Wall clock time and date at job start Tue Mar 31 2020 15:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34855 * 125.89248 * 2 1 4 4 C 1.40887 * 107.41963 * 180.02562 * 3 2 1 5 5 C 1.34848 * 107.41660 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.89348 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47301 * 95.01921 * 6 5 4 8 8 C 1.34775 * 119.99904 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00014 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00040 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47436 * 179.97438 * 10 8 7 12 12 C 1.38300 * 119.93634 * 269.73208 * 11 10 8 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47223 * 90.00094 * 20 18 16 22 22 H 1.48499 * 109.47046 * 209.99924 * 20 18 16 23 23 H 1.48492 * 109.47326 * 329.99691 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 N 1.36345 * 108.22195 * 0.26155 * 5 4 3 27 27 C 1.46500 * 125.63832 * 179.74031 * 26 5 4 28 28 H 1.08999 * 109.47495 * 89.97241 * 1 2 3 29 29 H 1.09002 * 109.47314 * 209.97635 * 1 2 3 30 30 H 1.09006 * 109.47138 * 329.97513 * 1 2 3 31 31 H 1.08000 * 126.28578 * 0.03874 * 3 2 1 32 32 H 1.08002 * 126.29452 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46470 * 335.02233 * 6 5 4 34 34 H 1.08996 * 109.47457 * 215.02708 * 6 5 4 35 35 H 0.96999 * 119.99614 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.47119 * 60.00120 * 10 8 7 37 37 H 1.09004 * 109.47334 * 300.00265 * 10 8 7 38 38 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 39 39 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 40 40 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 42 42 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 43 43 H 1.08995 * 109.47243 * 89.99955 * 27 26 5 44 44 H 1.09000 * 109.46610 * 210.00135 * 27 26 5 45 45 H 1.09003 * 109.46955 * 329.99392 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0006 5 6 3.6090 -0.7022 -0.0015 6 6 4.8133 -1.6081 -0.0019 7 7 5.1307 -1.9992 1.3738 8 6 6.1769 -2.8126 1.6188 9 8 6.8560 -3.2205 0.7005 10 6 6.5037 -3.2145 3.0340 11 6 7.7080 -4.1204 3.0336 12 6 7.5415 -5.4897 2.9339 13 6 8.6434 -6.3222 2.9275 14 6 9.9192 -5.7838 3.0333 15 8 11.0039 -6.5998 3.0339 16 6 12.2153 -6.0079 3.0241 17 1 12.2918 -4.9332 3.0988 18 6 13.3629 -6.7789 2.9181 19 7 13.2697 -8.0879 2.8267 20 14 15.0411 -5.9587 2.9053 21 1 15.5463 -5.8431 4.2969 22 1 15.9855 -6.7763 2.1022 23 1 14.9259 -4.6048 2.3064 24 6 10.0828 -4.4086 3.1390 25 6 8.9772 -3.5811 3.1392 26 7 2.3062 -1.1046 -0.0074 27 6 1.8421 -2.4941 -0.0157 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5142 31 1 1.9670 2.1207 0.0006 32 1 4.5160 1.2691 -0.0004 33 1 5.6637 -1.0816 -0.4353 34 1 4.5980 -2.4986 -0.5923 35 1 4.5878 -1.6726 2.1083 36 1 5.6536 -3.7410 3.4677 37 1 6.7189 -2.3237 3.6242 38 1 6.5488 -5.9082 2.8569 39 1 8.5128 -7.3911 2.8453 40 1 14.0726 -8.6273 2.7529 41 1 11.0736 -3.9870 3.2218 42 1 9.1038 -2.5117 3.2209 43 1 1.7239 -2.8438 1.0099 44 1 0.8844 -2.5541 -0.5327 45 1 2.5726 -3.1181 -0.5305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649700200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:01 Heat of formation + Delta-G solvation = -16.506320 kcal Electronic energy + Delta-G solvation = -26099.851087 eV Core-core repulsion = 22275.875026 eV Total energy + Delta-G solvation = -3823.976061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.32932 -41.03698 -40.31053 -38.22362 -35.91757 -34.39714 -33.77632 -33.11952 -32.38214 -31.76944 -29.47803 -27.89466 -27.22393 -26.86058 -24.79723 -23.62963 -22.54540 -21.46801 -21.23517 -19.89480 -19.82269 -18.86400 -18.22922 -17.47343 -16.76546 -16.61756 -16.40265 -16.17486 -16.03027 -15.68235 -15.50835 -15.15375 -14.94117 -14.69133 -14.39933 -14.37107 -14.14428 -13.94621 -13.87046 -13.59096 -13.39771 -13.13343 -12.96722 -12.91083 -12.79908 -12.72421 -12.47688 -12.43311 -12.28123 -12.23165 -12.12560 -11.17456 -10.99186 -10.76056 -10.12638 -9.75649 -9.53266 -8.94403 -8.83459 -8.47338 -6.15428 0.62174 0.66729 1.09465 1.33721 1.43427 1.51753 1.72297 1.94371 2.01039 2.17624 2.48720 2.87008 3.18787 3.53057 3.65564 3.86974 3.95606 4.03086 4.06348 4.16105 4.19782 4.25470 4.36790 4.45766 4.50360 4.58799 4.61488 4.71456 4.71799 4.74396 4.81374 4.81616 4.89929 5.09592 5.13227 5.15048 5.31139 5.33013 5.39559 5.45095 5.57142 5.72301 5.78694 6.03072 6.08139 6.23651 6.27221 6.44833 6.60571 6.97240 7.32944 7.78648 8.76086 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030789 B = 0.001876 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.204165 B =14925.102398 C =15353.136196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.021 3.979 3 C -0.223 4.223 4 C -0.185 4.185 5 C -0.020 4.020 6 C 0.199 3.801 7 N -0.715 5.715 8 C 0.513 3.487 9 O -0.579 6.579 10 C -0.076 4.076 11 C -0.145 4.145 12 C -0.057 4.057 13 C -0.206 4.206 14 C 0.111 3.889 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.020 2.980 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.256 1.256 24 C -0.245 4.245 25 C -0.061 4.061 26 N -0.441 5.441 27 C 0.062 3.938 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.414 0.586 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.273 0.727 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.494 18.414 -2.245 34.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.247 4.247 4 C -0.211 4.211 5 C -0.131 4.131 6 C 0.075 3.925 7 N -0.369 5.369 8 C 0.301 3.699 9 O -0.458 6.458 10 C -0.116 4.116 11 C -0.146 4.146 12 C -0.075 4.075 13 C -0.226 4.226 14 C 0.061 3.939 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.117 0.883 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.839 3.161 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.264 4.264 25 C -0.079 4.079 26 N -0.117 5.117 27 C -0.079 4.079 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.251 0.749 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.155 0.845 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -27.992 17.320 -2.936 33.047 hybrid contribution 1.103 0.019 0.027 1.104 sum -26.889 17.339 -2.909 32.126 Atomic orbital electron populations 1.20402 0.85949 1.04278 1.03355 1.20915 0.94842 0.85534 1.07970 1.20938 0.92573 0.98556 1.12619 1.20953 0.98144 0.93098 1.08939 1.20040 0.84504 0.94162 1.14398 1.19415 0.92823 0.96134 0.84167 1.46016 1.31688 1.50042 1.09159 1.21190 0.79279 0.77393 0.92060 1.90765 1.51217 1.55777 1.47993 1.20519 0.97224 1.01020 0.92802 1.19252 0.94172 0.93579 1.07600 1.20881 0.97573 0.92846 0.96205 1.20450 0.90278 1.00273 1.11571 1.19946 0.88704 0.90841 0.94385 1.83932 1.13180 1.34800 1.82142 1.21817 0.80800 0.93668 1.52759 0.88309 1.26611 1.03546 0.96168 0.95825 1.70188 1.31131 1.05978 1.48641 0.84577 0.74230 0.78057 0.79262 1.18477 1.19495 1.17940 1.21231 1.00223 0.92986 1.11950 1.20946 0.91447 0.99341 0.96187 1.44059 1.04875 1.06955 1.55789 1.22231 1.02366 0.78826 1.04453 0.90362 0.90654 0.89152 0.83683 0.84493 0.90693 0.91801 0.74914 0.85068 0.85491 0.83417 0.86949 0.91844 0.86552 0.84465 0.89551 0.87995 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 9.87 71.23 0.70 0.17 16 2 C 0.02 0.28 6.89 41.08 0.28 0.56 16 3 C -0.22 -3.52 10.76 22.14 0.24 -3.28 16 4 C -0.19 -3.29 10.76 22.14 0.24 -3.05 16 5 C -0.02 -0.34 6.26 41.08 0.26 -0.08 16 6 C 0.20 3.71 5.83 85.64 0.50 4.21 16 7 N -0.72 -12.13 5.55 -466.79 -2.59 -14.72 16 8 C 0.51 12.38 7.82 87.66 0.69 13.07 16 9 O -0.58 -20.85 16.03 -3.03 -0.05 -20.90 16 10 C -0.08 -1.52 5.83 29.10 0.17 -1.35 16 11 C -0.14 -4.65 4.38 -19.83 -0.09 -4.74 16 12 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 13 C -0.21 -9.35 9.99 22.39 0.22 -9.13 16 14 C 0.11 5.90 6.65 22.58 0.15 6.05 16 15 O -0.23 -14.76 9.76 -22.66 -0.22 -14.99 16 16 C -0.41 -25.23 9.49 67.92 0.64 -24.59 16 17 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 18 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 19 N -0.92 -58.24 13.67 21.61 0.30 -57.95 16 20 Si 1.02 44.48 29.55 68.60 2.03 46.50 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 C -0.24 -11.42 9.17 22.39 0.21 -11.22 16 25 C -0.06 -2.25 9.69 22.25 0.22 -2.04 16 26 N -0.44 -6.06 3.15 -518.68 -1.63 -7.69 16 27 C 0.06 0.50 10.54 127.77 1.35 1.85 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.31 7.72 -2.39 -0.02 0.29 16 30 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.06 1.28 7.21 -2.39 -0.02 1.26 16 35 H 0.41 4.74 8.46 -92.71 -0.78 3.96 16 36 H 0.13 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.13 1.80 8.08 -2.38 -0.02 1.79 16 38 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 42 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.10 0.44 7.65 -2.39 -0.02 0.43 16 45 H 0.08 0.75 7.11 -2.39 -0.02 0.73 16 Total: -1.00 -84.76 384.48 4.51 -80.25 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.23 Total: 25.83 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 6.45 Total: -36.33 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -3.93 Total: -80.36 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.27 Total: -35.89 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -84.76 4.51 -80.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649700200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.743 kcal (2) G-P(sol) polarization free energy of solvation -84.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds