337 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.119 -7.517 12.244 15.616 hybrid contribution 0.463 -1.034 -1.661 2.011 sum -5.656 -8.551 10.583 14.734 Atomic orbital electron populations 1.20111 0.87492 1.03035 1.02220 1.21949 0.96317 0.90277 1.00698 1.77261 0.86815 1.22368 1.25049 1.49033 1.05311 1.03832 1.54085 1.20433 0.82345 0.93261 0.96719 1.19044 1.08608 1.01682 0.95403 1.20371 0.97219 0.95826 0.94652 1.21015 1.04057 1.03850 0.95600 1.17673 0.87702 0.90449 0.92452 1.19610 1.39589 0.94478 0.95380 0.90407 1.25935 0.93426 0.94510 1.00585 1.69803 1.34984 0.99808 1.37306 0.86301 0.80367 0.78665 0.80999 1.18806 1.20278 1.18975 1.21291 1.03044 1.00934 0.92690 1.20533 0.97534 0.96603 0.95434 1.20579 0.96101 0.85096 0.98319 1.20653 0.94342 0.98702 1.02052 1.18796 0.91819 0.93181 1.22812 1.19002 1.02025 0.90298 0.89651 0.87330 1.21890 1.01703 0.99920 0.96706 1.23809 0.76633 0.79396 0.89540 1.90854 1.36207 1.64404 1.45628 1.84511 1.75857 1.28155 1.45193 0.90885 0.91003 0.91145 0.89887 0.89613 0.89273 0.88861 0.90758 0.86309 0.89527 0.90755 0.90264 0.90137 0.91737 0.91104 0.91479 0.73607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 9.98 36.01 0.36 -0.49 16 2 C 0.07 1.23 7.22 -82.41 -0.59 0.64 16 3 N -0.29 -5.71 12.58 33.67 0.42 -5.28 16 4 N -0.34 -6.48 3.60 -58.31 -0.21 -6.69 16 5 C 0.19 3.44 6.18 -5.19 -0.03 3.41 16 6 C -0.24 -5.40 5.49 -104.33 -0.57 -5.97 16 7 C -0.06 -1.44 9.67 -39.66 -0.38 -1.83 16 8 C -0.23 -5.74 9.80 -38.88 -0.38 -6.12 16 9 C 0.12 3.27 5.54 -106.83 -0.59 2.67 16 10 C -0.46 -12.44 9.06 -37.74 -0.34 -12.78 16 11 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 12 C 0.07 1.87 5.25 -17.34 -0.09 1.78 16 13 N -0.79 -21.13 10.90 55.55 0.61 -20.53 16 14 Si 0.91 18.97 29.57 -169.99 -5.03 13.94 16 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 C -0.16 -4.21 8.65 -38.87 -0.34 -4.55 16 19 C -0.08 -1.91 9.44 -39.66 -0.37 -2.29 16 20 C 0.13 2.23 6.28 -82.27 -0.52 1.71 16 21 C -0.10 -1.46 7.93 36.00 0.29 -1.17 16 22 C -0.25 -4.07 4.35 -105.05 -0.46 -4.53 16 23 C 0.01 0.13 2.97 -92.92 -0.28 -0.15 16 24 H 0.11 1.11 7.12 -51.93 -0.37 0.74 16 25 C -0.14 -1.38 8.99 37.16 0.33 -1.05 16 26 C 0.47 6.55 6.65 36.00 0.24 6.79 16 27 O -0.49 -9.29 15.23 -18.75 -0.29 -9.57 16 28 O -0.52 -5.54 13.25 -39.24 -0.52 -6.06 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 32 H 0.08 1.27 7.60 -51.93 -0.39 0.87 16 33 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 34 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 37 H 0.12 3.22 6.28 -52.49 -0.33 2.89 16 38 H 0.09 1.79 5.93 -52.48 -0.31 1.48 16 39 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 40 H 0.08 1.16 5.44 -51.93 -0.28 0.88 16 41 H 0.08 1.28 5.29 -51.93 -0.27 1.00 16 42 H 0.06 0.64 5.31 -51.93 -0.28 0.36 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.54 8.02 -51.93 -0.42 0.13 16 45 H 0.41 2.90 9.10 45.56 0.41 3.32 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -33.65 370.07 -8.28 -41.93 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.12 Total: 10.60 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -3.73 Total: -23.92 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.82 Total: -32.50 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.81 Total: -15.63 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.65 -8.28 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600789126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.502 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds