Wall clock time and date at job start Tue Mar 31 2020 15:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37844 * 125.89560 * 2 1 4 4 C 1.47106 * 127.02575 * 359.94134 * 3 2 1 5 5 O 1.21552 * 119.99945 * 0.02562 * 4 3 2 6 6 O 1.34788 * 120.00212 * 180.02562 * 4 3 2 7 7 C 1.46743 * 105.95090 * 179.97438 * 3 2 1 8 8 C 1.34435 * 106.37809 * 0.02562 * 7 3 2 9 9 C 1.50698 * 125.46013 * 179.97438 * 8 7 3 10 10 N 1.46499 * 109.47094 * 95.02418 * 9 8 7 11 11 C 1.39675 * 119.99651 * 180.02562 * 10 9 8 12 12 C 1.38914 * 120.07321 * 179.97438 * 11 10 9 13 13 C 1.38100 * 119.92419 * 179.97438 * 12 11 10 14 14 C 1.38288 * 120.07489 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.92199 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47001 * 90.00208 * 15 14 13 17 17 H 1.08005 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00081 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99848 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00321 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47198 * 120.00527 * 20 18 16 23 23 H 1.48498 * 109.47360 * 240.00281 * 20 18 16 24 24 C 1.38283 * 120.14964 * 0.27921 * 14 13 12 25 25 C 1.38105 * 120.07446 * 359.44518 * 24 14 13 26 26 N 1.34630 * 125.89839 * 180.25545 * 2 1 3 27 27 C 1.46497 * 124.81085 * 0.03908 * 26 2 1 28 28 H 1.09000 * 109.46808 * 90.02701 * 1 2 3 29 29 H 1.09000 * 109.46967 * 210.02658 * 1 2 3 30 30 H 1.08999 * 109.47404 * 330.02636 * 1 2 3 31 31 H 0.96699 * 117.00150 * 179.97438 * 6 4 3 32 32 H 1.08002 * 126.81201 * 179.97438 * 7 3 2 33 33 H 1.08998 * 109.47181 * 335.01756 * 9 8 7 34 34 H 1.08999 * 109.46717 * 215.02311 * 9 8 7 35 35 H 0.96996 * 119.99941 * 359.97438 * 10 9 8 36 36 H 1.07999 * 120.03471 * 359.95073 * 12 11 10 37 37 H 1.08005 * 119.96293 * 179.97438 * 13 12 11 38 38 H 1.09000 * 109.46646 * 209.99665 * 15 14 13 39 39 H 1.09000 * 109.47248 * 330.00383 * 15 14 13 40 40 H 0.96998 * 119.99944 * 179.97438 * 19 18 16 41 41 H 1.08001 * 119.96059 * 179.69879 * 24 14 13 42 42 H 1.07994 * 120.03590 * 180.27360 * 25 24 14 43 43 H 1.09010 * 109.47183 * 270.17396 * 27 26 2 44 44 H 1.09008 * 109.47075 * 30.16849 * 27 26 2 45 45 H 1.08999 * 109.47760 * 150.17186 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8831 2.5228 -0.0012 5 8 0.6984 2.7946 -0.0019 6 8 2.8010 3.5099 -0.0016 7 6 3.6946 0.6161 0.0006 8 6 3.6109 -0.7257 0.0004 9 6 4.7816 -1.6746 0.0003 10 7 5.0847 -2.0763 1.3761 11 6 6.1378 -2.9580 1.6302 12 6 6.4269 -3.3395 2.9343 13 6 7.4685 -4.2119 3.1820 14 6 8.2229 -4.7059 2.1336 15 6 9.3584 -5.6581 2.4078 16 6 8.8450 -7.0746 2.3753 17 1 7.8009 -7.2662 2.1764 18 6 9.7083 -8.1261 2.5994 19 7 10.9797 -7.8928 2.8421 20 14 9.0719 -9.8818 2.5598 21 1 7.6156 -9.8741 2.2687 22 1 9.7837 -10.6426 1.5016 23 1 9.3104 -10.5247 3.8770 24 6 7.9411 -4.3240 0.8347 25 6 6.8974 -3.4565 0.5794 26 7 2.2964 -1.0906 -0.0049 27 6 1.8124 -2.4733 -0.0118 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 2.4690 4.4181 -0.0027 32 1 4.5979 1.2082 0.0004 33 1 5.6505 -1.1797 -0.4336 34 1 4.5339 -2.5570 -0.5897 35 1 4.5546 -1.7294 2.1106 36 1 5.8381 -2.9541 3.7535 37 1 7.6941 -4.5086 4.1957 38 1 10.1289 -5.5334 1.6469 39 1 9.7804 -5.4471 3.3904 40 1 11.5869 -8.6324 3.0001 41 1 8.5354 -4.7079 0.0187 42 1 6.6751 -3.1621 -0.4356 43 1 1.6888 -2.8202 1.0142 44 1 0.8540 -2.5202 -0.5291 45 1 2.5340 -3.1083 -0.5257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607518966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:48 Heat of formation + Delta-G solvation = -27.649783 kcal Electronic energy + Delta-G solvation = -26175.889274 eV Core-core repulsion = 22351.429997 eV Total energy + Delta-G solvation = -3824.459278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.93042 -39.87952 -38.87935 -36.24723 -35.75615 -33.32566 -33.18178 -32.21385 -30.46419 -30.14765 -28.22796 -27.47692 -26.07271 -24.85794 -23.15352 -22.78975 -21.82374 -20.86582 -20.02647 -19.01437 -18.18299 -17.43136 -16.67078 -16.26967 -16.17991 -15.83700 -15.55236 -15.29773 -14.79302 -14.62008 -14.21827 -13.99407 -13.56301 -13.54948 -13.46946 -13.17731 -13.15519 -12.82584 -12.76594 -12.50097 -12.44052 -12.34627 -11.99561 -11.75002 -11.70666 -11.25687 -11.22170 -10.74354 -10.68803 -10.52754 -10.13174 -9.81024 -9.44082 -9.08174 -9.04362 -8.55038 -8.39186 -8.26058 -6.81717 -5.99004 -4.03417 1.12936 1.82379 2.09878 2.23751 2.33569 2.97929 3.08048 3.30144 3.37762 3.42490 3.74354 4.19139 4.28219 4.38051 4.42307 4.62331 4.66593 4.70613 4.96664 5.00465 5.14049 5.19605 5.26333 5.33096 5.34381 5.47925 5.50840 5.53797 5.55726 5.85965 6.01881 6.09990 6.28325 6.30182 6.35477 6.39870 6.65124 6.69165 6.73524 6.81837 7.28022 7.29286 7.38771 7.60081 7.78664 7.78939 7.96525 7.96679 8.00062 8.39627 9.02656 9.60047 11.09490 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026169 B = 0.001975 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.727364 B =14173.812086 C =14815.740619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.126 3.874 3 C -0.238 4.238 4 C 0.561 3.439 5 O -0.534 6.534 6 O -0.513 6.513 7 C -0.116 4.116 8 C -0.007 4.007 9 C 0.202 3.798 10 N -0.755 5.755 11 C 0.180 3.820 12 C -0.190 4.190 13 C -0.080 4.080 14 C -0.082 4.082 15 C 0.052 3.948 16 C -0.507 4.507 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.081 4.081 25 C -0.194 4.194 26 N -0.426 5.426 27 C 0.062 3.938 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.410 0.590 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.394 0.606 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.260 0.740 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.014 18.151 -7.034 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.006 3.994 3 C -0.246 4.246 4 C 0.408 3.592 5 O -0.426 6.426 6 O -0.323 6.323 7 C -0.140 4.140 8 C -0.114 4.114 9 C 0.077 3.923 10 N -0.390 5.390 11 C 0.081 3.919 12 C -0.212 4.212 13 C -0.098 4.098 14 C -0.084 4.084 15 C 0.015 3.985 16 C -0.545 4.545 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.099 4.099 25 C -0.217 4.217 26 N -0.101 5.101 27 C -0.079 4.079 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.268 0.732 32 H 0.172 0.828 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.064 17.366 -7.209 27.497 hybrid contribution -0.658 -0.352 0.260 0.791 sum -20.722 17.013 -6.949 27.697 Atomic orbital electron populations 1.20630 0.86644 1.04513 1.03722 1.20576 0.93644 0.84869 1.00301 1.19214 0.93726 0.88610 1.23045 1.19764 0.82752 0.85340 0.71359 1.90848 1.18423 1.84661 1.48637 1.84601 1.42206 1.19436 1.86096 1.21931 0.95945 0.92202 1.03966 1.20252 0.83941 0.94696 1.12535 1.19536 0.92350 0.94833 0.85546 1.44442 1.36072 1.52338 1.06107 1.17571 0.89016 0.91685 0.93633 1.20455 1.02122 1.04608 0.94062 1.20841 0.94254 0.95517 0.99236 1.20476 0.98939 0.96827 0.92135 1.18264 0.90716 0.91918 0.97603 1.21159 0.95142 0.90319 1.47929 0.92542 1.25029 0.94891 0.99186 0.95431 1.69972 1.03168 1.31555 1.48780 0.86519 0.79032 0.84783 0.77596 1.19755 1.21018 1.21016 1.20851 0.96217 0.95939 0.96937 1.20494 0.99949 1.04400 0.96827 1.43520 1.05493 1.06442 1.54677 1.22217 1.01811 0.79581 1.04303 0.90026 0.91238 0.88108 0.73237 0.82837 0.90193 0.92002 0.77165 0.87469 0.86562 0.95641 0.95652 0.93002 0.86594 0.87375 0.90027 0.89363 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 9.28 36.00 0.33 -0.34 16 2 C 0.13 1.15 6.93 -81.51 -0.56 0.58 16 3 C -0.24 -2.51 6.33 -103.01 -0.65 -3.16 16 4 C 0.56 5.96 8.32 34.33 0.29 6.24 16 5 O -0.53 -6.56 15.66 -19.31 -0.30 -6.87 16 6 O -0.51 -4.20 13.33 -40.73 -0.54 -4.75 16 7 C -0.12 -1.16 10.89 -37.49 -0.41 -1.57 16 8 C -0.01 -0.07 6.21 -81.89 -0.51 -0.58 16 9 C 0.20 1.95 5.01 -5.20 -0.03 1.92 16 10 N -0.76 -8.71 5.73 -59.81 -0.34 -9.06 16 11 C 0.18 2.72 6.65 -83.78 -0.56 2.16 16 12 C -0.19 -3.12 9.90 -39.38 -0.39 -3.51 16 13 C -0.08 -1.55 9.69 -39.61 -0.38 -1.93 16 14 C -0.08 -1.78 5.07 -104.58 -0.53 -2.31 16 15 C 0.05 1.34 5.10 -29.03 -0.15 1.19 16 16 C -0.51 -14.23 9.09 -34.44 -0.31 -14.54 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 20 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.08 -1.56 9.69 -39.61 -0.38 -1.94 16 25 C -0.19 -3.13 9.31 -39.38 -0.37 -3.50 16 26 N -0.43 -3.53 3.08 -115.00 -0.35 -3.89 16 27 C 0.06 0.35 10.39 59.85 0.62 0.97 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.34 7.60 -51.93 -0.39 -0.05 16 30 H 0.10 0.83 6.51 -51.93 -0.34 0.49 16 31 H 0.41 1.44 9.11 45.56 0.42 1.86 16 32 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 34 H 0.06 0.57 6.89 -51.93 -0.36 0.21 16 35 H 0.39 4.27 8.48 -40.82 -0.35 3.92 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 38 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 42 H 0.11 1.47 6.73 -52.49 -0.35 1.11 16 43 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 44 H 0.09 0.32 7.51 -51.92 -0.39 -0.07 16 45 H 0.09 0.52 6.97 -51.93 -0.36 0.16 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -33.81 383.76 -9.59 -43.40 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.46 Total: 3.51 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -4.09 Total: -18.82 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.04 Total: -38.77 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.85 Total: -11.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.81 -9.59 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607518966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.752 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds