Wall clock time and date at job start Tue Mar 31 2020 15:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30836 * 125.89822 * 2 1 4 4 N 1.40085 * 108.20674 * 180.14854 * 3 2 1 5 5 C 1.46498 * 126.03862 * 179.85335 * 4 3 2 6 6 C 1.50702 * 109.47206 * 269.69244 * 5 4 3 7 7 C 1.38634 * 119.75068 * 90.00006 * 6 5 4 8 8 C 1.37617 * 120.24624 * 179.97438 * 7 6 5 9 9 C 1.40710 * 119.74835 * 0.27471 * 8 7 6 10 10 C 1.41398 * 120.24546 * 179.70126 * 9 8 7 11 11 H 1.07995 * 119.99746 * 29.11227 * 10 9 8 12 12 C 1.39949 * 119.99976 * 209.11874 * 10 9 8 13 13 N 1.30827 * 119.99922 * 10.97861 * 12 10 9 14 14 Si 1.86802 * 119.99884 * 190.98644 * 12 10 9 15 15 H 1.48498 * 109.46971 * 59.99605 * 14 12 10 16 16 H 1.48498 * 109.46915 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46745 * 299.99152 * 14 12 10 18 18 C 1.40713 * 119.51131 * 359.47228 * 9 8 7 19 19 C 1.37619 * 119.74356 * 0.50585 * 18 9 8 20 20 C 1.34941 * 107.92416 * 359.59163 * 4 3 2 21 21 C 1.50699 * 126.12945 * 180.21608 * 20 4 3 22 22 C 1.35321 * 107.74763 * 0.24201 * 20 4 3 23 23 C 1.50705 * 126.04037 * 179.97438 * 22 20 4 24 24 H 1.08993 * 109.46694 * 175.07406 * 23 22 20 25 25 C 1.53001 * 109.46873 * 55.07676 * 23 22 20 26 26 C 1.50696 * 109.47316 * 295.07771 * 23 22 20 27 27 O 1.20827 * 120.00103 * 359.97438 * 26 23 22 28 28 O 1.34222 * 120.00034 * 180.02562 * 26 23 22 29 29 H 1.08999 * 109.46690 * 265.07968 * 1 2 3 30 30 H 1.09003 * 109.47333 * 25.07983 * 1 2 3 31 31 H 1.09002 * 109.47170 * 145.07781 * 1 2 3 32 32 H 1.09001 * 109.47346 * 149.69236 * 5 4 3 33 33 H 1.09004 * 109.47049 * 29.69271 * 5 4 3 34 34 H 1.07995 * 119.87490 * 359.95956 * 7 6 5 35 35 H 1.08000 * 120.12236 * 180.02562 * 8 7 6 36 36 H 0.97000 * 119.99884 * 180.02562 * 13 12 10 37 37 H 1.07994 * 120.13305 * 180.24703 * 18 9 8 38 38 H 1.08006 * 119.88104 * 179.74023 * 19 18 9 39 39 H 1.09005 * 109.47003 * 90.02841 * 21 20 4 40 40 H 1.08995 * 109.47573 * 210.02387 * 21 20 4 41 41 H 1.08999 * 109.47387 * 330.03125 * 21 20 4 42 42 H 1.09000 * 109.46986 * 303.98814 * 25 23 22 43 43 H 1.09006 * 109.47081 * 63.98657 * 25 23 22 44 44 H 1.08998 * 109.46857 * 183.98128 * 25 23 22 45 45 H 0.96702 * 117.00138 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0034 5 6 4.7899 1.5008 -0.0076 6 6 5.1953 1.7906 -1.4299 7 6 4.6683 2.8932 -2.0844 8 6 5.0319 3.1677 -3.3830 9 6 5.9377 2.3209 -4.0483 10 6 6.3136 2.5895 -5.3847 11 1 6.3219 3.6059 -5.7494 12 6 6.6749 1.5380 -6.2347 13 7 6.4624 0.2997 -5.8702 14 14 7.4608 1.9029 -7.8896 15 1 8.7282 2.6483 -7.6822 16 1 7.7469 0.6271 -8.5937 17 1 6.5322 2.7231 -8.7083 18 6 6.4703 1.2077 -3.3723 19 6 6.0929 0.9527 -2.0736 20 6 3.6143 -0.7152 0.0036 21 6 4.8350 -1.5988 0.0077 22 6 2.3271 -1.1330 0.0059 23 6 1.8600 -2.5658 0.0129 24 1 0.7740 -2.5933 0.1015 25 6 2.4872 -3.3009 1.1991 26 6 2.2765 -3.2363 -1.2708 27 8 2.8894 -2.6144 -2.1060 28 8 1.9658 -4.5240 -1.4869 29 1 -0.3633 -0.0881 1.0239 30 1 -0.3634 0.9308 -0.4356 31 1 -0.3633 -0.8426 -0.5883 32 1 5.6092 1.0010 0.5091 33 1 4.5561 2.4360 0.5012 34 1 3.9697 3.5390 -1.5734 35 1 4.6205 4.0274 -3.8909 36 1 6.7132 -0.4291 -6.4592 37 1 7.1693 0.5535 -3.8719 38 1 6.4972 0.0965 -1.5540 39 1 5.1296 -1.8068 1.0364 40 1 4.6075 -2.5353 -0.5015 41 1 5.6511 -1.0934 -0.5087 42 1 3.5725 -3.2126 1.1485 43 1 2.1298 -2.8602 2.1298 44 1 2.2061 -4.3534 1.1641 45 1 2.2540 -4.9105 -2.3251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600789126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:13 Heat of formation + Delta-G solvation = -32.671464 kcal Electronic energy + Delta-G solvation = -28182.018800 eV Core-core repulsion = 24357.341766 eV Total energy + Delta-G solvation = -3824.677034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.51327 -40.98886 -39.55242 -37.03975 -36.28770 -35.40020 -34.74344 -32.65705 -31.50933 -30.97785 -29.93597 -28.11894 -27.50655 -25.74704 -25.10782 -23.07128 -22.60184 -21.89921 -20.43713 -20.12851 -19.30283 -18.83537 -17.57979 -17.53600 -17.18351 -16.68080 -16.51425 -15.82203 -15.66269 -15.50252 -14.90747 -14.74992 -14.45969 -14.38845 -14.15283 -13.96708 -13.83347 -13.64796 -13.49718 -13.31303 -13.22085 -13.12692 -12.90649 -12.84231 -12.76816 -12.71021 -12.47339 -12.38376 -12.18213 -11.92342 -11.62163 -11.39882 -11.32360 -11.20643 -11.13524 -9.89789 -9.46898 -9.32802 -9.17142 -8.66329 -6.45957 0.68970 1.03761 1.07329 1.33270 1.33956 1.42375 1.46452 1.66984 1.87029 2.16640 2.46361 2.71224 3.55784 3.64781 3.77344 3.93786 4.00878 4.12203 4.18342 4.19037 4.34138 4.38046 4.49129 4.51825 4.54667 4.62140 4.68943 4.81790 4.85735 4.89964 4.98439 5.04246 5.07654 5.08720 5.16375 5.25618 5.32792 5.36567 5.42999 5.61341 5.72039 5.83049 5.87587 6.01210 6.07458 6.23936 6.30230 6.60635 6.85791 6.92295 6.93084 7.10965 8.29877 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.003703 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.849995 B = 7560.206310 C = 8595.777455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.066 3.934 3 N -0.336 5.336 4 N -0.362 5.362 5 C 0.194 3.806 6 C -0.230 4.230 7 C -0.069 4.069 8 C -0.245 4.245 9 C 0.087 3.913 10 C -0.501 4.501 11 H 0.076 0.924 12 C 0.031 3.969 13 N -0.832 5.832 14 Si 0.988 3.012 15 H -0.256 1.256 16 H -0.267 1.267 17 H -0.261 1.261 18 C -0.184 4.184 19 C -0.083 4.083 20 C 0.113 3.887 21 C -0.096 4.096 22 C -0.258 4.258 23 C 0.010 3.990 24 H 0.135 0.865 25 C -0.139 4.139 26 C 0.474 3.526 27 O -0.547 6.547 28 O -0.509 6.509 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.287 0.713 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 -10.774 13.882 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 N -0.158 5.158 4 N -0.142 5.142 5 C 0.075 3.925 6 C -0.232 4.232 7 C -0.088 4.088 8 C -0.264 4.264 9 C 0.085 3.915 10 C -0.531 4.531 11 H 0.094 0.906 12 C -0.183 4.183 13 N -0.458 5.458 14 Si 0.808 3.192 15 H -0.180 1.180 16 H -0.191 1.191 17 H -0.185 1.185 18 C -0.204 4.204 19 C -0.102 4.102 20 C -0.016 4.016 21 C -0.153 4.153 22 C -0.269 4.269 23 C -0.011 4.011 24 H 0.153 0.847 25 C -0.196 4.196 26 C 0.318 3.682 27 O -0.436 6.436 28 O -0.323 6.323 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -7.136 -9.289 13.968 18.229 hybrid contribution 0.617 -0.602 -2.012 2.189 sum -6.520 -9.891 11.956 16.831 Atomic orbital electron populations 1.20287 0.84638 1.03462 1.04391 1.22734 0.98232 0.90029 0.98955 1.77200 0.87406 1.24064 1.27157 1.48877 1.05153 1.04425 1.55734 1.20434 0.83440 0.94666 0.93961 1.19493 1.06398 0.99975 0.97346 1.20649 0.97390 0.96655 0.94121 1.21199 1.04393 1.04064 0.96778 1.18014 0.88785 0.91487 0.93260 1.19870 1.42033 0.95043 0.96153 0.90551 1.26831 0.93184 0.93861 1.04390 1.69881 1.36045 1.00800 1.39050 0.85172 0.79368 0.78852 0.75811 1.17994 1.19078 1.18518 1.21284 1.03849 1.01134 0.94101 1.20828 0.97367 0.97409 0.94556 1.21118 0.97620 0.84771 0.98091 1.20701 0.92801 0.97789 1.04048 1.19237 0.91324 0.94901 1.21429 1.19198 1.03680 0.88342 0.89831 0.84738 1.21884 1.01208 1.00724 0.95791 1.24139 0.75060 0.79800 0.89245 1.90852 1.39178 1.65886 1.47691 1.84466 1.75052 1.26480 1.46270 0.87924 0.91638 0.89438 0.86913 0.88358 0.87515 0.88711 0.90210 0.88003 0.86978 0.87152 0.90519 0.91746 0.92239 0.89689 0.89612 0.71749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 9.98 71.24 0.71 -0.81 16 2 C 0.07 2.12 7.22 43.10 0.31 2.43 16 3 N -0.34 -12.81 12.58 -47.39 -0.60 -13.41 16 4 N -0.36 -13.26 3.60 -338.40 -1.22 -14.47 16 5 C 0.19 6.73 6.18 85.63 0.53 7.26 16 6 C -0.23 -10.12 5.49 -19.67 -0.11 -10.23 16 7 C -0.07 -3.29 9.67 22.22 0.21 -3.08 16 8 C -0.24 -12.97 9.80 22.73 0.22 -12.75 16 9 C 0.09 4.97 5.54 -21.29 -0.12 4.85 16 10 C -0.50 -28.41 9.06 23.46 0.21 -28.20 16 11 H 0.08 4.15 7.87 -2.91 -0.02 4.12 16 12 C 0.03 1.65 5.25 85.26 0.45 2.10 16 13 N -0.83 -46.04 10.90 21.83 0.24 -45.80 16 14 Si 0.99 39.76 29.57 68.60 2.03 41.79 16 15 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 16 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 C -0.18 -10.12 8.65 22.73 0.20 -9.93 16 19 C -0.08 -3.92 9.44 22.22 0.21 -3.71 16 20 C 0.11 3.73 6.28 41.41 0.26 3.99 16 21 C -0.10 -2.63 7.93 71.24 0.56 -2.06 16 22 C -0.26 -7.73 4.35 -20.14 -0.09 -7.82 16 23 C 0.01 0.21 2.97 -12.29 -0.04 0.17 16 24 H 0.13 2.20 7.12 -2.39 -0.02 2.19 16 25 C -0.14 -2.13 8.99 71.98 0.65 -1.48 16 26 C 0.47 12.43 6.65 71.23 0.47 12.90 16 27 O -0.55 -20.72 15.23 21.96 0.33 -20.39 16 28 O -0.51 -9.38 13.25 -51.34 -0.68 -10.06 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.60 7.56 -2.39 -0.02 1.58 16 32 H 0.11 3.18 7.60 -2.39 -0.02 3.17 16 33 H 0.10 3.14 8.08 -2.38 -0.02 3.12 16 34 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.09 4.81 8.06 -2.91 -0.02 4.78 16 36 H 0.29 14.45 8.30 -92.71 -0.77 13.68 16 37 H 0.10 5.85 6.28 -2.91 -0.02 5.83 16 38 H 0.11 4.62 5.93 -2.91 -0.02 4.60 16 39 H 0.11 2.15 7.75 -2.38 -0.02 2.14 16 40 H 0.08 2.15 5.44 -2.39 -0.01 2.14 16 41 H 0.06 1.96 5.29 -2.39 -0.01 1.95 16 42 H 0.06 0.98 5.31 -2.39 -0.01 0.97 16 43 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.09 1.02 8.02 -2.39 -0.02 1.00 16 45 H 0.42 5.11 9.10 -74.06 -0.67 4.44 16 Total: -1.00 -77.44 370.07 5.12 -72.31 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.37 Total: 36.37 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 4.65 Total: -46.36 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -1.57 Total: -73.68 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.35 Total: -30.45 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -77.44 5.12 -72.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600789126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.643 kcal (2) G-P(sol) polarization free energy of solvation -77.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds