Wall clock time and date at job start Tue Mar 31 2020 15:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30837 * 125.89683 * 2 1 4 4 N 1.40092 * 108.20185 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03329 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47212 * 90.02373 * 5 4 3 7 7 C 1.38636 * 119.74883 * 90.00023 * 6 5 4 8 8 C 1.37620 * 120.25102 * 179.97438 * 7 6 5 9 9 C 1.40717 * 119.74444 * 0.27063 * 8 7 6 10 10 C 1.41397 * 120.24553 * 179.70220 * 9 8 7 11 11 H 1.07997 * 119.99566 * 24.28741 * 10 9 8 12 12 C 1.39947 * 119.99746 * 204.28899 * 10 9 8 13 13 N 1.30821 * 120.00278 * 17.73983 * 12 10 9 14 14 Si 1.86794 * 119.99656 * 197.73280 * 12 10 9 15 15 H 1.48496 * 109.47373 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47179 * 120.00490 * 14 12 10 17 17 H 1.48503 * 109.47456 * 240.00064 * 14 12 10 18 18 C 1.40722 * 119.50957 * 359.47998 * 9 8 7 19 19 C 1.37612 * 119.74268 * 0.49927 * 18 9 8 20 20 C 1.34940 * 107.92660 * 0.26377 * 4 3 2 21 21 C 1.50698 * 126.12487 * 179.73784 * 20 4 3 22 22 C 1.35315 * 107.74676 * 359.57603 * 20 4 3 23 23 C 1.50700 * 126.04110 * 180.16676 * 22 20 4 24 24 C 1.53000 * 109.46930 * 270.28436 * 23 22 20 25 25 C 1.50700 * 109.46930 * 180.02562 * 24 23 22 26 26 O 1.20824 * 120.00298 * 359.97438 * 25 24 23 27 27 O 1.34236 * 119.99619 * 179.97438 * 25 24 23 28 28 H 1.09000 * 109.47044 * 90.03220 * 1 2 3 29 29 H 1.09000 * 109.47298 * 210.02614 * 1 2 3 30 30 H 1.08993 * 109.47761 * 330.02675 * 1 2 3 31 31 H 1.09005 * 109.46938 * 330.02444 * 5 4 3 32 32 H 1.08998 * 109.46999 * 210.02690 * 5 4 3 33 33 H 1.08001 * 119.87890 * 359.95339 * 7 6 5 34 34 H 1.08002 * 120.12811 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00115 * 179.97438 * 13 12 10 36 36 H 1.07995 * 120.12623 * 180.25111 * 18 9 8 37 37 H 1.08003 * 119.87601 * 179.75109 * 19 18 9 38 38 H 1.09002 * 109.47379 * 90.02048 * 21 20 4 39 39 H 1.09000 * 109.47068 * 210.01864 * 21 20 4 40 40 H 1.09003 * 109.47195 * 330.01918 * 21 20 4 41 41 H 1.09006 * 109.47129 * 30.28109 * 23 22 20 42 42 H 1.09002 * 109.47507 * 150.28195 * 23 22 20 43 43 H 1.09005 * 109.46858 * 299.99240 * 24 23 22 44 44 H 1.08994 * 109.47261 * 59.99892 * 24 23 22 45 45 H 0.96697 * 116.99690 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0003 6 6 5.1949 1.7985 1.4209 7 6 6.0919 0.9640 2.0697 8 6 6.4693 1.2264 3.3669 9 6 5.9366 2.3435 4.0365 10 6 6.3122 2.6196 5.3715 11 1 7.2537 2.2540 5.7541 12 6 5.4640 3.3665 6.1968 13 7 4.2041 3.5143 5.8773 14 14 6.1309 4.1521 7.7547 15 1 7.5762 3.8381 7.8880 16 1 5.9493 5.6242 7.6836 17 1 5.3976 3.6193 8.9310 18 6 5.0310 3.1867 3.3662 19 6 4.6682 2.9051 2.0690 20 6 3.6142 -0.7153 -0.0050 21 6 4.8350 -1.5988 -0.0120 22 6 2.3271 -1.1330 0.0006 23 6 1.8599 -2.5657 0.0009 24 6 1.7018 -3.0509 -1.4415 25 6 1.2339 -4.4834 -1.4412 26 8 1.0467 -5.0576 -0.3947 27 8 1.0253 -5.1215 -2.6036 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8901 0.5134 31 1 4.5562 2.4331 -0.5139 32 1 5.6093 0.9981 -0.5134 33 1 6.4958 0.1044 1.5554 34 1 7.1685 0.5752 3.8703 35 1 3.6161 4.0317 6.4496 36 1 4.6193 4.0490 3.8693 37 1 3.9702 3.5485 1.5539 38 1 5.1321 -1.8163 1.0139 39 1 4.6062 -2.5305 -0.5293 40 1 5.6498 -1.0886 -0.5258 41 1 2.5935 -3.1870 0.5148 42 1 0.9011 -2.6352 0.5148 43 1 0.9681 -2.4296 -1.9554 44 1 2.6605 -2.9815 -1.9554 45 1 0.7259 -6.0396 -2.5528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608011335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:06 Heat of formation + Delta-G solvation = -41.528263 kcal Electronic energy + Delta-G solvation = -27059.611392 eV Core-core repulsion = 23234.550299 eV Total energy + Delta-G solvation = -3825.061094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.28038 -41.09184 -39.51293 -37.11853 -36.27888 -35.26815 -34.53846 -32.75199 -31.39324 -31.23691 -29.90348 -28.33453 -27.50056 -25.83755 -24.62096 -22.97939 -22.11125 -21.81800 -20.34698 -20.16840 -19.29047 -18.95451 -17.63436 -17.27226 -17.17843 -16.91566 -16.69348 -15.78221 -15.58816 -15.44620 -15.12925 -14.59649 -14.42996 -14.27143 -14.06795 -13.97006 -13.83871 -13.72128 -13.48865 -13.30565 -13.22510 -13.07277 -12.92423 -12.75106 -12.70919 -12.57316 -12.45870 -12.38988 -12.12699 -11.96466 -11.57653 -11.53985 -11.33577 -11.19432 -11.08892 -9.87922 -9.44151 -9.33925 -9.07340 -8.71053 -6.41795 0.73525 1.08963 1.11218 1.30861 1.34269 1.41039 1.50394 1.81039 1.90606 2.15971 2.34236 2.69971 3.64764 3.72342 3.84511 4.04578 4.11762 4.17571 4.19788 4.31515 4.37612 4.41794 4.52270 4.54786 4.56359 4.75178 4.78389 4.81008 4.81592 4.85675 4.99091 5.03824 5.08924 5.12015 5.24142 5.27327 5.34848 5.38700 5.44280 5.63584 5.71044 5.86533 5.94037 6.04205 6.13520 6.30419 6.33518 6.63922 6.86834 6.96436 6.98610 7.09023 8.25657 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.002529 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.116227 B =11069.809043 C =11114.032988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.060 3.940 3 N -0.342 5.342 4 N -0.360 5.360 5 C 0.195 3.805 6 C -0.234 4.234 7 C -0.063 4.063 8 C -0.246 4.246 9 C 0.085 3.915 10 C -0.495 4.495 11 H 0.080 0.920 12 C 0.032 3.968 13 N -0.824 5.824 14 Si 0.984 3.016 15 H -0.254 1.254 16 H -0.264 1.264 17 H -0.266 1.266 18 C -0.197 4.197 19 C -0.082 4.082 20 C 0.090 3.910 21 C -0.093 4.093 22 C -0.259 4.259 23 C -0.014 4.014 24 C -0.101 4.101 25 C 0.486 3.514 26 O -0.554 6.554 27 O -0.515 6.515 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.288 0.712 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -12.144 -15.682 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 N -0.164 5.164 4 N -0.141 5.141 5 C 0.076 3.924 6 C -0.236 4.236 7 C -0.082 4.082 8 C -0.265 4.265 9 C 0.083 3.917 10 C -0.524 4.524 11 H 0.098 0.902 12 C -0.183 4.183 13 N -0.450 5.450 14 Si 0.805 3.195 15 H -0.177 1.177 16 H -0.189 1.189 17 H -0.191 1.191 18 C -0.217 4.217 19 C -0.101 4.101 20 C -0.039 4.039 21 C -0.151 4.151 22 C -0.271 4.271 23 C -0.053 4.053 24 C -0.139 4.139 25 C 0.330 3.670 26 O -0.445 6.445 27 O -0.329 6.329 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -3.776 -10.415 -15.377 18.952 hybrid contribution -0.227 -0.588 1.268 1.416 sum -4.002 -11.003 -14.108 18.334 Atomic orbital electron populations 1.20241 0.85400 1.03280 1.03880 1.22682 0.97937 0.90463 0.99449 1.77254 0.87838 1.24372 1.26980 1.48941 1.04917 1.04669 1.55554 1.20411 0.83576 0.94399 0.94038 1.19445 1.06424 1.00456 0.97311 1.20724 0.96053 0.97542 0.93859 1.21195 1.08437 0.99833 0.97055 1.18025 0.90327 0.90034 0.93333 1.19936 1.05045 1.30910 0.96525 0.90237 1.26863 0.93977 0.94224 1.03267 1.69908 1.05406 1.31093 1.38601 0.85127 0.79824 0.78403 0.76181 1.17739 1.18898 1.19060 1.21233 1.04569 1.01523 0.94330 1.20711 0.97636 0.97219 0.94499 1.21423 0.97978 0.84718 0.99748 1.20627 0.92376 0.98365 1.03759 1.19655 0.91088 0.96007 1.20319 1.19478 1.01828 0.89267 0.94735 1.21393 1.05290 0.87550 0.99618 1.23820 0.72372 0.90234 0.80548 1.90735 1.49906 1.69216 1.34663 1.84519 1.79573 1.33740 1.35069 0.88664 0.89402 0.92077 0.89459 0.86145 0.85389 0.88046 0.90134 0.88671 0.89075 0.90610 0.87678 0.89511 0.91219 0.91160 0.86367 0.86193 0.71307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.26 71.23 0.73 -0.87 16 2 C 0.06 1.86 7.22 43.10 0.31 2.17 16 3 N -0.34 -12.75 12.58 -47.39 -0.60 -13.34 16 4 N -0.36 -12.17 3.60 -338.41 -1.22 -13.39 16 5 C 0.19 6.25 6.36 85.63 0.54 6.79 16 6 C -0.23 -9.60 5.49 -19.68 -0.11 -9.71 16 7 C -0.06 -2.57 9.67 22.22 0.21 -2.36 16 8 C -0.25 -11.79 9.80 22.73 0.22 -11.57 16 9 C 0.09 4.66 5.57 -21.29 -0.12 4.55 16 10 C -0.50 -26.98 9.05 23.46 0.21 -26.76 16 11 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 12 C 0.03 1.64 5.14 85.26 0.44 2.07 16 13 N -0.82 -44.71 10.95 21.83 0.24 -44.47 16 14 Si 0.98 38.71 29.59 68.60 2.03 40.74 16 15 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 16 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 17 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 18 C -0.20 -10.74 8.70 22.73 0.20 -10.54 16 19 C -0.08 -3.93 9.67 22.22 0.21 -3.71 16 20 C 0.09 2.56 6.93 41.41 0.29 2.85 16 21 C -0.09 -1.88 9.50 71.24 0.68 -1.21 16 22 C -0.26 -7.11 5.35 -20.14 -0.11 -7.22 16 23 C -0.01 -0.31 4.41 29.85 0.13 -0.18 16 24 C -0.10 -1.53 5.79 29.85 0.17 -1.35 16 25 C 0.49 8.21 8.33 71.24 0.59 8.80 16 26 O -0.55 -13.52 16.74 21.97 0.37 -13.15 16 27 O -0.52 -5.99 13.42 -51.48 -0.69 -6.68 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 1.73 7.26 -2.39 -0.02 1.71 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 2.74 8.08 -2.38 -0.02 2.72 16 32 H 0.12 2.92 6.98 -2.39 -0.02 2.90 16 33 H 0.13 4.10 7.83 -2.91 -0.02 4.08 16 34 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 36 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 37 H 0.09 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.52 7.79 -2.39 -0.02 1.51 16 40 H 0.09 1.46 7.07 -2.39 -0.02 1.44 16 41 H 0.07 1.55 7.75 -2.38 -0.02 1.53 16 42 H 0.07 1.58 7.21 -2.39 -0.02 1.56 16 43 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.43 1.60 9.10 -74.06 -0.67 0.92 16 Total: -1.00 -73.38 383.70 5.09 -68.29 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.35 Total: 30.26 kcal Atomic # 6 Polarization: -52.87 SS G_CDS: 4.61 Total: -48.26 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -1.57 Total: -71.20 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.32 Total: -19.84 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -73.38 5.09 -68.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608011335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.763 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds