Wall clock time and date at job start Tue Mar 31 2020 15:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34855 * 125.89248 * 2 1 4 4 C 1.40887 * 107.41963 * 180.02562 * 3 2 1 5 5 C 1.34848 * 107.41660 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.89348 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47301 * 95.01921 * 6 5 4 8 8 C 1.34775 * 119.99904 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00014 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00040 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47436 * 179.97438 * 10 8 7 12 12 C 1.38300 * 119.93634 * 269.73208 * 11 10 8 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47223 * 90.00094 * 20 18 16 22 22 H 1.48499 * 109.47046 * 209.99924 * 20 18 16 23 23 H 1.48492 * 109.47326 * 329.99691 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 N 1.36345 * 108.22195 * 0.26155 * 5 4 3 27 27 C 1.46500 * 125.63832 * 179.74031 * 26 5 4 28 28 H 1.08999 * 109.47495 * 89.97241 * 1 2 3 29 29 H 1.09002 * 109.47314 * 209.97635 * 1 2 3 30 30 H 1.09006 * 109.47138 * 329.97513 * 1 2 3 31 31 H 1.08000 * 126.28578 * 0.03874 * 3 2 1 32 32 H 1.08002 * 126.29452 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46470 * 335.02233 * 6 5 4 34 34 H 1.08996 * 109.47457 * 215.02708 * 6 5 4 35 35 H 0.96999 * 119.99614 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.47119 * 60.00120 * 10 8 7 37 37 H 1.09004 * 109.47334 * 300.00265 * 10 8 7 38 38 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 39 39 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 40 40 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 42 42 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 43 43 H 1.08995 * 109.47243 * 89.99955 * 27 26 5 44 44 H 1.09000 * 109.46610 * 210.00135 * 27 26 5 45 45 H 1.09003 * 109.46955 * 329.99392 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0006 5 6 3.6090 -0.7022 -0.0015 6 6 4.8133 -1.6081 -0.0019 7 7 5.1307 -1.9992 1.3738 8 6 6.1769 -2.8126 1.6188 9 8 6.8560 -3.2205 0.7005 10 6 6.5037 -3.2145 3.0340 11 6 7.7080 -4.1204 3.0336 12 6 7.5415 -5.4897 2.9339 13 6 8.6434 -6.3222 2.9275 14 6 9.9192 -5.7838 3.0333 15 8 11.0039 -6.5998 3.0339 16 6 12.2153 -6.0079 3.0241 17 1 12.2918 -4.9332 3.0988 18 6 13.3629 -6.7789 2.9181 19 7 13.2697 -8.0879 2.8267 20 14 15.0411 -5.9587 2.9053 21 1 15.5463 -5.8431 4.2969 22 1 15.9855 -6.7763 2.1022 23 1 14.9259 -4.6048 2.3064 24 6 10.0828 -4.4086 3.1390 25 6 8.9772 -3.5811 3.1392 26 7 2.3062 -1.1046 -0.0074 27 6 1.8421 -2.4941 -0.0157 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5142 31 1 1.9670 2.1207 0.0006 32 1 4.5160 1.2691 -0.0004 33 1 5.6637 -1.0816 -0.4353 34 1 4.5980 -2.4986 -0.5923 35 1 4.5878 -1.6726 2.1083 36 1 5.6536 -3.7410 3.4677 37 1 6.7189 -2.3237 3.6242 38 1 6.5488 -5.9082 2.8569 39 1 8.5128 -7.3911 2.8453 40 1 14.0726 -8.6273 2.7529 41 1 11.0736 -3.9870 3.2218 42 1 9.1038 -2.5117 3.2209 43 1 1.7239 -2.8438 1.0099 44 1 0.8844 -2.5541 -0.5327 45 1 2.5726 -3.1181 -0.5305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649700200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:02 Heat of formation + Delta-G solvation = 6.506648 kcal Electronic energy + Delta-G solvation = -26098.853170 eV Core-core repulsion = 22275.875026 eV Total energy + Delta-G solvation = -3822.978144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70824 -39.69622 -38.72005 -36.50367 -34.92491 -33.22966 -32.47722 -32.10262 -31.25821 -30.10003 -28.55374 -26.72679 -26.42045 -25.10287 -24.01448 -21.92123 -21.09383 -20.77956 -20.07601 -19.25614 -17.93115 -17.41815 -16.89027 -16.51485 -15.98578 -15.48241 -15.42378 -14.64313 -14.53524 -14.32720 -14.19798 -13.84578 -13.62174 -13.59439 -13.51670 -13.31836 -13.18408 -12.91192 -12.65983 -12.60191 -12.49358 -12.30750 -12.20294 -11.87988 -11.76300 -11.45129 -11.22410 -10.80592 -10.72081 -10.57066 -10.39045 -9.77323 -9.27502 -9.16177 -8.91944 -8.77760 -8.24257 -8.09791 -7.11049 -6.40148 -3.98597 1.72690 2.30039 2.32382 2.55100 2.63628 2.79484 3.15714 3.17375 3.22257 3.44357 4.01225 4.31588 4.38463 4.55912 4.60754 4.73310 4.80229 4.95342 5.03778 5.04455 5.13008 5.13471 5.28478 5.30262 5.32604 5.37443 5.44365 5.51009 5.56460 5.70692 5.78645 5.89546 5.95843 6.07316 6.26788 6.30831 6.47028 6.72250 6.75493 6.90676 6.96766 7.00957 7.10624 7.28934 7.42427 7.47093 7.50966 7.89336 8.05288 8.33440 9.05689 9.76511 10.78038 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030789 B = 0.001876 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.204165 B =14925.102398 C =15353.136196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.019 3.981 3 C -0.201 4.201 4 C -0.171 4.171 5 C -0.008 4.008 6 C 0.193 3.807 7 N -0.738 5.738 8 C 0.509 3.491 9 O -0.520 6.520 10 C -0.079 4.079 11 C -0.170 4.170 12 C -0.060 4.060 13 C -0.192 4.192 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.232 4.232 25 C -0.056 4.056 26 N -0.439 5.439 27 C 0.068 3.932 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.269 0.731 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.334 15.783 -2.882 29.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.226 4.226 4 C -0.197 4.197 5 C -0.119 4.119 6 C 0.069 3.931 7 N -0.393 5.393 8 C 0.296 3.704 9 O -0.394 6.394 10 C -0.119 4.119 11 C -0.171 4.171 12 C -0.079 4.079 13 C -0.211 4.211 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.251 4.251 25 C -0.075 4.075 26 N -0.116 5.116 27 C -0.074 4.074 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.733 14.634 -3.604 28.963 hybrid contribution 0.552 0.652 0.248 0.890 sum -24.180 15.286 -3.356 28.803 Atomic orbital electron populations 1.20304 0.88220 1.03126 1.02485 1.20398 0.93400 0.85885 1.09642 1.20687 0.92670 0.97537 1.11660 1.20769 0.97528 0.92741 1.08661 1.20231 0.84143 0.94450 1.13083 1.19550 0.92740 0.96346 0.84477 1.46238 1.32871 1.51673 1.08486 1.21096 0.79335 0.77662 0.92357 1.90756 1.49014 1.53261 1.46321 1.20399 0.98360 1.00261 0.92849 1.18629 0.92716 0.93089 1.12654 1.20387 0.96978 0.92463 0.98023 1.20149 0.90112 0.99593 1.11245 1.19380 0.88533 0.89674 0.92142 1.83972 1.12184 1.33069 1.78993 1.21329 0.80151 0.92975 1.52219 0.89083 1.25284 0.99206 0.95506 0.96570 1.70042 1.29771 1.04084 1.45990 0.85714 0.80288 0.78883 0.78562 1.19917 1.20282 1.19196 1.21110 0.99171 0.93439 1.11417 1.20518 0.91775 0.97984 0.97195 1.43868 1.05349 1.05903 1.56434 1.22028 1.01650 0.80265 1.03418 0.91186 0.91926 0.90147 0.84660 0.84492 0.89453 0.91303 0.76734 0.89111 0.88959 0.87473 0.86578 0.92089 0.85581 0.87792 0.90794 0.89862 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 9.87 36.00 0.36 -0.05 16 2 C 0.02 0.15 6.89 -81.79 -0.56 -0.41 16 3 C -0.20 -1.77 10.76 -39.78 -0.43 -2.20 16 4 C -0.17 -1.63 10.76 -39.78 -0.43 -2.06 16 5 C -0.01 -0.08 6.26 -81.79 -0.51 -0.59 16 6 C 0.19 1.96 5.83 -5.19 -0.03 1.93 16 7 N -0.74 -7.47 5.55 -61.47 -0.34 -7.81 16 8 C 0.51 7.02 7.82 -10.99 -0.09 6.94 16 9 O -0.52 -9.81 16.03 5.56 0.09 -9.72 16 10 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 11 C -0.17 -3.00 4.38 -104.58 -0.46 -3.45 16 12 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 13 C -0.19 -4.25 9.99 -39.39 -0.39 -4.64 16 14 C 0.16 3.95 6.65 -39.10 -0.26 3.69 16 15 O -0.18 -5.27 9.76 0.07 0.00 -5.27 16 16 C -0.39 -11.23 9.49 30.89 0.29 -10.94 16 17 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.85 13.67 55.48 0.76 -25.09 16 20 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 25 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 26 N -0.44 -3.57 3.15 -115.29 -0.36 -3.94 16 27 C 0.07 0.38 10.54 59.85 0.63 1.01 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.25 7.72 -51.93 -0.40 -0.15 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 34 H 0.07 0.73 7.21 -51.93 -0.37 0.36 16 35 H 0.40 3.14 8.46 -40.82 -0.35 2.80 16 36 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 42 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.32 7.65 -51.93 -0.40 -0.08 16 45 H 0.09 0.49 7.11 -51.93 -0.37 0.12 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -35.61 384.48 -8.60 -44.21 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.24 Total: 5.42 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -3.27 Total: -19.61 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.05 Total: -36.84 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.09 Total: -14.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.61 -8.60 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649700200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.717 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds