Wall clock time and date at job start Tue Mar 31 2020 15:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30837 * 125.89683 * 2 1 4 4 N 1.40092 * 108.20185 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03329 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47212 * 90.02373 * 5 4 3 7 7 C 1.38636 * 119.74883 * 90.00023 * 6 5 4 8 8 C 1.37620 * 120.25102 * 179.97438 * 7 6 5 9 9 C 1.40717 * 119.74444 * 0.27063 * 8 7 6 10 10 C 1.41397 * 120.24553 * 179.70220 * 9 8 7 11 11 H 1.07997 * 119.99566 * 24.28741 * 10 9 8 12 12 C 1.39947 * 119.99746 * 204.28899 * 10 9 8 13 13 N 1.30821 * 120.00278 * 17.73983 * 12 10 9 14 14 Si 1.86794 * 119.99656 * 197.73280 * 12 10 9 15 15 H 1.48496 * 109.47373 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47179 * 120.00490 * 14 12 10 17 17 H 1.48503 * 109.47456 * 240.00064 * 14 12 10 18 18 C 1.40722 * 119.50957 * 359.47998 * 9 8 7 19 19 C 1.37612 * 119.74268 * 0.49927 * 18 9 8 20 20 C 1.34940 * 107.92660 * 0.26377 * 4 3 2 21 21 C 1.50698 * 126.12487 * 179.73784 * 20 4 3 22 22 C 1.35315 * 107.74676 * 359.57603 * 20 4 3 23 23 C 1.50700 * 126.04110 * 180.16676 * 22 20 4 24 24 C 1.53000 * 109.46930 * 270.28436 * 23 22 20 25 25 C 1.50700 * 109.46930 * 180.02562 * 24 23 22 26 26 O 1.20824 * 120.00298 * 359.97438 * 25 24 23 27 27 O 1.34236 * 119.99619 * 179.97438 * 25 24 23 28 28 H 1.09000 * 109.47044 * 90.03220 * 1 2 3 29 29 H 1.09000 * 109.47298 * 210.02614 * 1 2 3 30 30 H 1.08993 * 109.47761 * 330.02675 * 1 2 3 31 31 H 1.09005 * 109.46938 * 330.02444 * 5 4 3 32 32 H 1.08998 * 109.46999 * 210.02690 * 5 4 3 33 33 H 1.08001 * 119.87890 * 359.95339 * 7 6 5 34 34 H 1.08002 * 120.12811 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00115 * 179.97438 * 13 12 10 36 36 H 1.07995 * 120.12623 * 180.25111 * 18 9 8 37 37 H 1.08003 * 119.87601 * 179.75109 * 19 18 9 38 38 H 1.09002 * 109.47379 * 90.02048 * 21 20 4 39 39 H 1.09000 * 109.47068 * 210.01864 * 21 20 4 40 40 H 1.09003 * 109.47195 * 330.01918 * 21 20 4 41 41 H 1.09006 * 109.47129 * 30.28109 * 23 22 20 42 42 H 1.09002 * 109.47507 * 150.28195 * 23 22 20 43 43 H 1.09005 * 109.46858 * 299.99240 * 24 23 22 44 44 H 1.08994 * 109.47261 * 59.99892 * 24 23 22 45 45 H 0.96697 * 116.99690 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0003 6 6 5.1949 1.7985 1.4209 7 6 6.0919 0.9640 2.0697 8 6 6.4693 1.2264 3.3669 9 6 5.9366 2.3435 4.0365 10 6 6.3122 2.6196 5.3715 11 1 7.2537 2.2540 5.7541 12 6 5.4640 3.3665 6.1968 13 7 4.2041 3.5143 5.8773 14 14 6.1309 4.1521 7.7547 15 1 7.5762 3.8381 7.8880 16 1 5.9493 5.6242 7.6836 17 1 5.3976 3.6193 8.9310 18 6 5.0310 3.1867 3.3662 19 6 4.6682 2.9051 2.0690 20 6 3.6142 -0.7153 -0.0050 21 6 4.8350 -1.5988 -0.0120 22 6 2.3271 -1.1330 0.0006 23 6 1.8599 -2.5657 0.0009 24 6 1.7018 -3.0509 -1.4415 25 6 1.2339 -4.4834 -1.4412 26 8 1.0467 -5.0576 -0.3947 27 8 1.0253 -5.1215 -2.6036 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8901 0.5134 31 1 4.5562 2.4331 -0.5139 32 1 5.6093 0.9981 -0.5134 33 1 6.4958 0.1044 1.5554 34 1 7.1685 0.5752 3.8703 35 1 3.6161 4.0317 6.4496 36 1 4.6193 4.0490 3.8693 37 1 3.9702 3.5485 1.5539 38 1 5.1321 -1.8163 1.0139 39 1 4.6062 -2.5305 -0.5293 40 1 5.6498 -1.0886 -0.5258 41 1 2.5935 -3.1870 0.5148 42 1 0.9011 -2.6352 0.5148 43 1 0.9681 -2.4296 -1.9554 44 1 2.6605 -2.9815 -1.9554 45 1 0.7259 -6.0396 -2.5528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608011335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:07 Heat of formation + Delta-G solvation = -23.631320 kcal Electronic energy + Delta-G solvation = -27058.835323 eV Core-core repulsion = 23234.550299 eV Total energy + Delta-G solvation = -3824.285024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10038 -40.32003 -37.72597 -36.41116 -34.82400 -33.94061 -33.25466 -31.36594 -30.19407 -29.40921 -28.47701 -27.32345 -26.02328 -24.61099 -23.27405 -21.22746 -21.11093 -20.25733 -19.18429 -18.98978 -18.20421 -17.41091 -16.75414 -16.32985 -15.86880 -15.55769 -15.20794 -14.23925 -14.18897 -13.98722 -13.88953 -13.48729 -13.33893 -13.17006 -12.95482 -12.69379 -12.63572 -12.44601 -12.19423 -12.03588 -11.97038 -11.74346 -11.66402 -11.62459 -11.56402 -11.15171 -11.08030 -11.02905 -10.75779 -10.72024 -10.49091 -10.01337 -9.80625 -9.50081 -9.24640 -8.60520 -7.91259 -7.56650 -7.46744 -6.87010 -4.47376 2.03843 2.23436 2.49359 2.79421 2.93476 2.98948 3.02237 3.07147 3.13774 3.34014 3.85012 4.51517 4.78388 4.84102 4.89603 4.96760 5.15004 5.23334 5.39324 5.47123 5.53207 5.55548 5.61922 5.64565 5.73459 5.77492 5.79921 5.86449 5.95627 6.07505 6.12261 6.19340 6.29106 6.31598 6.40873 6.52991 6.85538 6.96306 7.06810 7.17088 7.24312 7.49965 7.51178 7.70333 7.71105 7.94983 7.97722 8.18049 8.21907 8.53489 8.77759 8.85742 10.06727 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.002529 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.116227 B =11069.809043 C =11114.032988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.067 3.933 3 N -0.291 5.291 4 N -0.343 5.343 5 C 0.192 3.808 6 C -0.250 4.250 7 C -0.069 4.069 8 C -0.231 4.231 9 C 0.118 3.882 10 C -0.456 4.456 11 H 0.080 0.920 12 C 0.075 3.925 13 N -0.784 5.784 14 Si 0.909 3.091 15 H -0.259 1.259 16 H -0.271 1.271 17 H -0.273 1.273 18 C -0.170 4.170 19 C -0.071 4.071 20 C 0.098 3.902 21 C -0.092 4.092 22 C -0.258 4.258 23 C -0.020 4.020 24 C -0.107 4.107 25 C 0.476 3.524 26 O -0.515 6.515 27 O -0.522 6.522 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.282 0.718 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -10.176 -13.782 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 N -0.113 5.113 4 N -0.123 5.123 5 C 0.073 3.927 6 C -0.253 4.253 7 C -0.087 4.087 8 C -0.250 4.250 9 C 0.116 3.884 10 C -0.485 4.485 11 H 0.098 0.902 12 C -0.145 4.145 13 N -0.408 5.408 14 Si 0.733 3.267 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.199 1.199 18 C -0.190 4.190 19 C -0.090 4.090 20 C -0.032 4.032 21 C -0.151 4.151 22 C -0.269 4.269 23 C -0.059 4.059 24 C -0.145 4.145 25 C 0.319 3.681 26 O -0.403 6.403 27 O -0.334 6.334 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.133 -8.417 -13.438 16.386 hybrid contribution -0.013 -1.063 0.910 1.399 sum -4.146 -9.480 -12.529 16.249 Atomic orbital electron populations 1.20108 0.87542 1.03046 1.02168 1.22024 0.96384 0.90483 1.00938 1.77306 0.86835 1.22541 1.24639 1.49103 1.05345 1.03830 1.54019 1.20410 0.82350 0.93237 0.96717 1.19012 1.08395 1.02396 0.95484 1.20343 0.96925 0.96687 0.94791 1.20933 1.08134 1.00286 0.95675 1.17680 0.89354 0.88851 0.92555 1.19698 1.04407 1.28634 0.95795 0.90197 1.25979 0.94102 0.94371 1.00004 1.69839 1.04131 1.29978 1.36888 0.86243 0.80476 0.79417 0.80544 1.18285 1.19570 1.19860 1.21302 1.03148 1.01411 0.93097 1.20521 0.97392 0.95955 0.95093 1.20765 0.96339 0.85298 1.00776 1.20472 0.93358 0.97632 1.03602 1.19314 0.91334 0.95037 1.21254 1.19539 1.02396 0.91091 0.92836 1.21489 1.03942 0.87707 1.01373 1.23834 0.73361 0.90185 0.80729 1.90734 1.48017 1.68312 1.33276 1.84569 1.80086 1.32260 1.36461 0.91177 0.90888 0.91116 0.89722 0.89952 0.89557 0.88897 0.90670 0.86402 0.89346 0.89898 0.90438 0.91213 0.90846 0.90603 0.87685 0.87877 0.73477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.26 36.00 0.37 -0.48 16 2 C 0.07 1.08 7.22 -82.41 -0.59 0.49 16 3 N -0.29 -5.51 12.58 33.67 0.42 -5.08 16 4 N -0.34 -6.09 3.60 -58.32 -0.21 -6.30 16 5 C 0.19 3.28 6.36 -5.20 -0.03 3.24 16 6 C -0.25 -5.26 5.49 -104.33 -0.57 -5.83 16 7 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 8 C -0.23 -5.50 9.80 -38.87 -0.38 -5.89 16 9 C 0.12 3.11 5.57 -106.82 -0.60 2.52 16 10 C -0.46 -11.92 9.05 -37.74 -0.34 -12.26 16 11 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 12 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 13 N -0.78 -20.26 10.95 55.55 0.61 -19.65 16 14 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 15 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 16 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 19 C -0.07 -1.65 9.67 -39.66 -0.38 -2.04 16 20 C 0.10 1.52 6.93 -82.27 -0.57 0.94 16 21 C -0.09 -1.11 9.50 36.00 0.34 -0.77 16 22 C -0.26 -3.80 5.35 -105.05 -0.56 -4.36 16 23 C -0.02 -0.24 4.41 -27.88 -0.12 -0.36 16 24 C -0.11 -0.98 5.79 -27.88 -0.16 -1.15 16 25 C 0.48 4.67 8.33 36.01 0.30 4.97 16 26 O -0.52 -6.75 16.74 -18.75 -0.31 -7.07 16 27 O -0.52 -3.87 13.42 -39.27 -0.53 -4.39 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.78 7.26 -51.93 -0.38 0.40 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 32 H 0.08 1.17 6.98 -51.93 -0.36 0.81 16 33 H 0.09 1.55 7.83 -52.49 -0.41 1.14 16 34 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 36 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 37 H 0.09 1.97 8.06 -52.48 -0.42 1.55 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 40 H 0.07 0.75 7.07 -51.93 -0.37 0.38 16 41 H 0.07 0.90 7.75 -51.93 -0.40 0.49 16 42 H 0.08 0.92 7.21 -51.93 -0.37 0.54 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.41 1.37 9.10 45.56 0.41 1.78 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -32.01 383.70 -8.92 -40.94 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.54 Total: 8.21 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -4.12 Total: -25.78 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.82 Total: -31.04 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.84 Total: -11.46 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.01 -8.92 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608011335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.305 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds